Clone FI04555 Report

Search the DGRC for FI04555

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:45
Well:55
Vector:pFlc-1
Associated Gene/TranscriptTAF1B-RA
Protein status:FI04555.pep: gold
Sequenced Size:2947

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6241 2008-12-18 5.12 accounting

Clone Sequence Records

FI04555.complete Sequence

2947 bp assembled on 2008-09-25

GenBank Submission: BT057993.1

> FI04555.complete
ATAGATCATTCCCCACCACTATCACATGCACGATTTGTGTACAACCGCGA
GTTTGATTAATAATATAATTTAAATCTGATACCGTCAAGAGAAAGTCCCA
AAAATGGAGGAAGTTCTCGAGACGATGCAGCTGGAGAACATGCACTGCGA
TGTGTGCGAGGGTACCACCTTCCAGGAGCGCGAGGGATTCTACTACTGCG
TAGAGTGTGGCACACAGAAGGATCAGATTCGTGCAGTGGACATTACCGCC
GAGGATAACTTTGATGACACGGCAGCAGGCCGATATACAGCCAGGACGAT
CCGACAGAAGAAGGATACGGAGAAGGAGGATGAGGACGATATCACCTCGT
GGGAATTCTACAACTACGTGCTGCGCGGCTTCCTCCAGGAGCTGCTCAAC
ATGGGCGCCAAGCCGGAGCTCAAACTGATGACCCTGCAAGTGTGGGCGGC
TTACTTGGACAGCATGGAGGTGGCCTTCAGCAAGAGCAACAAGACGGGAC
TGCCTAAACTGAATGTGCGGGCGCTGCCCATAGATGCCCGCATCATCTAC
AACCATAAGACATTCAAGAAAGGCAAAAAGGGCAAGAAGAGCACTCTAAC
GGGTGACCCAAATGACGAGCGCGCCAAGTTCAGATTGTGGAACAGAACTA
AGCGCAATCTAGACGCCTCCGGCTACCGCTCGCACGGAGGAGCTTCAGAG
TCCGAAGGGGAGCAGAGTCTCCACCTGCAATGGTCAATGCGTGCACGCAA
GTCCTTGAAGCGCCATATGCCGCTGAAGCACCTGGACAAGCATAGCCGCG
ACAGCAAGGGTAGTATGTCGTGCCACAGCTTGAGACCGAGGGTCAAGCAG
CTCCACAATTTTGATCGTAACATCTACTGCCTGAATATTATCAAGTTGTA
TGTGGTGCTGGGCATAGCCCTTAATATGGTGGAGGATGATATACAGCTAT
CGGACTTGCTGCGCTTCATTGATGAGGAGCACTTGACCAAGCGGTGCATG
CTTAACTATCTGCCCGGAAATGTGGCGGCCAAGGGCAAGGCACTGCTCAA
AGATATGGAGCTCAGCAAAATGAAAGACAAGGTTACCAACAAGCTTCTGC
GTGTAAACATCGCGTGTATGTCACGATTCATAAACTTGTCTGAATATCAA
AAACCGAACCTGCACTCCCTAGCGGAGCGATATATTCTGGAGTTGGCACT
GCCACCTCGGCTACTGAAGTACGTGAATAGCCTGCTTGACCTGCATCCGC
CCACTTTTTTTAACGCCATGACCGTACATCCGTATCCGCGCTATGAGGCC
AGGACTATGGCCTACATCCTCTACGCCATGAAGTTGCTCTTCGGCTTGGA
CGATCTCAAGGAGCGGAATATATCTGAATCGGCCGCTAAAATCAATGAAA
AACTGCTGGAAGTCGGCGGAGATGAGGCTCCCTTGCTTTTTGTTTTTACC
GAGTGGATGGAGTTTGTGGAGATGAGGAAAGTGATTGTCTCACATTACAA
CCAAAGTTTTGCCCGTCGCTTCGGGGTATCCACCCGGACTGGTTGTCAGG
TGGACGACATACTGGCAAAGGAGTGGAAAGAGAAGGAGCAAGGCGAAACC
TTTGGCTGGATGCAGGGATCTGCGGCAATGAAGCGTCAGCATGAAAACCT
GACACACATTATTGAAACCATGCTGAAGGACCATTTTGGCGAGTCCAGCA
AAGAAAGTATGGAGAAGGAACACATTGAATTCCAGCCCAGCTTGACTCCG
GCTCACTCCTACTTCAACAGAATCCTACTCCAAGTATCGCGGTCTGATGG
TGCAAAAATGAAAATCACAATTCCTGACCACATGAAAGTGGATCACTCGG
CCCGCAACCTGGATCCCTTTGTGCTGGAAACGACCGAGCTGTCGCAGTAT
TTGTCCCAACATGGCCTTAAACTACGAGTAGAGGAGCTTGCCTGCCAGGA
GGACATCCAAAACGTGGGCATATTCCGCCCACTAACAATAATCCGAGGTG
ACGGTCGAGAATACCGCGCCAACACTGAAATTAAAACCGAGACGTGGATA
AGCGAGCTAAAGCGTAAGGAGAAACGGCCGGACTTTCGGTTCACACAGCC
CACTGGAACCTATGGAGCCCGATATTTGAAACGTATAACAATGCGCGACG
CAAGGCGTGTGCAACTTGAGATAAATAATCCGTTTTGGGATGTTACCGAA
ACGCCCAGCTTTCTTCTCAAACTCAACGATAACGAGATACCACTTGACAG
CCTTAGCTCACTGCAAACCTTCGAGGAAGGGACCATGGATCCATTAAACA
TCCCTCTAGATCTGCCCCGTCGCAATCTGGAAAAAATTTTGAATCCGGAA
GGTTCTGATAGAGCATCAGACCAAGTAGCGAGCGATATCAATGATGAGCC
GCCAAGCCCTGAGACGCTGTTATTGCAAGTGTCAAATTTTGATTGCTGGC
TTCTACACGGCTATATGAAAAGAATTCGGAGGCATGACAAGCATGAACTG
CGTCAGTTGTTCCCCTGTTCCTTCCGTTGGCTCTTGGAGACGTGTGCCAG
CACAATAGGCATAGTCTGGGAGGAGCTCTACGAGGAACTGCTCATTGTGG
AAGTGATGTACCATCACAGCATCAGGGACTGGAGCAATCATAGGAACTAT
CTGTGTATTCAACACAATACTCAAGAGAAGGACATCCGAACCCTCGCCAG
GACGTACAAGGAGTTATGGTAGTATATTAGAAGTATTAAAAGTTTTGAAT
TAACAAACAACGATGCCATCTGTATAAAATATAATATTCTTCTACGTAGT
GCTCTACCTCAAATGATAGATTTTCTTTTTGTGTATATAACCTGTAGAAA
TCTTTCAACAGTGATTATGATGCAAATAAATCTGTGTGTTAAGCAGTTAC
CAAAGTACAAACATGACACACCCACTACGCCAAAAAAAAAAAAAAAA

