Clone FI05303 Report

Search the DGRC for FI05303

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:53
Well:3
Vector:pOT2
Associated Gene/TranscriptPal1-RA
Protein status:FI05303.pep: gold
Sequenced Size:2641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12130 2008-12-18 5.12 accounting

Clone Sequence Records

FI05303.complete Sequence

2641 bp assembled on 2008-11-04

GenBank Submission: BT050472.1

> FI05303.complete
CCTGCCGGGTTTCTTGGCGGCGTTTATCCATTACCGTCAGTTCCTGCTTG
TTGACCAGAATTTTGTCGGCCAACTCCTCGGTCTTGATTTGCTAAAAACA
CGGAAGTAAACAAAAGTGAAGAAGTGAGACCCGAAAACGTACTAACGCCT
CTTAAACAGCTGTTCGATCAGGGGCGCATCATAGAAGAGGGATTCATTTT
ACATGCTAACTGTATGAGGAAACATTTAACTGTTAACCTGTTAATATTCT
TCCTATTAGCGCTTGTAACCAAATATGGTTACATTATAGCACAGCATAAC
TGCATAACATTGAGCCCCTGTAAACACACATTCTACCTGCGCCGCTGAAC
AAATAACATCTCAATCGCAAGCAAAGATGGCCGCGTCATAAGTTGATTTG
TAGTTCCAAAACGAGACGAGACGTTTGTTTACGAGCACAACTACGCCGGA
CTGGATCTCCGCCAGCATTCGGGCAGCTATATATATACATTCGAAGGGAC
ACCAAAGCAATGAAATCCACCGACAGCGCCAAGTGCCTGGGCAGCAAGTC
CTTGGCAATCTGTTGCCTGCTCCTCCACCTCCTACTCTGCATTAGACCAG
CAGTGTCGCAGACTCAAAGTCCACAGCGTTATCTGCATAATGTGGACAGC
AATAGCAACAACAACGAACGCCTGCACCAGATACTCAAGGGATCCGGAGC
AGGATCGGGAGCCACGCAGCTCAACTGGCCACAGCCTCCGAAGCAAACTG
TCCCCAACGTCAAGACTGAGCTGGCCAAGCTAAACAACACTTACGTTTAC
CAGAACGCCTGGCCGGCAAACAATGTGAAACTGGGTGCAGTGACAGCTGT
AAGTTTCGACAAGGCCGGCAACGTGGTAATCTTCCATCGCGTGAATCGCG
TCTGGGGACAGACCACATTTGATAACAGGAACCAGTACCAGGAGAAGTAC
CGCGGGCCCATCAGGGAGAGCACCATCCTGGCACTGGAGCCCGCAACAGG
CAAAGTGCAATACGACTGGGGCAAGAACTTTTTTTACATGCCACATGGCC
TGACCGTGGACCCCGAAGACAACGTTTGGTTAACAGACGTCGCCATGCAC
CAGGTTTTTAAGTTCCCGCCCCGTGGAGGCGATGGAAAACCAGCGTTGAC
TCTGGGCGATGCCTTCCAGCCCGGTTCAGGACGCAAATTCTGCAAGCCCA
CCTCGGTGGCGGTGTTGGATAATGGGGACTTCTTCGTGGCGGATGGATAC
TGCAATGCTCGCATCCTTAAGTACTCACGAAAAGGCGAATTGATCCTCTT
CTGGGGACAGAACACCTTCTCCGGCATATCCTACGACGTTGCGCCCCAGA
ACTTCTTCGCGATTCCCCACGCTCTGACTCTCGTCCCGGAGTTGCAGTTA
CTCTGCGCAGCTGATAGGGAGAATGGGCGCGTACAGTGCTTCCTCTCGAG
CAACGGCACCTTTCACTCACAGTACCACAACCAGCTGATAGGGGACCGCC
TCTTCAGCATGGCTTACACCCCGGCAGCGGGTGGGCAGCTGGTCATTGTC
AACGGACCAACCGCCGAGTTAGGCATCCATCCTGAGCATTATAACGAGGT
GCACGGTTTCGTGCTAAGCATGCGCAGCAAGCAACTGGTGTCTAAGTTCG
GCCCCAATAACCTGCAGTTCCAGAACCCGCACGACGTGGCCGTTACAGCC
GACGGCAATGAGATCTACGTGGCCGAGCTGAATCCAATGCGTATCCACAA
GTTCGTCCACCGATCTCTGGCCAAGCCAATGTCCTTGTCGGCCAGCAAGG
ACTCTAGGGACAGCGCTATTAGCCAAGCTGTGGGAGGGGACCAGGTTCCC
GCAGTGGCTGTGCACCACCCGAGCGGCAAAGCAATCCTGGTGGCTTCGCT
CATGCTCCTTTTCGCCGGCTCTACCTTTGCCTTGGCTTTGATCTTTGCGC
GGCGGAGGAAACGAGGTTGCCTGCCTTTCGGAGCACGCGGTCGTCGCCAC
GCGTGGGAGAAAAGCGATGGCTTCAAGCTGGGCGGACTTCTCGATCGGGA
TCGCAACGGATTCGAGAAGCTGGACCAGCAGGCCAGCGACGAGGAGCAGG
AGACGAAGACACTGGCGAGTGCCCAGTACGCCTAGGCGAAGGACCAAGAC
TTACGCAGCTAACAAAGCATTCCTAGTTCTAACTACCTGTACCTCATTGA
AATACCGACTTAGTTTTACGCGAGCTATGTATATGTGTGTACTTTAGGTA
ACTTTATTTACCTTCCTTGTGGTGCATATCGCAGAGAATTCCGATCGTGG
TGTATTTCTAGTTGATTTATTGAGCCGTTTGTTCAATGTATTTTAAACAG
CTTATTTATGGAAACTTCTTTTGGAGAACCGACTATGCGATTTTTTTCCG
GTTACTTATATTTATTCTTTATTTAAAAGAATACATTTTTAAAACGCATG
CCTCTAAAGAGCTCGAAAATATCTGAAATATTGTAAGTGCCACAGAGTCC
AATGACTTGACCACATCCTTTAAATTAATTTTTTTTTTCGAATTAAATCG
AAGTTCTCAGCGAATGCGCCTCATATATTGCGATTAATTTGCCAAAAAGA
ATATAGTCGTATGAATCTGTCAAAAAAAAAAAAAAAAAAAA

