Clone FI04434 Report

Search the DGRC for FI04434

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:44
Well:34
Vector:pFlc-1
Associated Gene/TranscriptAph-4-RA
Protein status:FI04434.pep: gold
Sequenced Size:2166

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Aph-4 2008-12-18 5.12 accounting

Clone Sequence Records

FI04434.complete Sequence

2166 bp assembled on 2008-11-07

GenBank Submission: BT057987.1

> FI04434.complete
GAGTCGCAAGTTGAGAACCACTCGGCATAGAATTAGAATTCCAGAGCCAG
AGGAGAGCCGAGAAGAATCGTCCCGATCCGTTCCACTCCGCACTTCGAAT
CAATTTCGATGGCCCGCTGAAGAATCTGCGCCTCAAGCTAAGCTGTGATA
CGAATCCGCATTTGAATAGAAGTCGCAGCGCCGCCACAGATAGTCGCCAC
CAATTGCTCGCGTTTTGTGCACATTAGAGAAATGCATTGCCTGGTGATAC
TCGGATTTCTGCTGGGTAGCCTGGTGGCATTCAGCTGGGCAGGAGTCACA
ACCCAGCCACCGCCACTCATACGCACCCTAAGTGCCGGCGGAGACATAGG
ACCCCAGTTCGACGTGGGGAAGACCAAGGAACCCGAAGACGCGGAATTCT
GGCACAACGTGGGCCTGAGGCAGCTGGAGAAGACCATTAAGCAGGCGCAG
CGCGTGAAGGAGGACTCCTACCAGAAAAAGGCGCGGAATATCATCATCTT
CATCGGAGACGGCATGGGAATATCCACGATCAGTGCTGGTCGCATCTACA
AGGGGCAGTACCTGAAGCATGGTTACGGCGAGGAGGAAACCCTCGTCTTC
GACGATTTCCCAAACACTGGAATGGCCAAAACCTACAACGTGGACAAACA
AGTGCCGGATTCGGCGGGCACTGCCACTGCGATCTTCTCGGGTTCGAAAA
CCCATTACGGAGCCATTGGAATGGACGCCACCCGCTCCAAGAAGAATGGG
CAGCAAGGCAGGGTCCAGAGCGTCATGGAGTGGGCCCAGAAGGAGGGCAA
GCGCACCGGCGTGGTCACCACAACCAGGATCACGCACGCCACGCCCGCCG
CCACCTACGCCCACATCTACGACCGGGACTGGGAGTGCGACACGGAAGTG
CCCGCGGAATCGGTGGGCTTTCATGTCGATATTGCCCGTCAGTTGGTGGA
GAATGCTCCGGGAAATCGGTTCAATGTGATCCTGGGCGGAGGAATGTCGC
CCATGGGCATTCTGAATGCCTCCGAGGTGAAGACTACTATTTTCGAAGGA
CCCACGGAAACAATTTGCACCCGCGGTGATAACAGAAACCTTCCTGCCGA
GTGGCTGGCCCATCACGCCAACGACACAGTTCCTCCAGCATTGGTACATA
ACCGTAAGGATCTGCTTAATGTGAATGTCAAGAAGGTGGACCATTTGATG
GGCCTGTTCCGAAACAATCACATTACGTACTCCATAGCCAGGGAGGCGGG
AGAGCCTTCCCTGCAAGAGATGACGGAGACGGCCTTAGGAATCTTGGAAA
GGGGCGATGAGTCCAACGGCTTTGTGCTCCTGGTGGAAGGAGGTCGCATT
GACCAGGGTCACCACATGAACTACGCCCGTGCTGCTCTGCACGAGCTCTA
CGAATTCGATTTGGCAATCCAAGCGGCCGTGAACAATACGGATCCCGACG
AAACGTTGATCCTGGTGACGGCAGACCATTCCCACGCGGTCACCTTTAAT
GGTTACGCGCTCCGTGGAGCTGATATCCTGGGGACAGCTAATTCACACGA
GAAAAACGATCCCATGTTCTACGAGACCATCTCGTATGCCAATGGTCCTG
GCTATTGGGATCACTTGGCGAATGACTCCAGACCTCAGAACAGCTCCAAC
ATGTGGATGCCCCTGAAGCATTTTACCGCTGAGGAGCGGGCTGCTCCCAC
TTATCGCCACTTGGCGACGGTTCCCAGAAAGGACGAAACGCACGGCGGCG
AGGATGTGGCTGTCTTTGCATATGGACCTGGTTCCAGTTTGATTCGCGGG
GTCTTCGAGCAGAACTACTTGGCCTATGTGATGAGCTACGCGGGCTGTTT
GGGTCCTGCCAAGGACTTCGATGACTCCTGTGAGGATCACAAGGATGGGC
AAAAGGATAGGCCGCTGGACAAACCCAATCCAAAGAGAAATGGCGCCACT
GTTGTGGGAGCCTCCTTGATCCCCATTTTGACTGCTGCCACTGCGGCTAT
TTTGCGCGGTCGCGGGCTGTAATTAATGTTGTTTTAAATATATTAATTGT
TATTAAAGTTTATAGACGTACGGATGGCTTCGTTGAATGAGAGAGTGAGC
GAGATGGAGGAGTGATCGTTGCAACTTAACAAATAGATACACTGAAAAAT
AAAAAAAAAAAAAAAA

