BDGP Sequence Production Resources |
Search the DGRC for FI05212
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 52 |
Well: | 12 |
Vector: | pOT2 |
Associated Gene/Transcript | Sodh-1-RA |
Protein status: | FI05212.pep: gold |
Sequenced Size: | 1404 |
Gene | Date | Evidence |
---|---|---|
Sodh-1 | 2008-12-18 | 5.12 accounting |
1404 bp assembled on 2008-09-17
GenBank Submission: BT044539.1
> FI05212.complete GCACATGCAAACAAACACACCTTTTAAACACACATCCAGCTGTACTCAAG TGGTGATAAGGCTGATAACATTTGACCACAAACGATAGTGGGTGTGGTGC CTATTATTTTCCTATCGCTGGTCCTACGTCACGCTGATAACTGATAACCG CGAATTCAGAAGTCCACTAGTGTAAGGTTTAAAATATTTGAATCAGTTGT GAATCGGCTATTCGAGCGTGTGGTTATTAGAGCTCTCAAATAATTCAATT GACACATAGAAATGGCCAAGGATAATCTAACAGCAGTGCTGCACGGCATT GAGGACATGCGATTGGAGCAACGTCCTATTCCAGAGATTGCTGATGATGA GGTTCTCCTGGCCATGGATAGTGTTGGCATTTGCGGCTCTGATGTACACT ACCTTGCACACGGACGCATTGGCGACTTTGTGCTCACTAAGCCCATGATT ATTGGCCACGAGTCCGCCGGCGTGGTGGCTAAGCTGGGCAAGAAGGTGAC CACACTGAAGGTCGGCGACCGCGTGGCCATCGAACCGGGCGTACCCTGCC GTAAGTGCGACCATTGCAAGCAGGGCAAATACAACCTGTGCCCCGGAATG GTCTTCTGTGCCACGCCCCCCTACGACGGCAACCTCACCCGCTACTACAA GCATGCGGCGGACTTCTGCTTCAAGCTGCCCGACCACGTCACCATGGAGG AGGGCGCCCTGCTCGAGCCTCTGTCTGTGGGCGTGCATGCCTGCAAGCGG GCGGAGGTCACCCTGGGCTCAAAAGTTCTCATCCTGGGAGCAGGACCCAT TGGCCTGGTCACTTTAATGGCTGCTCAAGCCATGGGTGCGTCTGAGATCC TCATTACGGATCTTGTGCAGCAACGCCTCGATGTAGCTAAAGAGCTAGGT GCAACTCACACCCTCCTGCTGAAACGGGATCAGACCGCCGAGGAGACGGC GGTGCTCGTCCAAAAAACGATGGGCGGTCAGCCGGACAAGTCCATCGACT GCTGTGGAGCAGAGAGCAGTGCCCGACTGGCCATCTTCGCCACTCGTTCC GGTGGCATTGTGGTGGTGGTGGGCATGGGAGCAGCTGAGATCAAGTTGCC CCTAATTAATGCCCTGGCCCGGGAAGTGGACATCCGCGGCGTCTTCCGCT ACTGCAATGACTATGCCGCTGCCCTGGCCCTTGTCGCCTCCGGAAAGGTG AATGTTAAGCGTCTGGTGACCCACCATTTCGACATCAAGGAAACGGCAAA GGCGTTTGAAACGTCACGAAAGGGACTGGGTGGTGCCATCAAGGTCATGA TCCACGTCCAGCCCAGAGACACCAACAATCCTCGCAAATTCTAAACATTT GTATAAGTCGTTAAAAATATAGTATAGAGAACCCAGTAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sodh-1-RA | 1430 | Sodh-1-RA | 1..1388 | 1..1388 | 6940 | 100 | Plus |
Sodh-2-RA | 1460 | Sodh-2-RA | 189..659 | 274..744 | 1215 | 83.8 | Plus |
Sodh-2.b | 1448 | Sodh-2.b | 218..647 | 315..744 | 1100 | 83.7 | Plus |
Sodh-2-RA | 1460 | Sodh-2-RA | 896..1174 | 981..1259 | 690 | 83.1 | Plus |
Sodh-2.b | 1448 | Sodh-2.b | 884..1162 | 981..1259 | 690 | 83.1 | Plus |
Sodh-2-RA | 1460 | Sodh-2-RA | 678..862 | 763..947 | 355 | 79.4 | Plus |
Sodh-2.b | 1448 | Sodh-2.b | 666..850 | 763..947 | 355 | 79.4 | Plus |
Sodh-2-RA | 1460 | Sodh-2-RA | 1194..1243 | 1279..1328 | 160 | 88 | Plus |
Sodh-2.b | 1448 | Sodh-2.b | 1182..1231 | 1279..1328 | 160 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2879155..2879626 | 349..820 | 2360 | 100 | Plus |
chr3R | 27901430 | chr3R | 2878363..2878678 | 1..316 | 1580 | 100 | Plus |
chr3R | 27901430 | chr3R | 2880342..2880568 | 1161..1387 | 1135 | 100 | Plus |
chr3R | 27901430 | chr3R | 2879889..2880109 | 819..1039 | 1105 | 100 | Plus |
chr3R | 27901430 | chr3R | 6702436..6702899 | 349..812 | 1090 | 82.3 | Plus |
chr3R | 27901430 | chr3R | 2880167..2880288 | 1039..1160 | 610 | 100 | Plus |
chr3R | 27901430 | chr3R | 6702965..6703185 | 819..1039 | 460 | 80.5 | Plus |
