Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI04474.complete Sequence
2102 bp assembled on 2008-11-07
GenBank Submission: BT057990.1
> FI04474.complete
CGGATTAGTCGAGTCGCAGTTGCCGAGGCGAGCGGATCGTGAACAGTGCT
ACGAACCCAAAGAAAACCCAAAGTAGTGAAAGAACACCCCTAAGAGGTTG
TGGAATTGCCACCAGTACAGTGCCAACATGTCGCAGCATAACTATACGAA
CCCGGCCTTCTGCCAGAACAGCGAGTATTACCCGGTGCCCAGCGGCAACT
CGTCGCGAGTGGAGTCCATCTACAACAGAAGCCTCCAGATGAACTTTGGA
GCGGCTCCTCCGCGCGCCACTCGAGATCCCCGCGAGGGTCCACTGCGAAT
GCAGCGTAGCATGTCCACGCGATCGGTGACGCGGAAACAACACCAGCAGC
AGCAGCAGCAGCAACACCAACAGCAGATACACCAGCAACACCTGGCTCAG
CAGCAGCAACACCAGCCGCAATCCTCTAGTGGTCGCTATGCCTTGGTTCC
CCTAGAGGAGCTGAACAGCAGTAGGGCCAGTAGATACGCCATAGTTCCAG
GACAGGCGGCACAGAGACTGGCCCGATCACAGGATAATCTGGATCGCTAT
GGCTCCAGACATGGATTGCACGAAGAGGAGGAGCCTCACTCCTTCCACGA
GGAACCCCATCAGGAGACCCAGTTTGCCAGCTTGCCACCGATACTTAATT
TGCCGCCCAAGCCCAGGAATATTAACAACAATACCAATGCCAATCAAACC
CAGATTAAGCATGCTTTTAGTAGCGACTTCGGCAGCAAGACCTTCTTGAT
AGTGGATAAGAATAGCAACCAGAGGTACCAGATGGTGCCCACCGCCGAGG
ACGAGGAGCTGGTAGACGAGAACCAGGAGATCATACAGATGCACAATGGC
CGCGCCCATCGATATGCAGTGGTGCCCACGGATGCGGACGACGATGATCT
GGCGGAGGAGCAGGAGCAGCAGGAAACCTGCCTGAGCAACATGGAATTGA
GCAGGCAGTACGCAGCGAGGACCTCAACGCCGCAGCAAAAGAATGCGGCT
GCCGCTACGAGGGCCCTGCACGAGCTCCTGACCACGCCCAGGAAGATGCA
GCCGCCTCCGCGATTGGCGCACTCAACGCCCCGGAACGCCGCCCACCACG
AGCAGCTGCAGCTGGAAAGGCGCTTGGAGATCTACAAAAGCCAACAGATC
TACCAAAGCCAACAAGTTGGAGCGGTAGTAGGAGTCCCTCCAACCTTGCC
ACTTCGCCAGAATCGACTCTCCCCCCAGAGACTTCACTACGAGACCGTGA
AGCCGCTTCCCATGCAGATCGCCGATCGATCCATGGCCGTCATCAGTCCC
AGGGTCCAGGAGCAGGGGCAGGAGCAGGAACGGGAACAGGACATGAGCAG
CATCCAGGGAAAGGGCAAGAAAAACAGCTCCTATCCGCAGAAGATGGCCA
ATGCCACCATTACCTTGGCCGTTGTCTCCCTGATGCTCGTCTTGGGCAGC
ACCATGAATGCGGGGCTCATCATCTACATGATAGCACACCTCGGAAAGTC
CTTTTACCTGCAGTTTAGCCTGGTGGCCTCCTTCTCCGGAATGGGACTCG
GCTTCCTGGGATTCAAGTCGCGCCACTGCGAGTGGCTGCCGAACAGGAGC
TATAGTTCCGGCTATATCCTGGTCACCGTATTTTGCCTATTCAAGTCCTG
CGGATTGCTTGTGATACTCGTGGTGGACCCCTTCCCCGGATTTCCTGTCC
ACGATGTGACCACTGGCGTCATCCTTGGACTGTCGACTTTCACCATGTTC
TTCATCGGATTGGGAGTGCTGGGCAGCTTGTGGTGCCACCGACCTCCGCC
AGACAACCGCGTCAACGTGGTCTAATACCCTGGAAATAGTTAATCCTAGA
CTCTAATTAGGTGTACACCATCCACTTCGAATTCAAGAACTTGACACACC
GAACGGCTAAAAGACCAAAAACAAGAATTAGATTTATAATCAGCGGAAGA
TCATCATCCCCCAAACGACTGTATATAACAAGTGGGTTGTACCTATTGCT
AACACTTAGTTTGCTTAACTTATTGTTCACCTAAGTATAAGTATGTTATG
GAATAAGAATAAAATAAAGGCACGTAGATACCAGCTAAAAAAAAAAAAAA
AA
FI04474.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spdo-RA | 2153 | spdo-RA | 32..2114 | 3..2085 | 10370 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 26299197..26300684 | 3..1489 | 6970 | 98.1 | Plus |
chr3R | 27901430 | chr3R | 26300760..26301359 | 1486..2085 | 2895 | 98.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30476688..30478174 | 3..1489 | 7405 | 99.9 | Plus |
3R | 32079331 | 3R | 30478250..30478849 | 1486..2085 | 2970 | 99.7 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 30217519..30219005 | 3..1489 | 7405 | 99.8 | Plus |
3R | 31820162 | 3R | 30219081..30219680 | 1486..2085 | 2970 | 99.6 | Plus |
Blast to na_te.dros performed 2019-03-15 18:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..740 | 1378..1280 | 127 | 66.3 | Minus |
FI04474.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:47:18 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 26299195..26299536 | 1..341 | 97 | == | Plus |
chr3R | 26299617..26300684 | 422..1489 | 98 | -> | Plus |
chr3R | 26300764..26301359 | 1490..2086 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:48:13 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1698 | 128..1825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:20:10 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1698 | 128..1825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:36 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1698 | 128..1825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:12 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1698 | 128..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 08:01:10 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1822 | 4..