FI04555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6241.a 3529 CG6241.a 138..3070 1..2933 14650 99.9 Plus
CG6241-RA 3148 CG6241-RA 138..3070 1..2933 14650 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5966337..5968174 2929..1092 9100 99.7 Minus
chr3R 27901430 chr3R 5969418..5969948 531..1 2565 98.9 Minus
chr3R 27901430 chr3R 5968268..5968710 1093..651 2215 100 Minus
chr3R 27901430 chr3R 5969242..5969362 652..532 605 100 Minus
chr3R 27901430 chr3R 5969137..5969212 652..577 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:13:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10140559..10142400 2933..1092 9195 99.9 Minus
3R 32079331 3R 10143644..10144174 531..1 2655 100 Minus
3R 32079331 3R 10142494..10142936 1093..651 2215 100 Minus
3R 32079331 3R 10143468..10143588 652..532 605 100 Minus
3R 32079331 3R 10143363..10143438 652..577 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9881390..9883231 2933..1092 9195 99.9 Minus
3R 31820162 3R 9884475..9885005 531..1 2655 100 Minus
3R 31820162 3R 9883325..9883767 1093..651 2215 100 Minus
3R 31820162 3R 9884299..9884419 652..532 605 100 Minus
3R 31820162 3R 9884194..9884269 652..577 380 100 Minus
Blast to na_te.dros performed 2019-03-16 13:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4028..4095 2721..2788 132 69.6 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 6926..7020 1470..1381 120 64.6 Minus

