Clone FI04548 Report

Search the DGRC for FI04548

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:45
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCG5835-RA
Protein status:FI04548.pep: gold
Sequenced Size:1350

Clone Sequence Records

FI04548.complete Sequence

1350 bp assembled on 2009-06-24

GenBank Submission: BT088859.1

> FI04548.complete
GATTCCGCACGGAAAGCTCGTCGCGAACGCACGTAAAACTGGCAAGGCGG
AGAAATATAACAAACATTTACAATTTGGCCCGCAGAATAAGCCGAACGAG
CGCTTAATCATCGAAAAGTATCCAGCGATCGAGTGGCGCGTAACCTGTGC
GTGAGTGATAAGGAGCTAATTGATAAAGGAAGTGACGACGGTGCCCGCAT
ATCTACATAAATTCGCAATATGATGGCACTGCGGAAAACTTTGGTCTTCA
ACAGTGCGCTTCTGTTGGTTCTGCTGCTGGCGGAGTCCCAAGCCAAGCCC
TCGCAGGATTTAAACAAACCGCAGACGAAGGAGCCAAGTGATCTGGGTGC
AGGAGCTGGAGCAGCACGAGGAGTGCCGGTGGCTGCCAAAAATAAGACAG
CTGTCGTGGAGGATACTTCCGACGATTCCGACTCAGAGGCGGAATCGGAG
GAGCAGCAGCGGCGGTCATATCCCCACCGCGACGAGGACCAACTGAACTC
GGCCACCAATTTGGTTTTGGCACAGAACTACAAGTACGATGTGGAGATCC
TGGAATCCGGCGATGCCGACCAAGACGACAGTAGCATGGATGACGTGGAC
GATCTGGAGGAGCGTTTCAAGGGACGCGGTGTGATCTTCAGCACGGACAC
CGAAACCTTCGCCAACGAGAACATCGAGATGAGCCCGCTGAACGTGCAGG
CGGATGCGGTTAGCCAGGGACATGTGCTGCTCGGCATCGTGGTGGTGGCA
CTGGCCTTGGTCTCCATCGGCCTGTACGCCGGCCTGGTCATATGGCGCTC
GCACCTGGAGCAGCGGTATGGAATGCGCGAACGACTGGTCAATCACGACT
TGGAGGATGAAGCGGCTGGTGTCGACGACGTCGATTATCAGGTCTATGCG
CCAACCACGACGGCAGCTACGCCTAGGGCGTAGTCCGTTTCGAAATCTGG
TCCGATTCGATTCGATCCGATACGACGGTGGGCTTCAATTGGACCTGGTT
TCGGTTTAAAGTGCACACTCACCACACAATTCAGACGAGACGACGACGAT
GGCAATTCATTGCAGCCTCAGCTAGGATGGTGGTGGAGAGACGGTGCTCA
ATCGTCTAATGTATGCCATAAATTTCCACGACAAGCTGAAAAGCATTCCG
CTTCCCAATTACACTCTAATGGCGTTGCTAAAGGTCACGCCGATTTCTAA
CAGCGCAGTTGACAAGACCAATTAGTTAGTAAGTTTCTGTGATATTGTTC
TAGAGATTCTTTTGTACGTCCTTGCACTAACAATACGCATAGAACCCACG
TTGCTAATCGATAATAAAAACTATATGTAAATGCAAAAAAAAAAAAAAAA

FI04548.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5835-RA 1338 CG5835-RA 1..1336 2..1337 6650 99.8 Plus
CG11779-RC 2495 CG11779-RC 1440..2490 287..1337 5225 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14972616..14973139 1333..810 2590 99.6 Minus
chr3R 27901430 chr3R 14973212..14973615 810..410 1880 98.3 Minus
chr3R 27901430 chr3R 14977351..14977635 286..2 1395 99.3 Minus
chr3R 27901430 chr3R 14975438..14975563 412..287 600 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:13:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19148634..19149161 1337..810 2625 99.8 Minus
3R 32079331 3R 19149234..19149634 810..410 1990 99.8 Minus
3R 32079331 3R 19153396..19153680 286..2 1425 100 Minus
3R 32079331 3R 19151488..19151613 412..287 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18889465..18889992 1337..810 2625 99.8 Minus
3R 31820162 3R 18890065..18890465 810..410 1990 99.7 Minus
3R 31820162 3R 18894227..18894511 286..2 1425 100 Minus
3R 31820162 3R 18892319..18892444 412..287 630 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:16:38 has no hits.

