Clone FI06002 Report

Search the DGRC for FI06002

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:60
Well:2
Vector:pOTB7
Associated Gene/TranscriptRcd7-RA
Protein status:FI06002.pep: gold
Sequenced Size:1865

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14098 2008-08-15 Release 5.9 accounting
CG14098 2008-12-18 5.12 accounting

Clone Sequence Records

FI06002.complete Sequence

1865 bp assembled on 2008-08-11

GenBank Submission: BT044243.1

> FI06002.complete
CCAAAGTTTTTTTATTCAACGGAAATTTAAATATATAGCGAAAGCACACT
TATATCCCTTCTAGCAGAGATATGGTGCCTCTTGAGATATTTCGCGTTAT
TGTCATTATCATACTACTGATTAGCATCACCGTGGTTTTTTCCCTTCGGC
TAAGCACCCCAGAGCAAGAATAAAGACTTGAAAGGACACATCCGCTTACC
TGCATATTCTCGTGCTTCTCCTTGCGATTGGCGATCGCTTTGAGCTCCTC
GCTGCAAATCAAAGAACTCACGTAGTTTGTGGTCAGGTTGTCTATGAAGT
TCTTCTGCCTGGACTGAGTGGCGTTCCACCACCTGCGCACCACAGCAGGC
AGCTTGCGGAGCACCTCCGTGTACAAGTGGCAGGCATATCGCTCCAGGGG
TAGATGTCGATCTGCAAAATGGATCAAGAAATGTAACAAGCATGGAAAAC
CCAATAAACTTCAAGGATATACCCTCCGAGATGCCGCAGCCAAAGCGCAT
TCAACTTGAGGGCGAGACTTCGGTGGCCGAAGCCATAAACTTCCTGAAGA
CGCAATGCGATACGCGCAAGGAGCACAAGCCTGAGGAGTTTCAGCAGGAT
GGACCAACCGTAGCGGACGAGTTAAACGCTCGCCTGGCCATGGTTCATGT
GCGCGAGACTCGTGCCAAACGCATTCGCCGCTTAGTTAAGTTTTCCCCCA
ATGAGACGCAAGCATTGTACAGGTTCATCTGTGTCTGTCCCCGCTACCAT
CCTTGCTATGTGCCCTGCCAACACACGGGACAAATAATCATCGACCGGGA
CGTGTTGTCCCGCGAGGAACACATATGTTTTCTAGCTACACCCAAGAAGG
ACTTCTCCTCACCCCAGTTGGCCAAACAGGCGCGCTACTACACCAAAAAG
ATCTACGTTAACCAATGTACAGCACGGGTTGAACGACTTGCCGATCCTCA
CCCAATGCGAGTGAGTGACACATACAATTTCTTTAAGGACTACCTCTCGC
CTCGTCATATAGCGGCTCTAGAGAACCAGATGAAACCCAAACCTCCGGTA
GAAGCCATGTCAATGGAGAAGGCGCTGGAATACATGGAGGAGGAGATGCG
TCAGCGCAAGGCAGCGAAGCGTGTCCAAAAGCGACGATGCAAGGGTCTAA
AAAAACGAATCATTTTGCGCCAGCGCAAGCAGATGCAAAAGATAATTTGC
GTACTGTTCGAGGAAATGAAGGACTTTCTACTCAACGATCAGTTTATTGT
TGACGAGAACTCCCCTCTATGTTGCGTAATTCTTGAGAGACTTCGAGAAT
TTACAGATCAAGAATTCTATACGACAAGTAATTTGCAAGAGTATCAGAGG
ATATTGGCCAACAACCTAACCGTTTGGGTCAACAAGTTCATATCAAACTT
AAACATTTACTTGACACCTCAGCAAATACCTGTAAAACGACAGATGATGG
CAGAGAACGATCCCGAACAGTTTGTGCCCTTGTCAGATTTCATTTCTGTA
TCCGATGAGGCGGATGCAGAGGAAATGATGAACGATGTCGAGCACGGAGC
CGCTGAATATGACGACTATGGATATGGGGAGGACTACTTGCCCGACGTTC
TCAATACGGATATATCGGAGGAAACAATAATCTAAGTAATGTTCAGCTTA
CCCTTCTGCTGAGACCAGGTCAGCTCTTTGTAAACGCCGTTGCTGTGGAC
CTTGGCACCGTGGTTCTTAAGTATGTCCACGGGCATTGCGCGGAAAAGGA
AGTGAAGGAAATTCTGTGGAGCAAAGAAATTGAAAGTGTAAATTTAAAAT
TATTAGTAAATTTAATGTATCGTTTCCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

FI06002.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd7-RA 1827 Rcd7-RA 1..1827 1..1827 9105 99.8 Plus
Rcd7.a 1755 Rcd7.a 1..1755 77..1827 8660 99.6 Plus
Rcd7-RB 1480 Rcd7-RB 91..1480 438..1827 6950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19535504..19536089 721..1306 2930 100 Plus
chr3L 24539361 chr3L 19536144..19536666 1305..1827 2615 100 Plus
chr3L 24539361 chr3L 19534483..19534922 1..440 2170 99.5 Plus
chr3L 24539361 chr3L 19535053..19535339 438..724 1435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:15:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19546131..19546716 721..1306 2930 100 Plus
3L 28110227 3L 19546771..19547295 1305..1829 2625 100 Plus
3L 28110227 3L 19545110..19545549 1..440 2170 99.5 Plus
3L 28110227 3L 19545680..19545966 438..724 1435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19539231..19539816 721..1306 2930 100 Plus
3L 28103327 3L 19539871..19540395 1305..1829 2625 100 Plus
3L 28103327 3L 19538210..19538649 1..440 2170 99.5 Plus
3L 28103327 3L 19538780..19539066 438..724 1435 100 Plus
Blast to na_te.dros performed 2019-03-16 01:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 2429..2492 413..474 117 67.2 Plus