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:20:10 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..2082 | 4..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:36 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 2..2087 | 1..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-07 18:33:30 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 1..1822 | 4..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:12 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spdo-RA | 2..2087 | 1..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30476685..30478174 | 1..1489 | 99 | -> | Plus |
3R | 30478254..30478849 | 1490..2086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30476685..30478174 | 1..1489 | 99 | -> | Plus |
3R | 30478254..30478849 | 1490..2086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:18 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30476685..30478174 | 1..1489 | 99 | -> | Plus |
3R | 30478254..30478849 | 1490..2086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:36 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26302407..26303896 | 1..1489 | 99 | -> | Plus |
arm_3R | 26303976..26304571 | 1490..2086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:34 Download gff for
FI04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30217516..30219005 | 1..1489 | 99 | -> | Plus |
3R | 30219085..30219680 | 1490..2086 | 99 | | Plus |
FI04474.pep Sequence
Translation from 127 to 1824
> FI04474.pep
MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRD
PREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSS
SGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEE
EEPHSFHEEPHQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSD
FGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHNGRAHRYAVVP
TDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHEL
LTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIYKSQQIYQSQQVGAV
VGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ
EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIY
MIAHLGKSFYLQFSLVASFSGMGLGFLGFKSRHCEWLPNRSYSSGYILVT
VFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGS
LWCHRPPPDNRVNVV*
FI04474.pep Blast Records
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH14100-PA | 579 | GH14100-PA | 1..579 | 1..565 | 2039 | 74.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spdo-PA | 565 | CG31020-PA | 1..565 | 1..565 | 2947 | 100 | Plus |
Ptip-PA | 2294 | CG32133-PA | 846..1187 | 48..412 | 165 | 21.7 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI24859-PA | 568 | GI24859-PA | 1..568 | 1..565 | 2076 | 74.5 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL13461-PA | 584 | GL13461-PA | 1..584 | 1..565 | 2247 | 79.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA15944-PB | 586 | GA15944-PB | 1..586 | 1..565 | 2245 | 79.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ24501-PA | 655 | GJ24501-PA | 93..655 | 1..565 | 2141 | 77.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10880-PA | 589 | GE10880-PA | 1..589 | 1..565 | 2875 | 93.4 | Plus |
FI04474.hyp Sequence
Translation from 127 to 1824
> FI04474.hyp
MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRD
PREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSS
SGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEE
EEPHSFHEEPHQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSD
FGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHNGRAHRYAVVP
TDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHEL
LTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIYKSQQIYQSQQVGAV
VGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ
EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIY
MIAHLGKSFYLQFSLVASFSGMGLGFLGFKSRHCEWLPNRSYSSGYILVT
VFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGS
LWCHRPPPDNRVNVV*
FI04474.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spdo-PA | 565 | CG31020-PA | 1..565 | 1..565 | 2947 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 846..1187 | 48..412 | 165 | 21.7 | Plus |