Clone FI04474 Report

Search the DGRC for FI04474

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:44
Well:74
Vector:pFlc-1
Associated Gene/Transcriptspdo-RA
Protein status:FI04474.pep: gold
Sequenced Size:2102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
spdo 2008-12-18 5.12 accounting

Clone Sequence Records

FI04474.complete Sequence

2102 bp assembled on 2008-11-07

GenBank Submission: BT057990.1

> FI04474.complete
CGGATTAGTCGAGTCGCAGTTGCCGAGGCGAGCGGATCGTGAACAGTGCT
ACGAACCCAAAGAAAACCCAAAGTAGTGAAAGAACACCCCTAAGAGGTTG
TGGAATTGCCACCAGTACAGTGCCAACATGTCGCAGCATAACTATACGAA
CCCGGCCTTCTGCCAGAACAGCGAGTATTACCCGGTGCCCAGCGGCAACT
CGTCGCGAGTGGAGTCCATCTACAACAGAAGCCTCCAGATGAACTTTGGA
GCGGCTCCTCCGCGCGCCACTCGAGATCCCCGCGAGGGTCCACTGCGAAT
GCAGCGTAGCATGTCCACGCGATCGGTGACGCGGAAACAACACCAGCAGC
AGCAGCAGCAGCAACACCAACAGCAGATACACCAGCAACACCTGGCTCAG
CAGCAGCAACACCAGCCGCAATCCTCTAGTGGTCGCTATGCCTTGGTTCC
CCTAGAGGAGCTGAACAGCAGTAGGGCCAGTAGATACGCCATAGTTCCAG
GACAGGCGGCACAGAGACTGGCCCGATCACAGGATAATCTGGATCGCTAT
GGCTCCAGACATGGATTGCACGAAGAGGAGGAGCCTCACTCCTTCCACGA
GGAACCCCATCAGGAGACCCAGTTTGCCAGCTTGCCACCGATACTTAATT
TGCCGCCCAAGCCCAGGAATATTAACAACAATACCAATGCCAATCAAACC
CAGATTAAGCATGCTTTTAGTAGCGACTTCGGCAGCAAGACCTTCTTGAT
AGTGGATAAGAATAGCAACCAGAGGTACCAGATGGTGCCCACCGCCGAGG
ACGAGGAGCTGGTAGACGAGAACCAGGAGATCATACAGATGCACAATGGC
CGCGCCCATCGATATGCAGTGGTGCCCACGGATGCGGACGACGATGATCT
GGCGGAGGAGCAGGAGCAGCAGGAAACCTGCCTGAGCAACATGGAATTGA
GCAGGCAGTACGCAGCGAGGACCTCAACGCCGCAGCAAAAGAATGCGGCT
GCCGCTACGAGGGCCCTGCACGAGCTCCTGACCACGCCCAGGAAGATGCA
GCCGCCTCCGCGATTGGCGCACTCAACGCCCCGGAACGCCGCCCACCACG
AGCAGCTGCAGCTGGAAAGGCGCTTGGAGATCTACAAAAGCCAACAGATC
TACCAAAGCCAACAAGTTGGAGCGGTAGTAGGAGTCCCTCCAACCTTGCC
ACTTCGCCAGAATCGACTCTCCCCCCAGAGACTTCACTACGAGACCGTGA
AGCCGCTTCCCATGCAGATCGCCGATCGATCCATGGCCGTCATCAGTCCC
AGGGTCCAGGAGCAGGGGCAGGAGCAGGAACGGGAACAGGACATGAGCAG
CATCCAGGGAAAGGGCAAGAAAAACAGCTCCTATCCGCAGAAGATGGCCA
ATGCCACCATTACCTTGGCCGTTGTCTCCCTGATGCTCGTCTTGGGCAGC
ACCATGAATGCGGGGCTCATCATCTACATGATAGCACACCTCGGAAAGTC
CTTTTACCTGCAGTTTAGCCTGGTGGCCTCCTTCTCCGGAATGGGACTCG
GCTTCCTGGGATTCAAGTCGCGCCACTGCGAGTGGCTGCCGAACAGGAGC
TATAGTTCCGGCTATATCCTGGTCACCGTATTTTGCCTATTCAAGTCCTG
CGGATTGCTTGTGATACTCGTGGTGGACCCCTTCCCCGGATTTCCTGTCC
ACGATGTGACCACTGGCGTCATCCTTGGACTGTCGACTTTCACCATGTTC
TTCATCGGATTGGGAGTGCTGGGCAGCTTGTGGTGCCACCGACCTCCGCC
AGACAACCGCGTCAACGTGGTCTAATACCCTGGAAATAGTTAATCCTAGA
CTCTAATTAGGTGTACACCATCCACTTCGAATTCAAGAACTTGACACACC
GAACGGCTAAAAGACCAAAAACAAGAATTAGATTTATAATCAGCGGAAGA
TCATCATCCCCCAAACGACTGTATATAACAAGTGGGTTGTACCTATTGCT
AACACTTAGTTTGCTTAACTTATTGTTCACCTAAGTATAAGTATGTTATG
GAATAAGAATAAAATAAAGGCACGTAGATACCAGCTAAAAAAAAAAAAAA
AA