FI06002.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:32:58 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19534483..19534922 1..440 99 -> Plus
chr3L 19535056..19535337 441..722 100 -> Plus
chr3L 19535506..19536089 723..1306 100 -> Plus
chr3L 19536146..19536624 1307..1785 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:51:40 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
CG14098-RB 1..1194 442..1635 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:10:02 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RB 1..1194 442..1635 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:28 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RA 1..1194 442..1635 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:21 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
CG14098-RA 1..1194 442..1635 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:35:42 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RA 1..1194 442..1635 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:49:28 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
CG14098-RA 1..1826 1..1826 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:10:02 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RA 1..1827 1..1827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:28 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RA 1..1827 1..1827 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:23 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
CG14098-RA 1..1826 1..1826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:35:42 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd7-RA 1..1827 1..1827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:58 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19545110..19545549 1..440 99 -> Plus
3L 19545683..19545964 441..722 100 -> Plus
3L 19546133..19546716 723..1306 100 -> Plus
3L 19546773..19547293 1307..1827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:58 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19545110..19545549 1..440 99 -> Plus
3L 19545683..19545964 441..722 100 -> Plus
3L 19546133..19546716 723..1306 100 -> Plus
3L 19546773..19547293 1307..1827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:58 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19545110..19545549 1..440 99 -> Plus
3L 19545683..19545964 441..722 100 -> Plus
3L 19546133..19546716 723..1306 100 -> Plus
3L 19546773..19547293 1307..1827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:28 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19538210..19538649 1..440 99 -> Plus
arm_3L 19538783..19539064 441..722 100 -> Plus
arm_3L 19539233..19539816 723..1306 100 -> Plus
arm_3L 19539873..19540393 1307..1827 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:59 Download gff for FI06002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19538210..19538649 1..440 99 -> Plus
3L 19538783..19539064 441..722 100 -> Plus
3L 19539233..19539816 723..1306 100 -> Plus
3L 19539873..19540393 1307..1827 100   Plus

FI06002.pep Sequence

Translation from 441 to 1634

> FI06002.pep
MENPINFKDIPSEMPQPKRIQLEGETSVAEAINFLKTQCDTRKEHKPEEF
QQDGPTVADELNARLAMVHVRETRAKRIRRLVKFSPNETQALYRFICVCP
RYHPCYVPCQHTGQIIIDRDVLSREEHICFLATPKKDFSSPQLAKQARYY
TKKIYVNQCTARVERLADPHPMRVSDTYNFFKDYLSPRHIAALENQMKPK
PPVEAMSMEKALEYMEEEMRQRKAAKRVQKRRCKGLKKRIILRQRKQMQK
IICVLFEEMKDFLLNDQFIVDENSPLCCVILERLREFTDQEFYTTSNLQE
YQRILANNLTVWVNKFISNLNIYLTPQQIPVKRQMMAENDPEQFVPLSDF
ISVSDEADAEEMMNDVEHGAAEYDDYGYGEDYLPDVLNTDISEETII*

FI06002.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10054-PA 405 GF10054-PA 7..404 4..397 1758 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16043-PA 398 GG16043-PA 1..397 1..397 2048 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17181-PA 392 GH17181-PA 5..391 4..397 1248 62.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd7-PB 397 CG14098-PB 1..397 1..397 2088 100 Plus
Rcd7-PA 397 CG14098-PA 1..397 1..397 2088 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11794-PA 389 GI11794-PA 3..388 2..397 1293 64.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20940-PA 399 GL20940-PA 3..386 2..389 1435 69.1 Plus
Dper\GL23096-PA 399 GL23096-PA 5..396 4..397 1434 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27139-PA 401 GA27139-PA 3..386 2..389 1428 69.7 Plus
Dpse\GA28638-PA 399 GA28638-PA 3..394 2..392 1424 67.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19590-PA 398 GM19590-PA 1..397 1..397 2098 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14811-PA 398 GD14811-PA 1..397 1..397 2103 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13497-PA 392 GJ13497-PA 3..391 2..397 1362 66.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20231-PA 409 GK20231-PA 3..408 2..397 1427 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23209-PA 398 GE23209-PA 1..397 1..397 2053 95.2 Plus
Dyak\GE19608-PA 150 GE19608-PA 1..148 14..161 772 96.6 Plus

FI06002.hyp Sequence

Translation from 441 to 1634

> FI06002.hyp
MENPINFKDIPSEMPQPKRIQLEGETSVAEAINFLKTQCDTRKEHKPEEF
QQDGPTVADELNARLAMVHVRETRAKRIRRLVKFSPNETQALYRFICVCP
RYHPCYVPCQHTGQIIIDRDVLSREEHICFLATPKKDFSSPQLAKQARYY
TKKIYVNQCTARVERLADPHPMRVSDTYNFFKDYLSPRHIAALENQMKPK
PPVEAMSMEKALEYMEEEMRQRKAAKRVQKRRCKGLKKRIILRQRKQMQK
IICVLFEEMKDFLLNDQFIVDENSPLCCVILERLREFTDQEFYTTSNLQE
YQRILANNLTVWVNKFISNLNIYLTPQQIPVKRQMMAENDPEQFVPLSDF
ISVSDEADAEEMMNDVEHGAAEYDDYGYGEDYLPDVLNTDISEETII*

FI06002.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd7-PB 397 CG14098-PB 1..397 1..397 2088 100 Plus
Rcd7-PA 397 CG14098-PA 1..397 1..397 2088 100 Plus