FI05303.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12130-RA 2621 CG12130-RA 1..2621 1..2621 13105 100 Plus
CG12130-RB 2690 CG12130-RB 1..1967 1..1967 9835 100 Plus
CG12130-RB 2690 CG12130-RB 2035..2690 1966..2621 3280 100 Plus
CG15863-RA 785 CG15863-RA 1..187 981..795 935 100 Minus
CG15863-RA 785 CG15863-RA 260..345 86..1 430 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5850693..5851352 1964..2621 3220 99.5 Plus
chr2R 21145070 chr2R 5849060..5849562 1031..1533 2515 100 Plus
chr2R 21145070 chr2R 5849722..5850159 1530..1967 2160 99.5 Plus
chr2R 21145070 chr2R 5847477..5847830 258..611 1755 99.7 Plus
chr2R 21145070 chr2R 5848292..5848532 790..1030 1205 100 Plus
chr2R 21145070 chr2R 5848052..5848232 609..789 890 99.4 Plus
chr2R 21145070 chr2R 5847229..5847400 86..257 860 100 Plus
chr2R 21145070 chr2R 5847077..5847162 1..86 415 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:14:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9963196..9963854 1964..2622 3295 100 Plus
2R 25286936 2R 9961563..9962065 1031..1533 2515 100 Plus
2R 25286936 2R 9962225..9962662 1530..1967 2190 100 Plus
2R 25286936 2R 9959949..9960302 258..611 1770 100 Plus
2R 25286936 2R 9960763..9961003 790..1030 1205 100 Plus
2R 25286936 2R 9960523..9960703 609..789 905 100 Plus
2R 25286936 2R 9959701..9959872 86..257 860 100 Plus
2R 25286936 2R 9959549..9959634 1..86 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9964395..9965053 1964..2622 3295 100 Plus
2R 25260384 2R 9962762..9963264 1031..1533 2515 100 Plus
2R 25260384 2R 9963424..9963861 1530..1967 2190 100 Plus
2R 25260384 2R 9961148..9961501 258..611 1770 100 Plus
2R 25260384 2R 9961962..9962202 790..1030 1205 100 Plus
2R 25260384 2R 9961722..9961902 609..789 905 100 Plus
2R 25260384 2R 9960900..9961071 86..257 860 100 Plus
2R 25260384 2R 9960748..9960833 1..86 430 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:45:56 has no hits.

