Clone FI04125 Report

Search the DGRC for FI04125

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:41
Well:25
Vector:pBS SK-
Associated Gene/Transcriptnrv1-RA
Protein status:FI04125.pep: gold
Sequenced Size:1914

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
nrv1 2008-12-18 5.12 accounting

Clone Sequence Records

FI04125.complete Sequence

1914 bp assembled on 2008-09-12

GenBank Submission: BT044185.1

> FI04125.complete
CAACACGCAGCACGCATCGCCATTCGCAGTCGCAGGAAGCAGGGAAACCA
AGAGTTGGCAACAACTTCTCGTGGCTCCCAGCCCGTTTGTTTGTGCTTCT
GATTCGGCTTATTTCGCCCAAAATCGGTTCTAACTTATTTTCCTAACTCT
AAGACCAGTCGAGCAGTCGAGGCGCAAATAATTGCATAATTACACGTTTT
TCAAAAATATTCAAGAGTACTGCGAGTGCGAAAATAAATGAGAATTCAGT
TTCGAGTCTGCTGAATCATCGCATATACACAGCACAACGTATACATAAAT
CAGTTTTCGTAGCCTTCGCGCCGTCCACGTCATCAACGAAAAGTATAAAC
CAAATTTTCGAATCGAATCGAATACTGAAAAGCTAACCGTAAACAAGTGC
GAAAGAACAGCGCCGCAATGTCAAAGAATAACGGAAAGGGCGCCAAAGGC
GAATTCGAATTCCCGCAGCCAGCGAAGAAGCAAACCTTCTCGGAAATGAT
CTACAATCCCCAGGAAGGCACCTTCTTCGGACGCACCGGAAAAAGTTGGA
GTCAGCTACTGCTGTTCTACACAATCTTCTACATCGTTCTGGCCGCCCTC
TTCACCATTTGCATGCAGGGTCTTCTGTCCACCATCAGCGATACGGAACC
CAAGTGGAAGCTGCAAGACTCGCTGATAGGCACCAATCCCGGCCTGGGAT
TCCGTCCATTGAGTGAGCAGACCGAGCGAGGATCGGTGATCGCCTTCGAT
GGCAAGAAACCGGCCGAGAGCGATTACTGGATCGAGCTGATTGATGACTT
CCTCCGGGACTACAACCACACCGAGGGACGGGATATGAAGCACTGCGGCT
TCGGTCAGGTCCTCGAACCCACGGATGTGTGTGTGGTGAACACGGATCTG
TTTGGCGGCTGTTCCAAGGCCAATAACTATGGCTACAAGACGAACCAGCC
CTGCATATTCTTGAAGCTGAATAAGATCTTTGGCTGGATTCCGGAAGTGT
ACGATAAGGAGGAGAAGGATATGCCTGATGATCTGAAAAAGGTGATCAAT
GAGACGAAAACGGAGGAGCGGCAGCAAGTCTGGGTGAGCTGCAACGGTCA
CTTGGGCAAGGACAAGGAGAACTTCCAGAACATCCGCTACTTCCCCAGCC
AAGGGTTCCCAAGCTACTACTACCCGTTCCTGAACCAGCCGGGTTACCTG
AGTCCGCTGGTGGCCGTGCAGTTCAACTCCCCGCCCAAGGGTCAAATGCT
GGACGTGGAGTGCCGTGCCTGGGCCAAGAATATTCAGTACAGTGGCAGTG
TCCGCGATCGCAAGGGCTCCGTGACCTTCCAGATCCTCCTGGACTAAGTG
CGGGGAATGGGAATCATGTCGCCAACTTGTGATCGCAGCAGCAAATACTA
GCCGTATTCTGGGCGAGGATATGGCAAACCGCGTCGGAGACCAACTACCA
CCTACCTTACTGAAAGAGATATACACATATGCAGATATAGATATATATAT
ATATATATGGAATGAGCTAGCGACCTTAGGTTTTCAAGTGTATTGTATAT
ATTTATACGAAGGAATGATCCGACCGATCGTCAATTGAACTCTGAACATC
TGGCCTAATAGAGAAATAGAAAGTCGAAAATCTTGAAATTAAAGTTCAAA
TCGTACACACGCAATTGTTGTTATAGCTTTTAGCTTGTCTATTGCTATCA
GTTATTATTATTAATATTTATCATATTATTTCATTATGAATTCTTGTAAT
TACGATCATTATTTTCTGTCAGTTGTATTTAGTTTTAATTTATAAATGTT
GAAACATGCCCGAAAAATTCTTTGTTTCCCGCACATCGCCTAGGCTTGTT
CAATTTGTACAAAGAAGCAACTAAATAAATTATAATTGTTAAATGTAAAA
AAAAAAAAAAAAAA