FI04434.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Aph-4-RA 2285 Aph-4-RA 131..2280 2..2151 10750 100 Plus
Aph-4-RB 2027 Aph-4-RB 258..2022 387..2151 8825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26873357..26874322 631..1596 4695 99.1 Plus
chr3R 27901430 chr3R 26874380..26874934 1594..2150 2585 98 Plus
chr3R 27901430 chr3R 26871330..26871718 2..388 1850 99 Plus
chr3R 27901430 chr3R 26873046..26873289 387..630 1220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31050961..31051926 631..1596 4830 100 Plus
3R 32079331 3R 31051984..31052541 1594..2151 2790 100 Plus
3R 32079331 3R 31048933..31049319 2..388 1935 100 Plus
3R 32079331 3R 31050650..31050893 387..630 1220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30791792..30792757 631..1596 4830 100 Plus
3R 31820162 3R 30792815..30793372 1594..2151 2790 100 Plus
3R 31820162 3R 30789764..30790150 2..388 1935 100 Plus
3R 31820162 3R 30791481..30791724 387..630 1220 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:02:45 has no hits.

FI04434.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:03:31 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26871329..26871718 1..388 98 -> Plus
chr3R 26873048..26873289 389..630 100 -> Plus
chr3R 26873357..26874320 631..1594 99 -> Plus
chr3R 26874381..26874934 1595..2150 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:47:52 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 1..1791 232..2022 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:19:58 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 1..1791 232..2022 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:00:01 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 1..1791 232..2022 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:27 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 1..1791 232..2022 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 08:00:55 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 2..2150 2..2150 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:19:58 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 2..2150 2..2150 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:00:01 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 4..2153 1..2150 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-07 16:38:16 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 2..2150 2..2150 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:27 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
Aph-4-RA 4..2153 1..2150 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:31 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31048932..31049319 1..388 99 -> Plus
3R 31050652..31050893 389..630 100 -> Plus
3R 31050961..31051924 631..1594 100 -> Plus
3R 31051985..31052540 1595..2150 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:31 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31048932..31049319 1..388 99 -> Plus
3R 31050652..31050893 389..630 100 -> Plus
3R 31050961..31051924 631..1594 100 -> Plus
3R 31051985..31052540 1595..2150 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:31 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31048932..31049319 1..388 99 -> Plus
3R 31050652..31050893 389..630 100 -> Plus
3R 31050961..31051924 631..1594 100 -> Plus
3R 31051985..31052540 1595..2150 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:00:01 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26874654..26875041 1..388 99 -> Plus
arm_3R 26876374..26876615 389..630 100 -> Plus
arm_3R 26876683..26877646 631..1594 100 -> Plus
arm_3R 26877707..26878262 1595..2150 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:21 Download gff for FI04434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30789763..30790150 1..388 99 -> Plus
3R 30791483..30791724 389..630 100 -> Plus
3R 30791792..30792755 631..1594 100 -> Plus
3R 30792816..30793371 1595..2150 100   Plus

FI04434.pep Sequence

Translation from 231 to 2021

> FI04434.pep
MHCLVILGFLLGSLVAFSWAGVTTQPPPLIRTLSAGGDIGPQFDVGKTKE
PEDAEFWHNVGLRQLEKTIKQAQRVKEDSYQKKARNIIIFIGDGMGISTI
SAGRIYKGQYLKHGYGEEETLVFDDFPNTGMAKTYNVDKQVPDSAGTATA
IFSGSKTHYGAIGMDATRSKKNGQQGRVQSVMEWAQKEGKRTGVVTTTRI
THATPAATYAHIYDRDWECDTEVPAESVGFHVDIARQLVENAPGNRFNVI
LGGGMSPMGILNASEVKTTIFEGPTETICTRGDNRNLPAEWLAHHANDTV
PPALVHNRKDLLNVNVKKVDHLMGLFRNNHITYSIAREAGEPSLQEMTET
ALGILERGDESNGFVLLVEGGRIDQGHHMNYARAALHELYEFDLAIQAAV
NNTDPDETLILVTADHSHAVTFNGYALRGADILGTANSHEKNDPMFYETI
SYANGPGYWDHLANDSRPQNSSNMWMPLKHFTAEERAAPTYRHLATVPRK
DETHGGEDVAVFAYGPGSSLIRGVFEQNYLAYVMSYAGCLGPAKDFDDSC
EDHKDGQKDRPLDKPNPKRNGATVVGASLIPILTAATAAILRGRGL*