FI05303.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:46:57 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5848292..5848532 790..1030 100 -> Plus
chr2R 5847077..5847162 1..86 98 -> Plus
chr2R 5847230..5847400 87..257 100 -> Plus
chr2R 5847477..5847830 258..611 99 -> Plus
chr2R 5848055..5848232 612..789 99 -> Plus
chr2R 5849060..5849559 1031..1530 100 -> Plus
chr2R 5849723..5850157 1531..1965 99 -> Plus
chr2R 5850695..5851352 1966..2621 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:18:05 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
CG12130-RA 1..1626 510..2135 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:17 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
Pal1-RD 1..1626 510..2135 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:08 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
Pal1-RD 1..1626 510..2135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:58:19 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
CG12130-RA 1..2621 1..2621 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:18:04 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
CG12130-RA 1..2621 1..2621 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:17 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
Pal1-RA 1..2621 1..2621 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 12:52:42 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
CG12130-RA 1..2621 1..2621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:08 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
Pal1-RA 1..2621 1..2621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:57 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9960763..9961003 790..1030 100 -> Plus
2R 9959549..9959634 1..86 100 -> Plus
2R 9959702..9959872 87..257 100 -> Plus
2R 9959949..9960302 258..611 100 -> Plus
2R 9960526..9960703 612..789 100 -> Plus
2R 9961563..9962062 1031..1530 100 -> Plus
2R 9962226..9962660 1531..1965 100 -> Plus
2R 9963198..9963853 1966..2621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:57 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9960763..9961003 790..1030 100 -> Plus
2R 9959549..9959634 1..86 100 -> Plus
2R 9959702..9959872 87..257 100 -> Plus
2R 9959949..9960302 258..611 100 -> Plus
2R 9960526..9960703 612..789 100 -> Plus
2R 9961563..9962062 1031..1530 100 -> Plus
2R 9962226..9962660 1531..1965 100 -> Plus
2R 9963198..9963853 1966..2621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:57 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9960763..9961003 790..1030 100 -> Plus
2R 9959549..9959634 1..86 100 -> Plus
2R 9959702..9959872 87..257 100 -> Plus
2R 9959949..9960302 258..611 100 -> Plus
2R 9960526..9960703 612..789 100 -> Plus
2R 9961563..9962062 1031..1530 100 -> Plus
2R 9962226..9962660 1531..1965 100 -> Plus
2R 9963198..9963853 1966..2621 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:17 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5847054..5847139 1..86 100 -> Plus
arm_2R 5847207..5847377 87..257 100 -> Plus
arm_2R 5847454..5847807 258..611 100 -> Plus
arm_2R 5848031..5848208 612..789 100 -> Plus
arm_2R 5848268..5848508 790..1030 100 -> Plus
arm_2R 5849068..5849567 1031..1530 100 -> Plus
arm_2R 5849731..5850165 1531..1965 100 -> Plus
arm_2R 5850703..5851358 1966..2621 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:49:16 Download gff for FI05303.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9961148..9961501 258..611 100 -> Plus
2R 9961725..9961902 612..789 100 -> Plus
2R 9961962..9962202 790..1030 100 -> Plus
2R 9962762..9963261 1031..1530 100 -> Plus
2R 9963425..9963859 1531..1965 100 -> Plus
2R 9964397..9965052 1966..2621 100   Plus
2R 9960748..9960833 1..86 100 -> Plus
2R 9960901..9961071 87..257 100 -> Plus

FI05303.pep Sequence

Translation from 509 to 2134

> FI05303.pep
MKSTDSAKCLGSKSLAICCLLLHLLLCIRPAVSQTQSPQRYLHNVDSNSN
NNERLHQILKGSGAGSGATQLNWPQPPKQTVPNVKTELAKLNNTYVYQNA
WPANNVKLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQEKYRGP
IRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVF
KFPPRGGDGKPALTLGDAFQPGSGRKFCKPTSVAVLDNGDFFVADGYCNA
RILKYSRKGELILFWGQNTFSGISYDVAPQNFFAIPHALTLVPELQLLCA
ADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSMAYTPAAGGQLVIVNGP
TAELGIHPEHYNEVHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVTADGN
EIYVAELNPMRIHKFVHRSLAKPMSLSASKDSRDSAISQAVGGDQVPAVA
VHHPSGKAILVASLMLLFAGSTFALALIFARRRKRGCLPFGARGRRHAWE
KSDGFKLGGLLDRDRNGFEKLDQQASDEEQETKTLASAQYA*