FI04555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:13:04 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5966335..5968172 1094..2931 99 <- Minus
chr3R 5968268..5968708 653..1093 100 <- Minus
chr3R 5969242..5969362 532..652 100 <- Minus
chr3R 5969418..5969948 1..531 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:48:42 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2619 104..2722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:13:49 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2619 104..2722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:28:46 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2619 104..2722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:53 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
TAF1B-RA 1..2619 104..2722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:51:55 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2813 1..2813 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:13:48 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2931 1..2931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:28:46 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 11..2941 1..2931 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 18:10:52 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6241-RA 1..2813 1..2813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:53 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
TAF1B-RA 11..2941 1..2931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:04 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10143468..10143588 532..652 100 <- Minus
3R 10140561..10142398 1094..2931 99 <- Minus
3R 10142494..10142934 653..1093 100 <- Minus
3R 10143644..10144174 1..531 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:04 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10143468..10143588 532..652 100 <- Minus
3R 10140561..10142398 1094..2931 99 <- Minus
3R 10142494..10142934 653..1093 100 <- Minus
3R 10143644..10144174 1..531 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:04 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10143468..10143588 532..652 100 <- Minus
3R 10140561..10142398 1094..2931 99 <- Minus
3R 10142494..10142934 653..1093 100 <- Minus
3R 10143644..10144174 1..531 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:28:46 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5969190..5969310 532..652 100 <- Minus
arm_3R 5966283..5968120 1094..2931 99 <- Minus
arm_3R 5968216..5968656 653..1093 100 <- Minus
arm_3R 5969366..5969896 1..531 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:44:25 Download gff for FI04555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9881392..9883229 1094..2931 99 <- Minus
3R 9883325..9883765 653..1093 100 <- Minus
3R 9884299..9884419 532..652 100 <- Minus
3R 9884475..9885005 1..531 100   Minus

FI04555.pep Sequence

Translation from 103 to 2721

> FI04555.pep
MEEVLETMQLENMHCDVCEGTTFQEREGFYYCVECGTQKDQIRAVDITAE
DNFDDTAAGRYTARTIRQKKDTEKEDEDDITSWEFYNYVLRGFLQELLNM
GAKPELKLMTLQVWAAYLDSMEVAFSKSNKTGLPKLNVRALPIDARIIYN
HKTFKKGKKGKKSTLTGDPNDERAKFRLWNRTKRNLDASGYRSHGGASES
EGEQSLHLQWSMRARKSLKRHMPLKHLDKHSRDSKGSMSCHSLRPRVKQL
HNFDRNIYCLNIIKLYVVLGIALNMVEDDIQLSDLLRFIDEEHLTKRCML
NYLPGNVAAKGKALLKDMELSKMKDKVTNKLLRVNIACMSRFINLSEYQK
PNLHSLAERYILELALPPRLLKYVNSLLDLHPPTFFNAMTVHPYPRYEAR
TMAYILYAMKLLFGLDDLKERNISESAAKINEKLLEVGGDEAPLLFVFTE
WMEFVEMRKVIVSHYNQSFARRFGVSTRTGCQVDDILAKEWKEKEQGETF
GWMQGSAAMKRQHENLTHIIETMLKDHFGESSKESMEKEHIEFQPSLTPA
HSYFNRILLQVSRSDGAKMKITIPDHMKVDHSARNLDPFVLETTELSQYL
SQHGLKLRVEELACQEDIQNVGIFRPLTIIRGDGREYRANTEIKTETWIS
ELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLEINNPFWDVTET
PSFLLKLNDNEIPLDSLSSLQTFEEGTMDPLNIPLDLPRRNLEKILNPEG
SDRASDQVASDINDEPPSPETLLLQVSNFDCWLLHGYMKRIRRHDKHELR
QLFPCSFRWLLETCASTIGIVWEELYEELLIVEVMYHHSIRDWSNHRNYL
CIQHNTQEKDIRTLARTYKELW*