chr3R | 27901430 | chr3R | 6703420..6703586 | 1162..1328 | 295 | 78.4 | Plus |
chr3R | 27901430 | chr3R | 6703239..6703360 | 1039..1160 | 235 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7053127..7053598 | 349..820 | 2360 | 100 | Plus |
3R | 32079331 | 3R | 7052335..7052650 | 1..316 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 7054315..7054542 | 1161..1388 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 7053862..7054082 | 819..1039 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 10876899..10877362 | 349..812 | 1090 | 82.3 | Plus |
3R | 32079331 | 3R | 7054140..7054261 | 1039..1160 | 610 | 100 | Plus |
3R | 32079331 | 3R | 10877428..10877648 | 819..1039 | 460 | 80.5 | Plus |
3R | 32079331 | 3R | 10877883..10878049 | 1162..1328 | 295 | 78.4 | Plus |
3R | 32079331 | 3R | 10877702..10877823 | 1039..1160 | 235 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6793958..6794429 | 349..820 | 2360 | 100 | Plus |
3R | 31820162 | 3R | 6793166..6793481 | 1..316 | 1580 | 100 | Plus |
3R | 31820162 | 3R | 6795146..6795373 | 1161..1388 | 1140 | 100 | Plus |
3R | 31820162 | 3R | 6794693..6794913 | 819..1039 | 1105 | 100 | Plus |
3R | 31820162 | 3R | 10617730..10618125 | 349..744 | 1035 | 84 | Plus |
3R | 31820162 | 3R | 6794971..6795092 | 1039..1160 | 610 | 100 | Plus |
3R | 31820162 | 3R | 10618259..10618387 | 819..947 | 270 | 80.6 | Plus |
3R | 31820162 | 3R | 10618421..10618479 | 981..1039 | 265 | 96.6 | Plus |
3R | 31820162 | 3R | 10618533..10618654 | 1039..1160 | 235 | 79.5 | Plus |
3R | 31820162 | 3R | 10618714..10618811 | 1162..1259 | 205 | 80.6 | Plus |
3R | 31820162 | 3R | 6793538..6793572 | 315..349 | 175 | 100 | Plus |
3R | 31820162 | 3R | 10618831..10618880 | 1279..1328 | 160 | 88 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2878363..2878677 | 1..315 | 100 | -> | Plus |
chr3R | 2878736..2878769 | 316..349 | 100 | -> | Plus |
chr3R | 2879156..2879625 | 350..819 | 100 | -> | Plus |
chr3R | 2879890..2880108 | 820..1038 | 100 | -> | Plus |
chr3R | 2880167..2880288 | 1039..1160 | 100 | -> | Plus |
chr3R | 2880342..2880568 | 1161..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1083 | 262..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1083 | 262..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1083 | 262..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1083 | 262..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sodh-1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7053863..7054081 | 820..1038 | 100 | -> | Plus |
3R | 7054140..7054261 | 1039..1160 | 100 | -> | Plus |
3R | 7052335..7052649 | 1..315 | 100 | -> | Plus |
3R | 7052708..7052741 | 316..349 | 100 | -> | Plus |
3R | 7053128..7053597 | 350..819 | 100 | -> | Plus |
3R | 7054315..7054541 | 1161..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7053863..7054081 | 820..1038 | 100 | -> | Plus |
3R | 7054140..7054261 | 1039..1160 | 100 | -> | Plus |
3R | 7052335..7052649 | 1..315 | 100 | -> | Plus |
3R | 7052708..7052741 | 316..349 | 100 | -> | Plus |
3R | 7053128..7053597 | 350..819 | 100 | -> | Plus |