FI04434.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22935-PA 592 GF22935-PA 1..585 1..585 2753 86.8 Plus
Dana\GF17216-PA 543 GF17216-PA 59..528 50..541 880 40.3 Plus
Dana\GF14719-PA 599 GF14719-PA 66..586 9..545 871 38.3 Plus
Dana\GF10455-PA 525 GF10455-PA 39..525 44..548 818 37.6 Plus
Dana\GF23560-PA 523 GF23560-PA 29..514 43..548 810 39.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11789-PA 596 GG11789-PA 1..596 1..596 3014 93.3 Plus
Dere\GG16809-PA 546 GG16809-PA 52..530 41..540 876 40.1 Plus
Dere\GG21178-PA 596 GG21178-PA 64..583 9..545 834 37.8 Plus
Dere\GG17892-PA 487 GG17892-PA 42..478 57..555 822 38.7 Plus
Dere\GG15276-PA 517 GG15276-PA 49..510 52..541 822 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13970-PA 593 GH13970-PA 1..582 1..583 2168 68.6 Plus
Dgri\GH18436-PA 542 GH18436-PA 48..534 41..552 854 38.4 Plus
Dgri\GH12658-PA 596 GH12658-PA 73..583 4..545 846 37.2 Plus
Dgri\GH16243-PA 525 GH16243-PA 50..516 50..542 830 38.6 Plus
Dgri\GH15197-PA 525 GH15197-PA 81..521 82..544 816 41.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Alp4-PA 596 CG1462-PA 1..596 1..596 3157 100 Plus
Alp4-PB 502 CG1462-PB 1..502 95..596 2664 100 Plus
phu-PA 546 CG8147-PA 56..530 43..540 867 39.3 Plus
Alp12-PE 596 CG16771-PE 68..583 15..545 856 38.9 Plus
Alp12-PD 596 CG16771-PD 68..583 15..545 856 38.9 Plus
Alp12-PC 596 CG16771-PC 68..583 15..545 856 38.9 Plus
Alp12-PB 596 CG16771-PB 68..583 15..545 856 38.9 Plus
Alp12-PA 596 CG16771-PA 68..583 15..545 856 38.9 Plus
Alp9-PB 517 CG5150-PB 49..510 52..541 823 39 Plus
Alp9-PA 517 CG5150-PA 49..510 52..541 823 39 Plus
Alp7-PA 543 CG3292-PA 63..533 49..541 807 38.1 Plus
Alp1-PA 523 CG5656-PA 24..514 40..548 802 37.8 Plus
Alp6-PA 515 CG1809-PA 39..513 47..542 800 38.6 Plus
Alp11-PA 483 CG8105-PA 43..467 62..541 799 39 Plus
Alp8-PB 533 CG3264-PB 8..533 4..549 796 36.9 Plus
Alp8-PA 533 CG3264-PA 8..533 4..549 796 36.9 Plus
Alp5-PA 522 CG10827-PA 62..515 56..541 791 37.6 Plus
Alp10-PA 524 CG10592-PA 45..519 50..545 787 38 Plus
Alp1-PB 530 CG5656-PB 24..521 40..548 784 37.3 Plus
Alp2-PA 538 CG3290-PA 53..528 46..544 737 36.8 Plus
Alp13-PB 479 CG5361-PB 58..364 44..369 228 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22314-PA 586 GI22314-PA 15..553 18..553 2216 74.4 Plus
Dmoj\GI24012-PA 547 GI24012-PA 51..538 41..552 904 39.5 Plus
Dmoj\GI13179-PA 525 GI13179-PA 45..517 44..542 845 39.9 Plus
Dmoj\GI19888-PA 524 GI19888-PA 48..518 54..542 834 39.7 Plus
Dmoj\GI14975-PA 472 GI14975-PA 37..462 53..541 811 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13536-PA 600 GL13536-PA 1..600 1..596 2497 78 Plus
Dper\GL23248-PA 525 GL23248-PA 12..517 5..541 829 38 Plus
Dper\GL12007-PA 538 GL12007-PA 8..528 9..541 799 35.9 Plus
Dper\GL16938-PA 533 GL16938-PA 57..530 50..548 789 39 Plus
Dper\GL17170-PA 520 GL17170-PA 39..514 47..542 767 36.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13119-PA 600 GA13119-PA 1..600 1..596 2498 78 Plus
Dpse\GA13119-PB 498 GA13119-PB 1..498 95..596 2188 81.7 Plus
Dpse\GA20850-PA 543 GA20850-PA 53..527 43..540 845 39.1 Plus
Dpse\GA10582-PA 525 GA10582-PA 9..517 4..541 830 37.7 Plus
Dpse\GA10422-PA 537 GA10422-PA 8..529 9..542 810 36 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12919-PA 596 GM12919-PA 1..596 1..596 3121 96.8 Plus
Dsec\GM23808-PA 546 GM23808-PA 52..530 41..540 871 39.7 Plus
Dsec\GM17344-PA 583 GM17344-PA 64..579 9..541 846 38.8 Plus
Dsec\GM14710-PA 517 GM14710-PA 49..510 52..541 830 39.2 Plus
Dsec\GM22140-PA 523 GM22140-PA 24..514 40..548 825 38.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21558-PA 596 GD21558-PA 1..596 1..596 3139 97.1 Plus
Dsim\GD18617-PA 546 GD18617-PA 52..530 41..540 871 39.7 Plus
Dsim\GD24203-PA 596 GD24203-PA 64..583 9..545 848 38.6 Plus
Dsim\GD17219-PA 480 GD17219-PA 25..464 45..541 818 38.7 Plus
Dsim\GD13186-PA 524 GD13186-PA 39..519 44..545 801 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10501-PA 623 GJ10501-PA 41..590 18..553 2171 72.4 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 51..537 41..552 862 37.9 Plus
Dvir\GJ15058-PA 524 GJ15058-PA 72..518 82..542 828 41.1 Plus
Dvir\GJ13410-PA 526 GJ13410-PA 52..519 47..541 811 38.5 Plus
Dvir\GJ15998-PA 604 GJ15998-PA 114..591 51..545 811 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22608-PA 594 GK22608-PA 25..593 20..588 2318 73.6 Plus
Dwil\GK10963-PA 547 GK10963-PA 54..546 43..561 867 38.5 Plus
Dwil\GK25119-PA 602 GK25119-PA 112..589 51..545 831 39 Plus
Dwil\GK11139-PA 529 GK11139-PA 62..515 55..541 829 40.1 Plus
Dwil\GK16996-PA 534 GK16996-PA 33..525 48..548 816 40.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10917-PA 596 GE10917-PA 1..591 1..591 3020 94.1 Plus
Dyak\GE25953-PA 548 GE25953-PA 54..532 41..540 887 40.9 Plus
Dyak\GE13250-PA 597 GE13250-PA 65..584 9..545 838 38.2 Plus
Dyak\GE21498-PA 517 GE21498-PA 49..510 52..541 830 38.8 Plus
Dyak\GE17198-PA 482 GE17198-PA 34..478 54..562 827 39.3 Plus