FI04555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18134-PA 862 GF18134-PA 1..862 1..872 2635 59.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17298-PA 872 GG17298-PA 1..872 1..872 4177 88.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13399-PA 904 GH13399-PA 5..904 6..872 2496 53.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
TAF1B-PC 872 CG6241-PC 1..872 1..872 4596 100 Plus
TAF1B-PA 872 CG6241-PA 1..872 1..872 4596 100 Plus
TAF1B-PB 661 CG6241-PB 1..661 212..872 3476 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22386-PA 876 GI22386-PA 1..876 1..872 2600 55.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23673-PA 869 GL23673-PA 5..869 6..872 2508 55 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19467-PA 869 GA19467-PA 5..869 6..872 2519 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26182-PA 861 GM26182-PA 1..861 1..872 4309 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20731-PA 701 GD20731-PA 13..701 184..872 3574 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24419-PA 878 GJ24419-PA 5..878 6..872 2615 56.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11430-PA 881 GK11430-PA 1..881 1..872 2609 56.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24701-PA 872 GE24701-PA 1..872 1..872 4174 89.6 Plus

FI04555.hyp Sequence

Translation from 103 to 2721

> FI04555.hyp
MEEVLETMQLENMHCDVCEGTTFQEREGFYYCVECGTQKDQIRAVDITAE
DNFDDTAAGRYTARTIRQKKDTEKEDEDDITSWEFYNYVLRGFLQELLNM
GAKPELKLMTLQVWAAYLDSMEVAFSKSNKTGLPKLNVRALPIDARIIYN
HKTFKKGKKGKKSTLTGDPNDERAKFRLWNRTKRNLDASGYRSHGGASES
EGEQSLHLQWSMRARKSLKRHMPLKHLDKHSRDSKGSMSCHSLRPRVKQL
HNFDRNIYCLNIIKLYVVLGIALNMVEDDIQLSDLLRFIDEEHLTKRCML
NYLPGNVAAKGKALLKDMELSKMKDKVTNKLLRVNIACMSRFINLSEYQK
PNLHSLAERYILELALPPRLLKYVNSLLDLHPPTFFNAMTVHPYPRYEAR
TMAYILYAMKLLFGLDDLKERNISESAAKINEKLLEVGGDEAPLLFVFTE
WMEFVEMRKVIVSHYNQSFARRFGVSTRTGCQVDDILAKEWKEKEQGETF
GWMQGSAAMKRQHENLTHIIETMLKDHFGESSKESMEKEHIEFQPSLTPA
HSYFNRILLQVSRSDGAKMKITIPDHMKVDHSARNLDPFVLETTELSQYL
SQHGLKLRVEELACQEDIQNVGIFRPLTIIRGDGREYRANTEIKTETWIS
ELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLEINNPFWDVTET
PSFLLKLNDNEIPLDSLSSLQTFEEGTMDPLNIPLDLPRRNLEKILNPEG
SDRASDQVASDINDEPPSPETLLLQVSNFDCWLLHGYMKRIRRHDKHELR
QLFPCSFRWLLETCASTIGIVWEELYEELLIVEVMYHHSIRDWSNHRNYL
CIQHNTQEKDIRTLARTYKELW*

FI04555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
TAF1B-PC 872 CG6241-PC 1..872 1..872 4596 100 Plus
TAF1B-PA 872 CG6241-PA 1..872 1..872 4596 100 Plus
TAF1B-PB 661 CG6241-PB 1..661 212..872 3476 100 Plus