Clone FI04609 Report

Search the DGRC for FI04609

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:46
Well:9
Vector:pFlc-1
Associated Gene/Transcriptb6-RA
Protein status:FI04609.pep: gold
Sequenced Size:2153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
b6 2008-12-18 5.12 accounting

Clone Sequence Records

FI04609.complete Sequence

2153 bp assembled on 2008-10-27

GenBank Submission: BT050466.1

> FI04609.complete
GAGTGAAGTGCGAGACATCGCGGCAATCGGACGTTACAGACGCGTGGAAG
ATTGAATCTTCAAGACCCGGTCCCAGGCCCAGACCCAGACCCAGACCGAG
ACTAGGATCACAGCCAAAATCAATTGGAGTGACAGTAACCCAATAAACGA
AATGGCGCAGCGGCTTCATCTAGCGCTGGTCGGTGTGGTGCTCCTAAACG
CGACCGCCTCCTTCGCCTGGAAGCCCATCGTTGGCGGCGGCAGCGGGATT
AGCGGCGGCACTGCCGCCTACAGCCTCAAGCAATCGCATCCAGGGGCGGC
GAGCAGTAGCCATGAAATATCCACCAGCTTCTCGCAGTTCGGCGGCGACA
AGGAGACCACCGAAGTCGAGGACGAGCTCTTGCTGGGTCGCGCTGCCATT
GTGAACGGCGTCGATTCCAGTGCAGCGGTGTCCCATCCAATCAGCTTTGC
TGACCACTTGGAGGACCAGTACGAGTCGTACAGCATCGAGGACGAGGCGC
CCAAAGAGCCGCTGGCCTTCCCGCGGTCTCCAGTGTACGGCTCCGATCGC
TGCAGCGTCAAGAAGTTCGCCTTCAATCAGGACGGCGAGGTGGAGTACGG
CAATCCGATGCCGGAACTGGACCAGTTTACTATCTGCTTTTGGATGCGAT
TCACTAACCACAGCGGCGACCACGTCCTCTTGACCTACGAGGCTGGAAAG
GAACCACGCGAGGTGCAAATCTGGGTCGCAAATGCGCAGAATTCCAGTTT
CCTTTCGATGGCCATAAAAGGTCAGCAAATGTACAGATTGAACTACCCGT
TGAAAATGCGCCAGTGGCATCACATGTGCAGCTCGTGGAATGGCAAGACG
GGCGAGTGGCAGGCCTGGCTGAAGGCAGAACGCATTGGGCGTGGTTTCCA
CAACTCGTTGGTGGGACATAAAATCCCAGCGAATGGCAAGCTGCGCTCCG
GCGGCAGTTCGGTCACCGGCGAGGTGAGCCACGGCCTCCACTTCGAGATG
ACGCTCGTCCAGGTCTATCGGGTGGCGCTCAGTGCAGGCAAGGCGCATCG
CGACCACAAGCACCACCATGTCCACCACTTTGATCACGAGGGCCAGGAGG
TCTCCAGCACCACTCGTGCCCCACCCTCGATTAATCGTCCTCAACCCATG
CACACGCTGCTCGCCAGTGGCCAGATCCCGACCCGGGTGCGCATCAACTT
AGCCAATCCGCCGCCGACTGCAAGTGGTGCTCCCGCTCCTGGCGCGGCCG
GAGCTCCGACCGATTCCGCCCAGCAGGCCATCACCATCAACACAAATTTT
GTGAACGGACAGATAAACGCGGGATCGCGACTGGTGGCCCAGCAACTCCT
TGGCCTCTCGCCGCCGAGCGGATTGCAGCCTAGTGGCGGTGGCAAACGCT
TCCAAATGCTAAGTAACTCAGCCAACGTGCAGTTCATCGACGAAACGGAG
ACCCACATCCAGTTCAAGAGGAACACCGACGCCACTAAGAAGGTTCAGAA
GCGCGGCCTGGTGCTGCTGGACGATGGATCTGTGGTGGACGACGGTGTCG
GTTCCGGAACGGATGGGAGCTTGATTTACAACGGTCTCGCCGACTTTGGC
GGACAGCAATTTAAGCAGGATCTTACGCTCAAGATGAGCCTGGAGGAGGA
GATCAGCACGCACGACCGAGAGCCCGCCGAGGAGGAGGTAAGGGCCGTGA
TGGCCATCTGTAGCAGCTGCCACACGGAGCCTTTCCAGGGTGCCATCGTG
TTTTCGTGGAAGGATGTGCGCGAGCACATGAACAACGCCCTCAAGGGCCT
CAGTGTGGGTCCATGTGGTAACTTCTAGTTGTTCCCAAAGTTCGGATAAC
ATTCTAGTGTCCTAGGACCCCAGCTTAAGCTTTCCCAGCCCCACCCCATT
ATTTCCATATCTTTTTTTTTTCTATATATGTACGAATAAGTATTCGATTG
GTTGGGCATCTTGTGCCACAATTGTCCATGTGGGAGTCAACGCTTTACTG
TTGCCACCCATTTGGCCACCAAACAATCCTTGACTCGCTCATGGACACCA
ATCCATCCTGCTTCCCTAAGCCCTACATCCTCACCCTAGCAATTACGCGG
TGATATTGAATAAAGGACTATTTAACTGATACCATCTAAAAAAAAAAAAA
AAA

