Clone FI05230 Report

Search the DGRC for FI05230

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:52
Well:30
Vector:pOT2
Associated Gene/TranscriptCG5003-RA
Protein status:FI05230.pep: gold
Sequenced Size:2497

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5003 2008-12-18 5.12 accounting

Clone Sequence Records

FI05230.complete Sequence

2497 bp assembled on 2008-10-27

GenBank Submission: BT050470.1

> FI05230.complete
CACACTTGACCAATTGCATTTAGCTGGAAAAAAAGCTGCTGGCGAAAATT
GGCAATAAAGTGCAGGAGCAGCCCAAGCATGGAACAGGCCGAATTGGGCA
GTACGTGCCTTGCAGCGCCTAAGCGCCGCTTCCCGGACAACGAACGTTGT
GGGCGGGAGCTGGCCGCCGTGCCCGTGCAGCCAGTGCTGCCACAAATCCC
TACCGAGGAGGAGCCGGAGATAAAACAGCGCAAAAGGGAGAAGGAGCATA
AGGAATCCCTCGACCGGGAAACGGAGTGCAACCTCATGGACTTCTGTGAT
GAGCTGCTCTTCGAGATCTTCCAGTACCTGGACACGTCCTCCATTCTGGC
GGTGATGCATTGCTCGCCGCGCTTTGAAAACCTCCTGCTGGATCACCGCT
TCTATCATCACATAGACTTAAGCAACGGGCCCCTGCCTATGGGCATCCTA
GAAGAGATTCTTGGACGAGCCACCGAAAAGACACACACCATTAAAATCTG
CGGACCTCCGTCCTCGCAGCATGTTGCAGGCGAATTCCGCCAGTTCACCC
AAACGCTAAGCTCCGTTTTCCCCAGGGTTGTACAGCTTAAAGTGCTGGAG
CTGGAGGGCGTCAGCCTGGACTTCGAATACATACACATAACTGAGTTCCC
GGCCACTCTGAGGCGTCTGAAGCTAAAGGACTGTAGCGTTAGGGTCGGCG
ACACGCCAAAAAGCATATTTTACTCCATAGAGCTGCATCTGCTTGATCTA
GAGGATCTCAGTATTGAGGACAACAGCTGGTTCGAGCCCTATTATATTAT
GGGCCTGTCGAAGTTACCTTCCTTGCGGCGTCTTAGTCTTAAGGGCTGTC
AGGCGCTATGCAAGTTTGTGCCCTATGGCAGCATGGCGGCACGTTTCGGT
TTCCAAAAACTAGAGTCACTAGATCTTCGCCAGACGCCCATCAACAACTC
AGATCTGCAGTGTTTTAGCGCTATCGAGAATCTCAAGGAACTGCTGCTTG
AGTCGCCACAGATCCTGCACTCCAAACAAGCCGTTGCTAAAAAAAATACC
AACGGCAACGCCACTGACGAAGCTGCTTCCCCGCAGCCTGATTCACTGAA
AGTGCTTAGCGATGACGAGCCGTCCACATCGCGGGCCGCCATGGAGCATC
TGCGTGCATGCAAGGTTGCGTTCAATTTGGACAACTGCAGCGATAGAAAG
GAGGAGAAGTCGCCGGTGCCAACTGAGCCTCCTTCGGAGGGTCAGGATCT
TCAGGCGAAACGAATACGAGCACCATCAGAATCCGATGATGAGGACACAT
CATCCACCTCAGGGTCTTCGTCGGACAAATTGGAGGTTTTATCGTTGCCC
AGAAATGGTCATAGCAACGCTGCACCTTTGAGCGGAGGCGTCGACTTGCC
GCCACTTCCGCATGCAGCCGATGCAGCCAATGCAGCCGATGCACCAATTG
CAGTTGATGCAGCCAATATCGAGGCTCCCGGGCAGAGTCCCGGCTTGGAT
CCTAGACCCCCGCGCGCTTACATCTACGTGCCCGACGCTGAGAACGCTAA
CCCGCGCCAACAGCGTAGTGTTGTGGCCGTATTTGCGCAGGGAACGGAGC
AACGGTATATCTATGTCAATCAACAATTCTCACTCCCGATGAATGTTCTG
ATGCCGACGCGACGCCATCGTACGCATCCGCGTCCGAACTACGATCAGGT
TGTTCAGCATCCGATGTTTTGGAACATGCTCGAGCCACTGGATCGCGACT
ATGCTCGACGAGTGCGCCCACGTCCGCCTTCCTGTCAGACAACACCTCAA
TACTATGTCACCGATCGGGCGATGTATAGCTTTGGCCGAGCTGATCGACC
GGTGCAACCGGACGTTGTCTGGATCCGGAACATCAATCGCTCGCCAGACA
ATAAACTGGAGCGACTGTCGTTGCGAAACTACCATCTCATCACAAATCAT
ACCCTGGAGCACCTGGTGCAGTGCTCTCCGAATCTGGTGTATATCGATGT
TAGTGGCACCAGCATTACGCTTCCGGCAATTCGGCGCTTCAAGATCTCCA
AACCGAAATGCGAAGTGGTCGCCAATCACTTGGAGGAGTTTGAAAGACTT
CCGGAGCTGGAGACACAGGAAGAGGATGACACGGTGGTGGTGATGCTGCA
GCCACCGCCGCGCGCCGACGACGAGCAGCCACCGAAATCGCCACCGCCAC
AGGAGGTGGTGGCTCCTTAGAATATTGTTTGTAAAGATTCCGTCGAAGTG
GGCCGTGCTGGATTATTTTATTTTTTTTTAAGAAAAAAGACGACATGGCC
AAGCCGATGGATCCACAACGCTGGCTACAAGCGAGTGCTGTAGCTCAGCC
ATCTAGTATTACGTTTGACTATTCGAGTCCTTGTAATATATACACGCCAG
GCTAAACGCACTGTATAAATCAAAACCACAATTCAATTCCTTTAGCTAGG
CATTAAAAAGAGCGCGCGAGATCCTTTTGGTAAAAAAAAAAAAAAAA

