BDGP Sequence Production Resources |
Search the DGRC for FI06015
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 60 |
Well: | 15 |
Vector: | pOTB7 |
Associated Gene/Transcript | r-cup-RA |
Protein status: | FI06015.pep: gold |
Sequenced Size: | 2158 |
Gene | Date | Evidence |
---|---|---|
r-cup | 2008-12-18 | 5.12 accounting |
2158 bp assembled on 2008-10-27
GenBank Submission: BT050477.1
> FI06015.complete TTCGATTTCGTTTTTTTGTAGCATTTATTTTTTAGGGTGTTTCCTGAATT TATTTTTATTTTTTTTTACTTGAGCGACAAGGAGACGTTGGTGCAGAATG AAGGACTCGAGTCAATCGGCGCCGGCAGGCCTTTTGGTGGCAAATCTGAA GTCTTGGGAAACGTTCGACTGGCCGACGGAGCAGCAGCGTTGGATCTACC GCAGTTGGGGTCAGTACTTTGCGCGGATGCGGAAGAACACCTTTGCCCAG AAGTACTTCGACAAATGCATCACAGAGAATGAGAGCACGGATCACAAGGC TCTTTATCTGCGCAGCAAATTCAAGAGATCGGTGGCCCTGACGCAGGACG CATTGGAGGATAGTTTGAGGGCCATGGAGGTAAGGCAGGCGTGGGACGCA AATGTGTCCATGGAGCTCGGAGATGCGCTCTACGATTTGAATCGGTTTGA GGAGAACAAGAGCCTGCTGCACGACAATGTCCGTCGGCATGCGGGCACCG CTCTAAAGAGCTTCGAGAATCGCCTCGTGGTAGTCGATGAGAATCTCAAG GATTGCACGGGCTTCAGCCTGGCCAACTTCTTCATGGAGCATTCCGCGCA GCTGCCCGGCTTCTATGCCCATCAGCAGGAGGAGCTTCGAAGGGCCGACA GGCGGCCGCTGTGGAAAATCCTCAAGGAGCGAAAGGAGTGTGATGTCCAG AGCAGGATCGATCGCAAGGAGGTGATGCTCTCCCCACTGGAAAGAGAGCG CAGGCGTCGCAAGACCAAGATATTTTATCAGAACTATTTGGGTCGCAGCT GGACCGATTTTTTCTTTCTGAAAACACTTCGCCGGCATCCCAACTGTCTT CTAGACAATCATTTCGGCTCCTCGGCGGACCGCACCAAGTATCTTGAGTA TGCGTTCCAGCGCCTTAAGACCTTCACACGGATGCTCCAGGCAAGGAGAC CCATGTACAAGGAGTACTTCCATCGGAATCCCCAGATAGAGGCTCGCATG CGGGATGCGAACTTGTTCCGGATCCAGTACCAAACCAGGCGAAACATGGT GAGCATCCTGCGGACCATTAAGGTGCTGCGGGGGCGGAATGATATCAAGC GCCTGCGCAAGTTTGTGGAGGAAGTGATGGGCAGCTACGTGGTCATCAAG ACGAATCGACTGATGCCCTGGAAGGCGGAGTTCATGAACGAGGTGTACAA CAATCTGGCCCTCAGTTTGTGCGAGGGATACCGCCTGCCGCCCACACGGG TCACGCCCTACGACAAGAGCGCCATGTGCCAGCTGCTCAACATACCGGTG GCCAAGCCGCTGGAGCACACGGAGCTCATCTTCGGGGATCGATCCACCTA CTCCTATGCCGGCGCCGACAAACAGAGCACCGATCGATTGGCAGACCAAA ACCAAATCGAGTATCTGGAGAAACGACTTCTCTTCGCCCGCCTGCCGATC GAAAGGAGCTACTTGCTCCATGAGCTGGCCGATCGGCATATGCAGAAGAA CCACTTTGTGCAGAGCCTGTCCTACGCCCAGAAGGCCATCGAGGAGGCCA GGGTATGCAATAGCCTGATCTGGGAGTTTCTTAGCACCATGCTGATGGCC AAGTCACACGCGGTGCTCCACAAGTACGAGCGCCAAACGGAGGTGCTCAA CTCCGCCTACGAACTGGCCGCCCAGCTCAAGTCGCCCCAACTGTGCACCT TCATCGAACTGTGCCGCATGCTCAACAAGGACTACATCACGTTGCGCAAG ATGTCCCAACTGGTGACCACCAAACGGCTGCGCACCAAAATCTCCAACAG GTCCAGTTTCCTCAGCTCACCCAACTGTTCGCCCAACTTCTCGGAATTCA AAAAGGAAGAGTATGGTCATTTGGCCGCCTAAGTCGGCGGATTGGATGGA AGGCAGTGCACATAGGCAGTGCCTTCTATTCGAACTGTTGCCTTTGGTCG GGCCAAGTGTCAGCCACAAAATCCGCTAAAACAAATCGAGTTCCTATCAG ATATCGTTAAAGTACAAGTTCAGAGCCAGATGTCTGTAGCATTTAAAGTA TGTCTTTACACGTAATGTAACTAAATCGTACAAATGCACTGAGAAAAAAA ACAACCAAAATCCTATAAATATATCTAAAGTTAAGCGTAAAAAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 20889946..20891045 | 1099..1 | 5310 | 99.5 | Minus |
chrX | 22417052 | chrX | 20888547..20889287 | 2138..1399 | 3625 | 99.6 | Minus |
chrX | 22417052 | chrX | 20889557..20889857 | 1398..1098 | 1505 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21024789..21025888 | 1099..1 | 5310 | 99.5 | Minus |