FI04609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
b6-RA 2257 b6-RA 117..2253 2..2138 10670 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1583025..1584032 1129..2137 4980 99.8 Plus
chrX 22417052 chrX 1580473..1581163 2..692 3455 100 Plus
chrX 22417052 chrX 1582747..1582969 907..1129 1115 100 Plus
chrX 22417052 chrX 1582493..1582615 785..907 615 100 Plus
chrX 22417052 chrX 1582326..1582420 692..786 475 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1689179..1690188 1129..2138 5035 99.9 Plus
X 23542271 X 1686627..1687317 2..692 3455 100 Plus
X 23542271 X 1688901..1689123 907..1129 1115 100 Plus
X 23542271 X 1688647..1688769 785..907 615 100 Plus
X 23542271 X 1688480..1688574 692..786 475 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1697277..1698286 1129..2138 5035 99.9 Plus
X 23527363 X 1694725..1695415 2..692 3455 100 Plus
X 23527363 X 1696999..1697221 907..1129 1115 100 Plus
X 23527363 X 1696745..1696867 785..907 615 100 Plus
X 23527363 X 1696578..1696672 692..786 475 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:14:41 has no hits.

FI04609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:39 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1582748..1582969 908..1129 100 -> Plus
chrX 1580472..1581163 1..692 99 -> Plus
chrX 1582327..1582420 693..786 100 -> Plus
chrX 1582495..1582615 787..907 100 -> Plus
chrX 1583026..1584032 1130..2137 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:48:46 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 1..1677 152..1828 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:17:30 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 1..1677 152..1828 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:19 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 1..1677 152..1828 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:01 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 1..1677 152..1828 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:57:31 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 2..2137 2..2137 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:17:30 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 2..2137 2..2137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:19 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 3..2139 1..2137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-27 17:10:44 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 2..2137 2..2137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:01 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
b6-RA 3..2139 1..2137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:39 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
X 1686626..1687317 1..692 99 -> Plus
X 1688481..1688574 693..786 100 -> Plus
X 1688649..1688769 787..907 100 -> Plus
X 1688902..1689123 908..1129 100 -> Plus
X 1689180..1690187 1130..2137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:39 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
X 1686626..1687317 1..692 99 -> Plus
X 1688481..1688574 693..786 100 -> Plus
X 1688649..1688769 787..907 100 -> Plus
X 1688902..1689123 908..1129 100 -> Plus
X 1689180..1690187 1130..2137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:39 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
X 1686626..1687317 1..692 99 -> Plus
X 1688481..1688574 693..786 100 -> Plus
X 1688649..1688769 787..907 100 -> Plus
X 1688902..1689123 908..1129 100 -> Plus
X 1689180..1690187 1130..2137 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:19 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1580659..1581350 1..692 99 -> Plus
arm_X 1582514..1582607 693..786 100 -> Plus
arm_X 1582682..1582802 787..907 100 -> Plus
arm_X 1582935..1583156 908..1129 100 -> Plus
arm_X 1583213..1584220 1130..2137 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:48:36 Download gff for FI04609.complete
Subject Subject Range Query Range Percent Splice Strand
X 1696747..1696867 787..907 100 -> Plus
X 1697000..1697221 908..1129 100 -> Plus
X 1696579..1696672 693..786 100 -> Plus
X 1694724..1695415 1..692 99 -> Plus
X 1697278..1698285 1130..2137 99   Plus