FI05230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5003-RA 2605 CG5003-RA 117..2600 1..2484 12420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23736738..23738305 2481..914 7720 99.5 Minus
chr3R 27901430 chr3R 23739109..23739467 359..1 1795 100 Minus
chr3R 27901430 chr3R 23738753..23739023 630..360 1355 100 Minus
chr3R 27901430 chr3R 23738357..23738520 915..752 805 99.4 Minus
chr3R 27901430 chr3R 23738571..23738694 754..631 590 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:14:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27913774..27915344 2484..914 7855 100 Minus
3R 32079331 3R 27916148..27916506 359..1 1795 100 Minus
3R 32079331 3R 27915792..27916062 630..360 1355 100 Minus
3R 32079331 3R 27915396..27915559 915..752 820 100 Minus
3R 32079331 3R 27915610..27915733 754..631 620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27654605..27656175 2484..914 7855 100 Minus
3R 31820162 3R 27656979..27657337 359..1 1795 100 Minus
3R 31820162 3R 27656623..27656893 630..360 1355 100 Minus
3R 31820162 3R 27656227..27656390 915..752 820 100 Minus
3R 31820162 3R 27656441..27656564 754..631 620 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:14:25 has no hits.

FI05230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:31 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23736738..23738303 916..2481 97 <- Minus
chr3R 23738357..23738518 754..915 99 <- Minus
chr3R 23738572..23738694 631..753 98 <- Minus
chr3R 23738753..23739023 360..630 100 <- Minus
chr3R 23739109..23739467 1..359 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:49:45 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 1..2142 79..2220 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:48 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 1..2142 79..2220 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:12 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 1..2142 79..2220 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:44 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 1..2142 79..2220 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:57:12 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 22..2502 1..2481 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:48 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 22..2502 1..2481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:12 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 22..2502 1..2481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-27 13:48:30 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 22..2502 1..2481 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:44 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
CG5003-RA 11..2491 1..2481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:31 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27913777..27915342 916..2481 100 <- Minus
3R 27915396..27915557 754..915 100 <- Minus
3R 27915611..27915733 631..753 100 <- Minus
3R 27915792..27916062 360..630 100 <- Minus
3R 27916148..27916506 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:31 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27913777..27915342 916..2481 100 <- Minus
3R 27915396..27915557 754..915 100 <- Minus
3R 27915611..27915733 631..753 100 <- Minus
3R 27915792..27916062 360..630 100 <- Minus
3R 27916148..27916506 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:31 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27913777..27915342 916..2481 100 <- Minus
3R 27915396..27915557 754..915 100 <- Minus
3R 27915611..27915733 631..753 100 <- Minus
3R 27915792..27916062 360..630 100 <- Minus
3R 27916148..27916506 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:12 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23739499..23741064 916..2481 100 <- Minus
arm_3R 23741118..23741279 754..915 100 <- Minus
arm_3R 23741333..23741455 631..753 100 <- Minus
arm_3R 23741514..23741784 360..630 100 <- Minus
arm_3R 23741870..23742228 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:48 Download gff for FI05230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27654608..27656173 916..2481 100 <- Minus
3R 27656227..27656388 754..915 100 <- Minus
3R 27656442..27656564 631..753 100 <- Minus
3R 27656623..27656893 360..630 100 <- Minus
3R 27656979..27657337 1..359 100   Minus