FI04125.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
nrv1-RA 2236 nrv1-RA 65..1961 1..1897 9485 100 Plus
nrv1.b 2185 nrv1.b 26..1916 1..1897 9370 99.6 Plus
nrv1.a 2136 nrv1.a 368..1867 398..1897 7500 100 Plus
nrv1.a 2136 nrv1.a 26..367 1..342 1710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6777863..6778692 1896..1067 4120 99.8 Minus
chr2L 23010047 chr2L 6785319..6785870 552..1 2760 100 Minus
chr2L 23010047 chr2L 6778751..6779011 1068..808 1305 100 Minus
chr2L 23010047 chr2L 6779071..6779328 808..551 1290 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6778823..6779653 1897..1067 4155 100 Minus
2L 23513712 2L 6786280..6786831 552..1 2760 100 Minus
2L 23513712 2L 6779712..6779972 1068..808 1305 100 Minus
2L 23513712 2L 6780032..6780289 808..551 1290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6778823..6779653 1897..1067 4155 100 Minus
2L 23513712 2L 6786280..6786831 552..1 2760 100 Minus
2L 23513712 2L 6779712..6779972 1068..808 1305 100 Minus
2L 23513712 2L 6780032..6780289 808..551 1290 100 Minus
Blast to na_te.dros performed 2019-03-15 14:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1117..1254 1793..1659 158 62.9 Minus
looper1 1881 looper1 LOOPER1_DM 1881bp 1128..1181 151..203 114 72.7 Plus

FI04125.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:52:34 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6779071..6779328 551..808 100 <- Minus
chr2L 6777863..6777995 1764..1896 100 == Minus
chr2L 6778070..6778690 1069..1689 93 <- Minus
chr2L 6778751..6779010 809..1068 100 <- Minus
chr2L 6785321..6785870 1..550 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:47:27 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 1..930 418..1347 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:00:46 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 1..930 418..1347 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:46:58 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 1..930 418..1347 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:47 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 1..930 418..1347 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:52 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:00:46 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:46:58 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 31..1926 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-12 15:54:12 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:47 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
nrv1-RA 31..1926 1..1896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:34 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6778824..6779651 1069..1896 100 <- Minus
2L 6779712..6779971 809..1068 100 <- Minus
2L 6780032..6780289 551..808 100 <- Minus
2L 6786282..6786831 1..550 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:34 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6778824..6779651 1069..1896 100 <- Minus
2L 6779712..6779971 809..1068 100 <- Minus
2L 6780032..6780289 551..808 100 <- Minus
2L 6786282..6786831 1..550 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:34 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6778824..6779651 1069..1896 100 <- Minus
2L 6779712..6779971 809..1068 100 <- Minus
2L 6780032..6780289 551..808 100 <- Minus
2L 6786282..6786831 1..550 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:46:58 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6778824..6779651 1069..1896 100 <- Minus
arm_2L 6779712..6779971 809..1068 100 <- Minus
arm_2L 6780032..6780289 551..808 100 <- Minus
arm_2L 6786282..6786831 1..550 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:27:54 Download gff for FI04125.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6780032..6780289 551..808 100 <- Minus
2L 6778824..6779651 1069..1896 100 <- Minus
2L 6779712..6779971 809..1068 100 <- Minus
2L 6786282..6786831 1..550 100   Minus