X | 23542271 | X | 21023389..21024130 | 2139..1399 | 3630 | 99.6 | Minus |
X | 23542271 | X | 21024400..21024700 | 1398..1098 | 1505 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21009881..21010980 | 1099..1 | 5340 | 99.4 | Minus |
X | 23527363 | X | 21008481..21009222 | 2139..1399 | 3640 | 99.5 | Minus |
X | 23527363 | X | 21009492..21009792 | 1398..1098 | 1505 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 20888547..20889287 | 1399..2138 | 99 | <- | Minus |
chrX | 20889557..20889855 | 1100..1398 | 100 | <- | Minus |
chrX | 20889946..20891045 | 1..1099 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..1785 | 98..1882 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..1785 | 98..1882 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..1785 | 98..1882 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..1785 | 98..1882 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..2140 | 1..2138 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..2140 | 1..2138 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..2140 | 1..2138 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..2140 | 1..2138 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-cup-RA | 1..2140 | 1..2138 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21023390..21024130 | 1399..2138 | 99 | <- | Minus |
X | 21024400..21024698 | 1100..1398 | 100 | <- | Minus |
X | 21024789..21025888 | 1..1099 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21023390..21024130 | 1399..2138 | 99 | <- | Minus |
X | 21024400..21024698 | 1100..1398 | 100 | <- | Minus |
X | 21024789..21025888 | 1..1099 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21023390..21024130 | 1399..2138 | 99 | <- | Minus |
X | 21024400..21024698 | 1100..1398 | 100 | <- | Minus |
X | 21024789..21025888 | 1..1099 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 20894417..20895157 | 1399..2138 | 99 | <- | Minus |
arm_X | 20895427..20895725 | 1100..1398 | 100 | <- | Minus |
arm_X | 20895816..20896915 | 1..1099 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21008482..21009222 | 1399..2138 | 99 | <- | Minus |
X | 21009492..21009790 | 1100..1398 | 100 | <- | Minus |
X | 21009881..21010980 | 1..1099 | 99 | Minus |
Translation from 97 to 1881
> FI06015.pep MKDSSQSAPAGLLVANLKSWETFDWPTEQQRWIYRSWGQYFARMRKNTFA QKYFDKCITENESTDHKALYLRSKFKRSVALTQDALEDSLRAMEVRQAWD ANVSMELGDALYDLNRFEENKSLLHDNVRRHAGTALKSFENRLVVVDENL KDCTGFSLANFFMEHSAQLPGFYAHQQEELRRADRRPLWKILKERKECDV QSRIDRKEVMLSPLERERRRRKTKIFYQNYLGRSWTDFFFLKTLRRHPNC LLDNHFGSSADRTKYLEYAFQRLKTFTRMLQARRPMYKEYFHRNPQIEAR MRDANLFRIQYQTRRNMVSILRTIKVLRGRNDIKRLRKFVEEVMGSYVVI KTNRLMPWKAEFMNEVYNNLALSLCEGYRLPPTRVTPYDKSAMCQLLNIP VAKPLEHTELIFGDRSTYSYAGADKQSTDRLADQNQIEYLEKRLLFARLP IERSYLLHELADRHMQKNHFVQSLSYAQKAIEEARVCNSLIWEFLSTMLM AKSHAVLHKYERQTEVLNSAYELAAQLKSPQLCTFIELCRMLNKDYITLR KMSQLVTTKRLRTKISNRSSFLSSPNCSPNFSEFKKEEYGHLAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21861-PA | 590 | GF21861-PA | 4..580 | 3..580 | 2271 | 71.8 | Plus |