FI04434.hyp Sequence

Translation from 231 to 2021

> FI04434.hyp
MHCLVILGFLLGSLVAFSWAGVTTQPPPLIRTLSAGGDIGPQFDVGKTKE
PEDAEFWHNVGLRQLEKTIKQAQRVKEDSYQKKARNIIIFIGDGMGISTI
SAGRIYKGQYLKHGYGEEETLVFDDFPNTGMAKTYNVDKQVPDSAGTATA
IFSGSKTHYGAIGMDATRSKKNGQQGRVQSVMEWAQKEGKRTGVVTTTRI
THATPAATYAHIYDRDWECDTEVPAESVGFHVDIARQLVENAPGNRFNVI
LGGGMSPMGILNASEVKTTIFEGPTETICTRGDNRNLPAEWLAHHANDTV
PPALVHNRKDLLNVNVKKVDHLMGLFRNNHITYSIAREAGEPSLQEMTET
ALGILERGDESNGFVLLVEGGRIDQGHHMNYARAALHELYEFDLAIQAAV
NNTDPDETLILVTADHSHAVTFNGYALRGADILGTANSHEKNDPMFYETI
SYANGPGYWDHLANDSRPQNSSNMWMPLKHFTAEERAAPTYRHLATVPRK
DETHGGEDVAVFAYGPGSSLIRGVFEQNYLAYVMSYAGCLGPAKDFDDSC
EDHKDGQKDRPLDKPNPKRNGATVVGASLIPILTAATAAILRGRGL*

FI04434.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Aph-4-PA 596 CG1462-PA 1..596 1..596 3157 100 Plus
Aph-4-PB 502 CG1462-PB 1..502 95..596 2664 100 Plus
CG8147-PA 546 CG8147-PA 56..530 43..540 867 39.3 Plus
CG16771-PE 596 CG16771-PE 68..583 15..545 856 38.9 Plus
CG16771-PD 596 CG16771-PD 68..583 15..545 856 38.9 Plus