FI04125.pep Sequence

Translation from 417 to 1346

> FI04125.pep
MSKNNGKGAKGEFEFPQPAKKQTFSEMIYNPQEGTFFGRTGKSWSQLLLF
YTIFYIVLAALFTICMQGLLSTISDTEPKWKLQDSLIGTNPGLGFRPLSE
QTERGSVIAFDGKKPAESDYWIELIDDFLRDYNHTEGRDMKHCGFGQVLE
PTDVCVVNTDLFGGCSKANNYGYKTNQPCIFLKLNKIFGWIPEVYDKEEK
DMPDDLKKVINETKTEERQQVWVSCNGHLGKDKENFQNIRYFPSQGFPSY
YYPFLNQPGYLSPLVAVQFNSPPKGQMLDVECRAWAKNIQYSGSVRDRKG
SVTFQILLD*

FI04125.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14480-PA 309 GF14480-PA 1..309 1..309 1430 84.5 Plus
Dana\GF14479-PA 323 GF14479-PA 20..323 16..309 647 41.8 Plus
Dana\GF14332-PA 311 GF14332-PA 7..311 11..309 612 38.6 Plus
Dana\GF18472-PA 378 GF18472-PA 27..260 19..289 184 24.5 Plus
Dana\GF18471-PA 386 GF18471-PA 28..273 20..306 172 23.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23582-PA 309 GG23582-PA 1..309 1..309 1563 93.2 Plus
Dere\GG23580-PA 323 GG23580-PA 20..323 16..309 639 40.8 Plus
Dere\GG21302-PA 311 GG21302-PA 7..311 11..309 611 39 Plus
Dere\GG21303-PA 204 GG21303-PA 10..204 115..309 391 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10787-PA 309 GH10787-PA 1..309 1..309 1189 68.3 Plus
Dgri\GH10786-PA 323 GH10786-PA 20..323 16..309 667 41.8 Plus
Dgri\GH13318-PA 311 GH13318-PA 7..311 11..309 585 38.3 Plus
Dgri\GH22397-PA 277 GH22397-PA 27..276 19..308 211 25.3 Plus
Dgri\GH22396-PA 310 GH22396-PA 139..282 164..289 155 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
nrv1-PB 309 CG9258-PB 1..309 1..309 1679 100 Plus
nrv1-PA 309 CG9258-PA 1..309 1..309 1679 100 Plus
nrv2-PG 323 CG9261-PG 20..323 16..309 654 42.2 Plus
nrv2-PF 323 CG9261-PF 20..323 16..309 654 42.2 Plus
nrv2-PC 323 CG9261-PC 20..323 16..309 654 42.2 Plus
nrv2-PE 322 CG9261-PE 22..322 16..309 639 42.5 Plus
nrv2-PA 322 CG9261-PA 22..322 16..309 639 42.5 Plus
nrv2-PD 322 CG9261-PD 22..322 16..309 639 42.5 Plus
nrv3-PD 311 CG8663-PD 7..311 11..309 615 39 Plus
nrv3-PC 311 CG8663-PC 7..311 11..309 615 39 Plus
nrv3-PA 311 CG8663-PA 7..311 11..309 615 39 Plus
nrv3-PE 313 CG8663-PE 7..313 11..309 601 38.7 Plus
CG11703-PA 353 CG11703-PA 28..258 20..289 230 24.9 Plus
CG33310-PB 876 CG33310-PB 575..857 12..308 174 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17299-PA 309 GI17299-PA 1..309 1..309 1299 76.4 Plus
Dmoj\GI17298-PA 323 GI17298-PA 20..323 16..309 648 41.8 Plus
Dmoj\GI12264-PA 310 GI12264-PA 7..310 11..309 625 40.7 Plus
Dmoj\GI16930-PA 276 GI16930-PA 32..263 24..293 154 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25961-PA 309 GL25961-PA 1..309 1..309 1397 80.9 Plus
Dper\GL25223-PA 321 GL25223-PA 10..321 3..309 931 55.6 Plus
Dper\GL25960-PA 323 GL25960-PA 20..323 16..309 638 41.2 Plus
Dper\GL26665-PA 311 GL26665-PA 7..311 11..309 600 39 Plus
Dper\GL11976-PA 625 GL11976-PA 137..276 161..308 148 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21650-PA 309 GA21650-PA 1..309 1..309 1393 80.6 Plus
Dpse\GA22950-PA 321 GA22950-PA 10..321 3..309 925 55.3 Plus
Dpse\GA21652-PA 323 GA21652-PA 20..323 16..309 637 41.2 Plus
Dpse\GA21243-PA 311 GA21243-PA 7..311 11..309 600 39 Plus
Dpse\GA11151-PA 623 GA11151-PA 137..276 161..308 149 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13836-PA 309 GM13836-PA 1..309 1..309 1627 98.1 Plus
Dsec\GM13825-PA 323 GM13825-PA 20..323 16..309 655 42.2 Plus
Dsec\GM23414-PA 311 GM23414-PA 7..311 11..309 611 39 Plus
Dsec\GM26920-PA 347 GM26920-PA 28..258 20..289 223 24.5 Plus
Dsec\GM26919-PA 311 GM26919-PA 139..281 164..289 151 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22541-PA 309 GD22541-PA 1..309 1..309 1645 98.7 Plus
Dsim\GD22540-PA 340 GD22540-PA 20..340 16..309 637 40.2 Plus
Dsim\GD20125-PA 347 GD20125-PA 28..258 20..289 223 24.5 Plus
Dsim\GD20124-PA 311 GD20124-PA 139..281 164..289 150 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15669-PA 309 GJ15669-PA 1..309 1..309 1262 73.5 Plus
Dvir\GJ15658-PA 323 GJ15658-PA 20..323 16..309 657 41.5 Plus
Dvir\GJ17853-PA 311 GJ17853-PA 7..311 11..309 609 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24211-PA 309 GK24211-PA 1..309 1..309 1340 76.4 Plus
Dwil\GK24210-PA 323 GK24210-PA 20..323 16..309 663 42.2 Plus
Dwil\GK18742-PA 311 GK18742-PA 7..311 11..309 603 38.6 Plus
Dwil\GK13483-PA 345 GK13483-PA 22..257 14..290 169 24.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18403-PA 309 GE18403-PA 1..309 1..309 1577 93.9 Plus
Dyak\GE18402-PA 323 GE18402-PA 20..323 16..309 650 41.8 Plus
Dyak\GE12918-PA 311 GE12918-PA 7..311 11..309 615 39 Plus
Dyak\GE25144-PA 348 GE25144-PA 28..274 20..309 209 23.3 Plus
Dyak\GE25143-PA 311 GE25143-PA 50..281 46..289 148 25.6 Plus