3R | 7054315..7054541 | 1161..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7053863..7054081 | 820..1038 | 100 | -> | Plus |
3R | 7054140..7054261 | 1039..1160 | 100 | -> | Plus |
3R | 7052335..7052649 | 1..315 | 100 | -> | Plus |
3R | 7052708..7052741 | 316..349 | 100 | -> | Plus |
3R | 7053128..7053597 | 350..819 | 100 | -> | Plus |
3R | 7054315..7054541 | 1161..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2878057..2878371 | 1..315 | 100 | -> | Plus |
arm_3R | 2878430..2878463 | 316..349 | 100 | -> | Plus |
arm_3R | 2878850..2879319 | 350..819 | 100 | -> | Plus |
arm_3R | 2879585..2879803 | 820..1038 | 100 | -> | Plus |
arm_3R | 2879862..2879983 | 1039..1160 | 100 | -> | Plus |
arm_3R | 2880037..2880263 | 1161..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6794694..6794912 | 820..1038 | 100 | -> | Plus |
3R | 6794971..6795092 | 1039..1160 | 100 | -> | Plus |
3R | 6795146..6795372 | 1161..1387 | 100 | Plus | |
3R | 6793166..6793480 | 1..315 | 100 | -> | Plus |
3R | 6793539..6793572 | 316..349 | 100 | -> | Plus |
3R | 6793959..6794428 | 350..819 | 100 | -> | Plus |
Translation from 261 to 1343
> FI05212.pep MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAH GRIGDFVLTKPMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCD HCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGAL LEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASEILITD LVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGA ESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCND YAAALALVASGKVNVKRLVTHHFDIKETAKAFETSRKGLGGAIKVMIHVQ PRDTNNPRKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17192-PA | 360 | GF17192-PA | 1..360 | 1..360 | 1709 | 90.3 | Plus |
Dana\GF18841-PA | 360 | GF18841-PA | 1..360 | 1..360 | 1673 | 88.9 | Plus |
Dana\GF17631-PA | 630 | GF17631-PA | 292..612 | 15..343 | 429 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13709-PA | 360 | GG13709-PA | 1..360 | 1..360 | 1854 | 97.8 | Plus |
Dere\GG17814-PA | 360 | GG17814-PA | 1..360 | 1..360 | 1680 | 89.7 | Plus |
Dere\GG23658-PA | 1210 | GG23658-PA | 888..1201 | 24..343 | 423 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14504-PA | 360 | GH14504-PA | 1..360 | 1..360 | 1592 | 84.7 | Plus |
Dgri\GH17060-PA | 301 | GH17060-PA | 1..268 | 62..335 | 368 | 30.2 | Plus |
Dgri\GH23194-PA | 233 | GH23194-PA | 1..232 | 62..299 | 325 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sodh-1-PB | 360 | CG1982-PB | 1..360 | 1..360 | 1853 | 100 | Plus |
Sodh-1-PA | 360 | CG1982-PA | 1..360 | 1..360 | 1853 | 100 | Plus |
Sodh-2-PA | 360 | CG4649-PA | 1..360 | 1..360 | 1688 | 90.3 | Plus |
CG4836-PB | 1214 | CG4836-PB | 892..1205 | 24..343 | 423 | 31.5 | Plus |
CG4836-PC | 1217 | CG4836-PC | 895..1208 | 24..343 | 423 | 31.5 | Plus |
CG4836-PE | 1224 | CG4836-PE | 902..1215 | 24..343 | 423 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22936-PA | 360 | GI22936-PA | 1..360 | 1..360 | 1573 | 84.2 | Plus |
Dmoj\GI22934-PA | 360 | GI22934-PA | 1..360 | 1..360 | 1553 | 83.1 | Plus |
Dmoj\GI22938-PA | 638 | GI22938-PA | 279..638 | 1..360 | 1541 | 81.9 | Plus |