FI05230.pep Sequence

Translation from 78 to 2219

> FI05230.pep
MEQAELGSTCLAAPKRRFPDNERCGRELAAVPVQPVLPQIPTEEEPEIKQ
RKREKEHKESLDRETECNLMDFCDELLFEIFQYLDTSSILAVMHCSPRFE
NLLLDHRFYHHIDLSNGPLPMGILEEILGRATEKTHTIKICGPPSSQHVA
GEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRRLKLK
DCSVRVGDTPKSIFYSIELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLR
RLSLKGCQALCKFVPYGSMAARFGFQKLESLDLRQTPINNSDLQCFSAIE
NLKELLLESPQILHSKQAVAKKNTNGNATDEAASPQPDSLKVLSDDEPST
SRAAMEHLRACKVAFNLDNCSDRKEEKSPVPTEPPSEGQDLQAKRIRAPS
ESDDEDTSSTSGSSSDKLEVLSLPRNGHSNAAPLSGGVDLPPLPHAADAA
NAADAPIAVDAANIEAPGQSPGLDPRPPRAYIYVPDAENANPRQQRSVVA
VFAQGTEQRYIYVNQQFSLPMNVLMPTRRHRTHPRPNYDQVVQHPMFWNM
LEPLDRDYARRVRPRPPSCQTTPQYYVTDRAMYSFGRADRPVQPDVVWIR
NINRSPDNKLERLSLRNYHLITNHTLEHLVQCSPNLVYIDVSGTSITLPA
IRRFKISKPKCEVVANHLEEFERLPELETQEEDDTVVVMLQPPPRADDEQ
PPKSPPPQEVVAP*

FI05230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18683-PA 718 GF18683-PA 1..702 1..698 2077 62.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12087-PA 731 GG12087-PA 1..731 1..713 2758 75.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16906-PA 770 GH16906-PA 8..730 10..668 1702 52.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5003-PA 713 CG5003-PA 1..713 1..713 3744 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10732-PA 796 GI10732-PA 9..726 11..668 1706 54.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13759-PA 746 GL13759-PA 1..696 1..669 1908 58.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18586-PB 709 GA18586-PB 1..659 1..669 1921 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16316-PA 699 GM16316-PA 1..699 1..713 3212 89.5 Plus
Dsec\GM11701-PA 164 GM11701-PA 1..164 550..713 817 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18053-PA 285 GD18053-PA 1..185 1..185 888 89.2 Plus
Dsim\GD18053-PA 285 GD18053-PA 166..285 590..713 382 66.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10675-PA 754 GJ10675-PA 28..697 40..668 1880 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11314-PA 762 GK11314-PA 1..737 1..681 1705 51.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10534-PA 737 GE10534-PA 1..737 1..713 2709 74.3 Plus

FI05230.hyp Sequence

Translation from 78 to 2219

> FI05230.hyp
MEQAELGSTCLAAPKRRFPDNERCGRELAAVPVQPVLPQIPTEEEPEIKQ
RKREKEHKESLDRETECNLMDFCDELLFEIFQYLDTSSILAVMHCSPRFE
NLLLDHRFYHHIDLSNGPLPMGILEEILGRATEKTHTIKICGPPSSQHVA
GEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRRLKLK
DCSVRVGDTPKSIFYSIELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLR
RLSLKGCQALCKFVPYGSMAARFGFQKLESLDLRQTPINNSDLQCFSAIE
NLKELLLESPQILHSKQAVAKKNTNGNATDEAASPQPDSLKVLSDDEPST
SRAAMEHLRACKVAFNLDNCSDRKEEKSPVPTEPPSEGQDLQAKRIRAPS
ESDDEDTSSTSGSSSDKLEVLSLPRNGHSNAAPLSGGVDLPPLPHAADAA
NAADAPIAVDAANIEAPGQSPGLDPRPPRAYIYVPDAENANPRQQRSVVA
VFAQGTEQRYIYVNQQFSLPMNVLMPTRRHRTHPRPNYDQVVQHPMFWNM
LEPLDRDYARRVRPRPPSCQTTPQYYVTDRAMYSFGRADRPVQPDVVWIR
NINRSPDNKLERLSLRNYHLITNHTLEHLVQCSPNLVYIDVSGTSITLPA
IRRFKISKPKCEVVANHLEEFERLPELETQEEDDTVVVMLQPPPRADDEQ
PPKSPPPQEVVAP*

FI05230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5003-PA 713 CG5003-PA 1..713 1..713 3744 100 Plus