FI04125.hyp Sequence

Translation from 417 to 1346

> FI04125.hyp
MSKNNGKGAKGEFEFPQPAKKQTFSEMIYNPQEGTFFGRTGKSWSQLLLF
YTIFYIVLAALFTICMQGLLSTISDTEPKWKLQDSLIGTNPGLGFRPLSE
QTERGSVIAFDGKKPAESDYWIELIDDFLRDYNHTEGRDMKHCGFGQVLE
PTDVCVVNTDLFGGCSKANNYGYKTNQPCIFLKLNKIFGWIPEVYDKEEK
DMPDDLKKVINETKTEERQQVWVSCNGHLGKDKENFQNIRYFPSQGFPSY
YYPFLNQPGYLSPLVAVQFNSPPKGQMLDVECRAWAKNIQYSGSVRDRKG
SVTFQILLD*

FI04125.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
nrv1-PB 309 CG9258-PB 1..309 1..309 1679 100 Plus
nrv1-PA 309 CG9258-PA 1..309 1..309 1679 100 Plus
nrv2-PG 323 CG9261-PG 20..323 16..309 654 42.2 Plus
nrv2-PF 323 CG9261-PF 20..323 16..309 654 42.2 Plus
nrv2-PC 323 CG9261-PC 20..323 16..309 654 42.2 Plus