FI05303.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13565-PA 539 GF13565-PA 31..539 29..541 2299 82.7 Plus
Dana\GF13074-PA 413 GF13074-PA 95..398 83..407 613 41.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24122-PA 541 GG24122-PA 1..541 1..541 2643 91.7 Plus
Dere\GG22877-PA 407 GG22877-PA 4..392 15..407 631 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21446-PA 538 GH21446-PA 20..538 15..541 2074 74.1 Plus
Dgri\GH20345-PA 389 GH20345-PA 88..373 101..406 609 42.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pal1-PD 541 CG12130-PD 1..541 1..541 2862 100 Plus
Pal1-PA 541 CG12130-PA 1..541 1..541 2862 100 Plus
Pal1-PC 511 CG12130-PC 1..486 1..486 2570 100 Plus
Pal2-PE 406 CG5472-PE 63..391 74..407 606 39.7 Plus
Pal2-PD 406 CG5472-PD 63..391 74..407 606 39.7 Plus
Pal2-PA 406 CG5472-PA 63..391 74..407 606 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20251-PA 552 GI20251-PA 26..552 21..541 2074 73 Plus
Dmoj\GI20014-PA 388 GI20014-PA 87..372 101..406 608 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16764-PA 543 GL16764-PA 28..535 23..532 2232 79.6 Plus
Dper\GL16880-PA 370 GL16880-PA 31..355 75..407 617 41.4 Plus
Dper\GL11758-PA 461 GL11758-PA 363..459 265..354 235 54.5 Plus
Dper\GL11758-PA 461 GL11758-PA 321..384 53..153 213 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11425-PA 538 GA11425-PA 1..530 1..532 2254 78.1 Plus
Dpse\GA18906-PA 391 GA18906-PA 73..376 83..407 617 42.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21169-PA 541 GM21169-PA 1..541 1..541 2875 98 Plus
Dsec\GM16037-PA 406 GM16037-PA 4..391 15..407 620 37.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10702-PA 526 GD10702-PA 1..526 1..541 2758 95 Plus
Dsim\GD11785-PA 406 GD11785-PA 4..391 15..407 618 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20204-PA 543 GJ20204-PA 12..543 9..541 2054 72.4 Plus
Dvir\GJ21262-PA 388 GJ21262-PA 87..372 101..406 610 42.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15744-PA 550 GK15744-PA 7..550 15..541 2024 71.1 Plus
Dwil\GK23070-PA 398 GK23070-PA 80..383 83..407 608 41.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19318-PA 541 GE19318-PA 1..541 1..541 2592 91.9 Plus
Dyak\GE14315-PA 403 GE14315-PA 4..388 15..407 612 37.3 Plus

FI05303.hyp Sequence

Translation from 509 to 2134

> FI05303.hyp
MKSTDSAKCLGSKSLAICCLLLHLLLCIRPAVSQTQSPQRYLHNVDSNSN
NNERLHQILKGSGAGSGATQLNWPQPPKQTVPNVKTELAKLNNTYVYQNA
WPANNVKLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQEKYRGP
IRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVF
KFPPRGGDGKPALTLGDAFQPGSGRKFCKPTSVAVLDNGDFFVADGYCNA
RILKYSRKGELILFWGQNTFSGISYDVAPQNFFAIPHALTLVPELQLLCA
ADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSMAYTPAAGGQLVIVNGP
TAELGIHPEHYNEVHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVTADGN
EIYVAELNPMRIHKFVHRSLAKPMSLSASKDSRDSAISQAVGGDQVPAVA
VHHPSGKAILVASLMLLFAGSTFALALIFARRRKRGCLPFGARGRRHAWE
KSDGFKLGGLLDRDRNGFEKLDQQASDEEQETKTLASAQYA*

FI05303.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pal1-PA 541 CG12130-PA 1..541 1..541 2862 100 Plus
Pal1-PD 541 CG12130-PD 1..541 1..541 2862 100 Plus
Pal1-PC 511 CG12130-PC 1..486 1..486 2570 100 Plus
Pal2-PE 406 CG5472-PE 63..391 74..407 606 39.7 Plus
Pal2-PD 406 CG5472-PD 63..391 74..407 606 39.7 Plus