Dana\GF23726-PA | 587 | GF23726-PA | 8..572 | 8..569 | 1045 | 39.9 | Plus |
Dana\GF13170-PA | 591 | GF13170-PA | 7..550 | 8..550 | 1013 | 40.7 | Plus |
Dana\GF17676-PA | 561 | GF17676-PA | 6..506 | 7..552 | 736 | 33.5 | Plus |
Dana\GF22339-PA | 640 | GF22339-PA | 12..598 | 10..552 | 675 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17563-PA | 594 | GG17563-PA | 1..594 | 1..594 | 2838 | 88.7 | Plus |
Dere\GG16202-PA | 579 | GG16202-PA | 6..563 | 9..560 | 1018 | 39.8 | Plus |
Dere\GG20893-PA | 580 | GG20893-PA | 8..558 | 9..561 | 949 | 38.3 | Plus |
Dere\GG14085-PA | 580 | GG14085-PA | 13..549 | 8..552 | 839 | 36 | Plus |
Dere\GG18182-PA | 538 | GG18182-PA | 62..515 | 109..560 | 620 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17765-PA | 382 | GH17765-PA | 5..362 | 210..571 | 990 | 54 | Plus |
Dgri\GH22765-PA | 581 | GH22765-PA | 10..567 | 9..570 | 971 | 38.5 | Plus |
Dgri\GH22763-PA | 576 | GH22763-PA | 6..557 | 7..560 | 954 | 37.8 | Plus |
Dgri\GH18307-PA | 572 | GH18307-PA | 2..556 | 1..564 | 845 | 35.2 | Plus |
Dgri\GH24905-PA | 617 | GH24905-PA | 18..574 | 8..543 | 632 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
r-cup-PA | 594 | CG10998-PA | 1..594 | 1..594 | 3102 | 100 | Plus |
CG7634-PA | 579 | CG7634-PA | 24..563 | 20..560 | 1025 | 40.1 | Plus |
CG15128-PA | 580 | CG15128-PA | 8..558 | 9..561 | 959 | 38.9 | Plus |
wa-cup-PB | 580 | CG10113-PB | 13..549 | 8..552 | 842 | 36.1 | Plus |
p-cup-PA | 538 | CG12993-PA | 44..529 | 91..574 | 623 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15098-PA | 577 | GI15098-PA | 19..570 | 20..570 | 1398 | 50.1 | Plus |
Dmoj\GI11337-PA | 569 | GI11337-PA | 17..554 | 15..552 | 1056 | 41.4 | Plus |
Dmoj\GI18542-PA | 573 | GI18542-PA | 9..556 | 9..559 | 967 | 38.6 | Plus |
Dmoj\GI18541-PA | 465 | GI18541-PA | 1..431 | 69..539 | 749 | 36.3 | Plus |
Dmoj\GI24120-PA | 579 | GI24120-PA | 6..533 | 7..550 | 682 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15914-PA | 624 | GL15914-PA | 14..579 | 7..578 | 1917 | 63.1 | Plus |
Dper\GL24992-PA | 587 | GL24992-PA | 10..577 | 9..575 | 1066 | 39.5 | Plus |
Dper\GL22231-PA | 577 | GL22231-PA | 7..552 | 7..551 | 1063 | 41.1 | Plus |
Dper\GL14902-PA | 594 | GL14902-PA | 10..563 | 9..551 | 990 | 39 | Plus |
Dper\GL11726-PA | 579 | GL11726-PA | 6..568 | 7..570 | 965 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10698-PA | 624 | GA10698-PA | 10..579 | 3..578 | 1922 | 62.8 | Plus |
Dpse\GA27427-PA | 577 | GA27427-PA | 7..552 | 7..551 | 1051 | 40.5 | Plus |
Dpse\GA25385-PA | 594 | GA25385-PA | 10..563 | 9..551 | 986 | 39 | Plus |
Dpse\GA13516-PA | 579 | GA13516-PA | 6..568 | 7..570 | 969 | 36.9 | Plus |
Dpse\GA10082-PA | 565 | GA10082-PA | 10..547 | 8..553 | 886 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\r-cup-PA | 594 | GM22647-PA | 1..594 | 1..594 | 3125 | 97.1 | Plus |
Dsec\GM10962-PA | 580 | GM10962-PA | 13..557 | 8..560 | 860 | 36.7 | Plus |
Dsec\GM19817-PA | 454 | GM19817-PA | 1..433 | 124..561 | 783 | 39.6 | Plus |