FI04609.hyp Sequence

Translation from 151 to 1827

> FI04609.hyp
MAQRLHLALVGVVLLNATASFAWKPIVGGGSGISGGTAAYSLKQSHPGAA
SSSHEISTSFSQFGGDKETTEVEDELLLGRAAIVNGVDSSAAVSHPISFA
DHLEDQYESYSIEDEAPKEPLAFPRSPVYGSDRCSVKKFAFNQDGEVEYG
NPMPELDQFTICFWMRFTNHSGDHVLLTYEAGKEPREVQIWVANAQNSSF
LSMAIKGQQMYRLNYPLKMRQWHHMCSSWNGKTGEWQAWLKAERIGRGFH
NSLVGHKIPANGKLRSGGSSVTGEVSHGLHFEMTLVQVYRVALSAGKAHR
DHKHHHVHHFDHEGQEVSSTTRAPPSINRPQPMHTLLASGQIPTRVRINL
ANPPPTASGAPAPGAAGAPTDSAQQAITINTNFVNGQINAGSRLVAQQLL
GLSPPSGLQPSGGGKRFQMLSNSANVQFIDETETHIQFKRNTDATKKVQK
RGLVLLDDGSVVDDGVGSGTDGSLIYNGLADFGGQQFKQDLTLKMSLEEE
ISTHDREPAEEEVRAVMAICSSCHTEPFQGAIVFSWKDVREHMNNALKGL
SVGPCGNF*

FI04609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
b6-PA 558 CG3100-PA 1..558 1..558 2942 100 Plus

FI04609.pep Sequence

Translation from 151 to 1827

> FI04609.pep
MAQRLHLALVGVVLLNATASFAWKPIVGGGSGISGGTAAYSLKQSHPGAA
SSSHEISTSFSQFGGDKETTEVEDELLLGRAAIVNGVDSSAAVSHPISFA
DHLEDQYESYSIEDEAPKEPLAFPRSPVYGSDRCSVKKFAFNQDGEVEYG
NPMPELDQFTICFWMRFTNHSGDHVLLTYEAGKEPREVQIWVANAQNSSF
LSMAIKGQQMYRLNYPLKMRQWHHMCSSWNGKTGEWQAWLKAERIGRGFH
NSLVGHKIPANGKLRSGGSSVTGEVSHGLHFEMTLVQVYRVALSAGKAHR
DHKHHHVHHFDHEGQEVSSTTRAPPSINRPQPMHTLLASGQIPTRVRINL
ANPPPTASGAPAPGAAGAPTDSAQQAITINTNFVNGQINAGSRLVAQQLL
GLSPPSGLQPSGGGKRFQMLSNSANVQFIDETETHIQFKRNTDATKKVQK
RGLVLLDDGSVVDDGVGSGTDGSLIYNGLADFGGQQFKQDLTLKMSLEEE
ISTHDREPAEEEVRAVMAICSSCHTEPFQGAIVFSWKDVREHMNNALKGL
SVGPCGNF*

FI04609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22169-PA 522 GF22169-PA 8..522 7..558 2055 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12875-PA 559 GG12875-PA 1..559 1..558 2681 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24535-PA 575 GH24535-PA 18..575 9..558 1983 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
b6-PA 558 CG3100-PA 1..558 1..558 2942 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16499-PA 548 GI16499-PA 17..548 12..558 2064 74.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14269-PA 323 GL14269-PA 1..310 210..529 1053 73.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15926-PA 568 GA15926-PA 4..568 9..558 2195 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19162-PA 554 GM19162-PA 1..554 1..558 2891 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14477-PA 183 GD14477-PA 1..181 1..180 921 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16042-PA 575 GJ16042-PA 29..575 19..558 2118 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25027-PA 564 GK25027-PA 5..564 2..558 2014 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16705-PA 561 GE16705-PA 1..561 1..558 2690 95.9 Plus