FI04548.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:17:23 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14975439..14975563 287..411 98 <- Minus
chr3R 14972615..14973139 810..1334 99 <- Minus
chr3R 14973213..14973613 412..809 98 <- Minus
chr3R 14977351..14977635 1..286 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:00 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..714 220..933 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:48:41 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..714 220..933 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:18 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..714 220..933 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:02:06 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..714 220..933 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-25 12:21:39 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..1332 2..1334 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:48:41 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 1..1332 2..1334 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:18 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 6..1338 1..1334 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:02:06 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG5835-RA 6..1338 1..1334 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:23 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148637..19149161 810..1334 99 <- Minus
3R 19149235..19149632 412..809 99 <- Minus
3R 19151489..19151613 287..411 100 <- Minus
3R 19153396..19153680 1..286 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:23 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148637..19149161 810..1334 99 <- Minus
3R 19149235..19149632 412..809 99 <- Minus
3R 19151489..19151613 287..411 100 <- Minus
3R 19153396..19153680 1..286 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:23 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148637..19149161 810..1334 99 <- Minus
3R 19149235..19149632 412..809 99 <- Minus
3R 19151489..19151613 287..411 100 <- Minus
3R 19153396..19153680 1..286 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:18 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14974359..14974883 810..1334 99 <- Minus
arm_3R 14974957..14975354 412..809 99 <- Minus
arm_3R 14977211..14977335 287..411 100 <- Minus
arm_3R 14979118..14979402 1..286 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:19 Download gff for FI04548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18889468..18889992 810..1334 99 <- Minus
3R 18890066..18890463 412..809 99 <- Minus
3R 18892320..18892444 287..411 100 <- Minus
3R 18894227..18894511 1..286 99   Minus

FI04548.hyp Sequence

Translation from 219 to 932

> FI04548.hyp
MMALRKTLVFNSALLLVLLLAESQAKPSQDLNKPQTKEPSDLGAGAGAAR
GVPVAAKNKTAVVEDTSDDSDSEAESEEQQRRSYPHRDEDQLNSATNLVL
AQNYKYDVEILESGDADQDDSSMDDVDDLEERFKGRGVIFSTDTETFANE
NIEMSPLNVQADAVSQGHVLLGIVVVALALVSIGLYAGLVIWRSHLEQRY
GMRERLVNHDLEDEAAGVDDVDYQVYAPTTTAATPRA*

FI04548.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5835-PA 237 CG5835-PA 1..237 1..237 1186 100 Plus

FI04548.pep Sequence

Translation from 219 to 932

> FI04548.pep
MMALRKTLVFNSALLLVLLLAESQAKPSQDLNKPQTKEPSDLGAGAGAAR
GVPVAAKNKTAVVEDTSDDSDSEAESEEQQRRSYPHRDEDQLNSATNLVL
AQNYKYDVEILESGDADQDDSSMDDVDDLEERFKGRGVIFSTDTETFANE
NIEMSPLNVQADAVSQGHVLLGIVVVALALVSIGLYAGLVIWRSHLEQRY
GMRERLVNHDLEDEAAGVDDVDYQVYAPTTTAATPRA*

FI04548.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18941-PA 222 GF18941-PA 1..222 2..237 726 66.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16163-PA 238 GG16163-PA 1..238 2..237 905 87 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18478-PA 210 GH18478-PA 59..210 90..237 413 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5835-PA 237 CG5835-PA 1..237 1..237 1186 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24056-PA 206 GI24056-PA 23..191 23..230 398 51 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23706-PA 195 GL23706-PA 26..195 69..237 511 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19166-PB 233 GA19166-PB 5..233 6..237 516 60 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10045-PA 237 GM10045-PA 1..237 2..237 909 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20132-PA 237 GD20132-PA 1..237 2..237 878 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23682-PA 205 GJ23682-PA 1..191 2..230 433 50.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13238-PA 221 GK13238-PA 9..221 9..237 580 57.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25150-PA 236 GE25150-PA 1..236 2..237 842 86.9 Plus