Dsec\GM22384-PA | 503 | GM22384-PA | 6..487 | 9..560 | 734 | 33.7 | Plus |
Dsec\GM13314-PA | 538 | GM13314-PA | 54..515 | 101..560 | 597 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\r-cup-PA | 595 | GD19350-PA | 1..595 | 1..594 | 3106 | 96.8 | Plus |
Dsim\GD14973-PA | 579 | GD14973-PA | 6..563 | 9..560 | 1035 | 40.5 | Plus |
Dsim\GD25309-PA | 579 | GD25309-PA | 8..558 | 9..561 | 971 | 39.2 | Plus |
Dsim\GD19937-PA | 580 | GD19937-PA | 13..557 | 8..560 | 852 | 36.5 | Plus |
Dsim\GD17357-PA | 538 | GD17357-PA | 29..515 | 79..560 | 604 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11593-PA | 566 | GJ11593-PA | 8..566 | 7..571 | 1036 | 39.3 | Plus |
Dvir\GJ21411-PA | 583 | GJ21411-PA | 8..555 | 8..559 | 948 | 38 | Plus |
Dvir\GJ10942-PA | 562 | GJ10942-PA | 9..541 | 8..551 | 836 | 35.7 | Plus |
Dvir\GJ21410-PA | 836 | GJ21410-PA | 323..807 | 55..539 | 830 | 38.1 | Plus |
Dvir\GJ18908-PA | 257 | GJ18908-PA | 3..241 | 334..572 | 752 | 59.8 | Plus |
Dvir\GJ21410-PA | 836 | GJ21410-PA | 7..329 | 17..336 | 523 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15695-PA | 573 | GK15695-PA | 19..573 | 20..581 | 1080 | 41.1 | Plus |
Dwil\GK20327-PA | 580 | GK20327-PA | 9..578 | 8..576 | 1076 | 42.6 | Plus |
Dwil\GK12012-PA | 571 | GK12012-PA | 10..559 | 13..566 | 922 | 37.9 | Plus |
Dwil\GK20040-PA | 430 | GK20040-PA | 10..270 | 9..262 | 785 | 58.6 | Plus |
Dwil\GK19955-PA | 648 | GK19955-PA | 7..590 | 4..552 | 681 | 32.4 | Plus |
Dwil\GK20040-PA | 430 | GK20040-PA | 275..403 | 437..565 | 557 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15324-PA | 591 | GE15324-PA | 1..591 | 1..590 | 2859 | 90 | Plus |
Dyak\GE19772-PA | 579 | GE19772-PA | 6..563 | 9..560 | 1021 | 40 | Plus |
Dyak\GE23266-PA | 579 | GE23266-PA | 6..563 | 9..560 | 1016 | 39.9 | Plus |
Dyak\GE13833-PA | 580 | GE13833-PA | 8..558 | 9..561 | 955 | 38.6 | Plus |
Dyak\GE24930-PA | 540 | GE24930-PA | 13..517 | 8..560 | 748 | 33.5 | Plus |
Translation from 97 to 1881
> FI06015.hyp MKDSSQSAPAGLLVANLKSWETFDWPTEQQRWIYRSWGQYFARMRKNTFA QKYFDKCITENESTDHKALYLRSKFKRSVALTQDALEDSLRAMEVRQAWD ANVSMELGDALYDLNRFEENKSLLHDNVRRHAGTALKSFENRLVVVDENL KDCTGFSLANFFMEHSAQLPGFYAHQQEELRRADRRPLWKILKERKECDV QSRIDRKEVMLSPLERERRRRKTKIFYQNYLGRSWTDFFFLKTLRRHPNC LLDNHFGSSADRTKYLEYAFQRLKTFTRMLQARRPMYKEYFHRNPQIEAR MRDANLFRIQYQTRRNMVSILRTIKVLRGRNDIKRLRKFVEEVMGSYVVI KTNRLMPWKAEFMNEVYNNLALSLCEGYRLPPTRVTPYDKSAMCQLLNIP VAKPLEHTELIFGDRSTYSYAGADKQSTDRLADQNQIEYLEKRLLFARLP IERSYLLHELADRHMQKNHFVQSLSYAQKAIEEARVCNSLIWEFLSTMLM AKSHAVLHKYERQTEVLNSAYELAAQLKSPQLCTFIELCRMLNKDYITLR KMSQLVTTKRLRTKISNRSSFLSSPNCSPNFSEFKKEEYGHLAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
r-cup-PA | 594 | CG10998-PA | 1..594 | 1..594 | 3102 | 100 | Plus |
CG7634-PA | 579 | CG7634-PA | 24..563 | 20..560 | 1025 | 40.1 | Plus |
CG15128-PA | 580 | CG15128-PA | 8..558 | 9..561 | 959 | 38.9 | Plus |
wa-cup-PB | 580 | CG10113-PB | 13..549 | 8..552 | 842 | 36.1 | Plus |
p-cup-PA | 538 | CG12993-PA | 44..529 | 91..574 | 623 | 32.4 | Plus |