FI04474.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
spdo-RA 2153 spdo-RA 32..2114 3..2085 10370 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26299197..26300684 3..1489 6970 98.1 Plus
chr3R 27901430 chr3R 26300760..26301359 1486..2085 2895 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30476688..30478174 3..1489 7405 99.9 Plus
3R 32079331 3R 30478250..30478849 1486..2085 2970 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30217519..30219005 3..1489 7405 99.8 Plus
3R 31820162 3R 30219081..30219680 1486..2085 2970 99.6 Plus
Blast to na_te.dros performed 2019-03-15 18:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..740 1378..1280 127 66.3 Minus

FI04474.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:47:18 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26299195..26299536 1..341 97 == Plus
chr3R 26299617..26300684 422..1489 98 -> Plus
chr3R 26300764..26301359 1490..2086 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:48:13 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1698 128..1825 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:20:10 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1698 128..1825 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:36 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1698 128..1825 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:12 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1698 128..1825 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 08:01:10 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1822 4..1825 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:20:10 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..2082 4..2085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:36 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 2..2087 1..2085 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-07 18:33:30 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 1..1822 4..1825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:12 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
spdo-RA 2..2087 1..2085 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30476685..30478174 1..1489 99 -> Plus
3R 30478254..30478849 1490..2086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30476685..30478174 1..1489 99 -> Plus
3R 30478254..30478849 1490..2086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30476685..30478174 1..1489 99 -> Plus
3R 30478254..30478849 1490..2086 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:36 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26302407..26303896 1..1489 99 -> Plus
arm_3R 26303976..26304571 1490..2086 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:34 Download gff for FI04474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30217516..30219005 1..1489 99 -> Plus
3R 30219085..30219680 1490..2086 99   Plus

FI04474.pep Sequence

Translation from 127 to 1824

> FI04474.pep
MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRD
PREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSS
SGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEE
EEPHSFHEEPHQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSD
FGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHNGRAHRYAVVP
TDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHEL
LTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIYKSQQIYQSQQVGAV
VGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ
EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIY
MIAHLGKSFYLQFSLVASFSGMGLGFLGFKSRHCEWLPNRSYSSGYILVT
VFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGS
LWCHRPPPDNRVNVV*

FI04474.pep Blast Records

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14100-PA 579 GH14100-PA 1..579 1..565 2039 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
spdo-PA 565 CG31020-PA 1..565 1..565 2947 100 Plus
Ptip-PA 2294 CG32133-PA 846..1187 48..412 165 21.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24859-PA 568 GI24859-PA 1..568 1..565 2076 74.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13461-PA 584 GL13461-PA 1..584 1..565 2247 79.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15944-PB 586 GA15944-PB 1..586 1..565 2245 79.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24501-PA 655 GJ24501-PA 93..655 1..565 2141 77.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10880-PA 589 GE10880-PA 1..589 1..565 2875 93.4 Plus

FI04474.hyp Sequence

Translation from 127 to 1824

> FI04474.hyp
MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRD
PREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSS
SGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEE
EEPHSFHEEPHQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSD
FGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHNGRAHRYAVVP
TDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHEL
LTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIYKSQQIYQSQQVGAV
VGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ
EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIY
MIAHLGKSFYLQFSLVASFSGMGLGFLGFKSRHCEWLPNRSYSSGYILVT
VFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGS
LWCHRPPPDNRVNVV*

FI04474.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
spdo-PA 565 CG31020-PA 1..565 1..565 2947 100 Plus
ptip-PA 2294 CG32133-PA 846..1187 48..412 165 21.7 Plus