Dmoj\GI22439-PA | 1392 | GI22439-PA | 1053..1360 | 19..336 | 373 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21779-PA | 360 | GL21779-PA | 1..360 | 1..360 | 1628 | 86.9 | Plus |
Dper\GL12569-PA | 360 | GL12569-PA | 1..360 | 1..360 | 1602 | 86.9 | Plus |
Dper\GL12549-PA | 282 | GL12549-PA | 38..282 | 85..360 | 992 | 75 | Plus |
Dper\GL12081-PA | 1304 | GL12081-PA | 971..1299 | 22..360 | 390 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26401-PA | 360 | GA26401-PA | 1..360 | 1..360 | 1626 | 86.9 | Plus |
Dpse\GA27556-PB | 346 | GA27556-PB | 1..346 | 1..360 | 1475 | 81.7 | Plus |
Dpse\GA27556-PA | 329 | GA27556-PA | 1..329 | 1..360 | 1428 | 79.4 | Plus |
Dpse\GA27549-PB | 329 | GA27549-PB | 1..329 | 1..360 | 1315 | 75.3 | Plus |
Dpse\GA26187-PB | 1311 | GA26187-PB | 978..1293 | 22..347 | 376 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10921-PA | 360 | GM10921-PA | 1..360 | 1..360 | 1866 | 98.6 | Plus |
Dsec\GM23911-PA | 360 | GM23911-PA | 1..360 | 1..360 | 1677 | 90 | Plus |
Dsec\GM17688-PA | 1191 | GM17688-PA | 884..1147 | 24..297 | 354 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19902-PA | 360 | GD19902-PA | 1..360 | 1..360 | 1866 | 98.6 | Plus |
Dsim\GD18723-PA | 360 | GD18723-PA | 1..360 | 1..360 | 1669 | 89.7 | Plus |
Dsim\GD19331-PA | 1205 | GD19331-PA | 883..1196 | 24..343 | 412 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15399-PA | 360 | GJ15399-PA | 1..360 | 1..360 | 1573 | 84.2 | Plus |
Dvir\GJ23219-PA | 360 | GJ23219-PA | 1..360 | 1..360 | 1565 | 83.6 | Plus |
Dvir\GJ23218-PA | 360 | GJ23218-PA | 1..360 | 1..360 | 1543 | 83.1 | Plus |
Dvir\GJ11002-PA | 1389 | GJ11002-PA | 1055..1381 | 19..355 | 387 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12254-PA | 360 | GK12254-PA | 1..360 | 1..360 | 1625 | 86.4 | Plus |
Dwil\GK13991-PA | 363 | GK13991-PA | 7..363 | 4..360 | 1618 | 88.2 | Plus |
Dwil\GK22367-PA | 1682 | GK22367-PA | 1353..1650 | 29..336 | 404 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24888-PA | 360 | GE24888-PA | 1..360 | 1..360 | 1837 | 96.9 | Plus |
Dyak\GE26061-PA | 360 | GE26061-PA | 1..360 | 1..360 | 1667 | 89.4 | Plus |
Dyak\GE14970-PA | 216 | GE14970-PA | 1..216 | 145..360 | 1085 | 97.7 | Plus |
Dyak\GE25640-PA | 1215 | GE25640-PA | 893..1206 | 24..343 | 426 | 31.8 | Plus |
Translation from 261 to 1343
> FI05212.hyp MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAH GRIGDFVLTKPMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCD HCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGAL LEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASEILITD LVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGA ESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCND YAAALALVASGKVNVKRLVTHHFDIKETAKAFETSRKGLGGAIKVMIHVQ PRDTNNPRKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sodh-1-PB | 360 | CG1982-PB | 1..360 | 1..360 | 1853 | 100 | Plus |
Sodh-1-PA | 360 | CG1982-PA | 1..360 | 1..360 | 1853 | 100 | Plus |
Sodh-2-PA | 360 | CG4649-PA | 1..360 | 1..360 | 1688 | 90.3 | Plus |
CG4836-PB | 1214 | CG4836-PB | 892..1205 | 24..343 | 423 | 31.5 | Plus |
CG4836-PC | 1217 | CG4836-PC | 895..1208 | 24..343 | 423 | 31.5 | Plus |