Clone FI06020 Report

Search the DGRC for FI06020

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:60
Well:20
Vector:pOTB7
Associated Gene/TranscriptRpn3-RA
Protein status:FI06020.pep: gold
Sequenced Size:1824

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Dox-A2 2008-08-15 Release 5.9 accounting
Dox-A2 2008-12-18 5.12 accounting

Clone Sequence Records

FI06020.complete Sequence

1824 bp assembled on 2008-08-11

GenBank Submission: BT044249.1

> FI06020.complete
GTGAGACTGAAAGTTCGCTCAGTGTACCGTAAAACGTATCGATAAATTGA
AACGTAACGGCTTAACAGCTCTGTTAACCAACTAAATTTACCAGCACTGC
CTGCAGCCGAAAACGAATAAGAAGAAGAAGCGACATTACTAGGCATTTTT
GATTGGGATTGGGAAAAACAAAAGAAAAGTCGGCTATATTTGTGACCCCA
GTAAATTGAGAGTTCCATTACAAAATGACCAACGCAACGGACATCGGTGC
TAACGACGTGGAGATGGAGGTGGATCCAACGGCGGAGACGCTGGCTGACG
AGAAGAAGAACCAAGATGTGGCCGCCGTGCAGGAGATCCGCGAGCAGATT
CGTCAGATTGAGAAGGGGGTAGCCTCGAAAGAGTCGCGCTTCATCCTGCG
CGTCCTTCGCAATTTGCCCAACACTCGTCGCAAGCTGAACGGCGTCGTCT
TCCGGAATCTTGCACAGAGTATTTACCCCGCTGGTGCAGATCGTGAGGCG
GCCGTGGCTTTGATGCCCGCTGTGGAGAAAGACGCCACCGAGCTGCCCGA
TGTTCCCAAAAAACAAGTTGCCACCAAGGCTCCAATCGCCGAGGTCGATG
CCTACTTCTACCTGCTCCTGCTGGTCAAGCTCATCGACGCCAGTGATTTA
AAGCGGGCCGGAATTAGCGCCGACGCCCTAATGGCCAAAATCTCCATCCA
AAACCGACGCACCCTTGATCTGATTGGTGCCAAGTCCTACTTCTATTTTT
CAAGAGTGGCGGAGCTAAAAAACTCACTGGAAGGCATCCGATCCTTCCTG
CACGCTCGTCTGCGCACCGCTACGCTGCGTAATGATTTTGAAGGCCAGGC
GGTGCTTATTAACTGTTTGCTCCGCAACTACTTGCACTATGCTTTGTACG
ACCAAGCCGACAAGCTGGTAAAGAAATCCGTCTACCCGGAATCGGCCAGC
AACAATGAATGGGCGCGTTTCCTGTACTATCTAGGTCGGATTAAGGCCGC
TAAGCTGGAGTACAGCGATGCCCACAAGCATCTGGTCCAGGCCCTGCGTA
AGTCGCCGCAGCACGCTGCCATTGGCTTTCGTCAGACGGTTCAAAAGCTA
ATTATCGTTGTGGAGCTGCTTTTGGGCAACATCCCGGAGCGTGTGGTGTT
CCGGCAAGCCGGTCTTCGCCAATCTCTTGGTGCCTACTTCCAGCTCACGC
AGGCCGTGCGTCTGGGCAACTTGAAGCGCTTCGGCGACGTGGTATCCCAA
TACGGACCCAAGTTCCAACTGGACCACACATTCACCCTGATTATCCGGCT
GCGCCACAATGTGATCAAGACGGCAATCCGCTCCATCGGACTATCGTACT
CACGCATCTCGCCGCAAGACATTGCCAAGCGGCTAATGCTAGACTCCGCG
GAGGATGCCGAGTTTATTGTATCGAAGGCTATACGGGACGGCGTGATTGA
GGCTACGTTGGACCCAGCCCAGAATTTCATGCGCAGCAAGGAAAGTACGG
ACATCTACAGCACCCGGGAACCGCAGCTGGCCTTTCACGAGCGCATCTCG
TTCTGCCTGAACCTGCACAACCAGAGCGTTAAGGCCATGCGCTATCCCCC
AAAGTCCTACGGCAAGGATTTGGAGAGCGCCGAGGAGAGACGCGAGCGGG
AGCAGCAGGACCTTGAGCTGGCCAAGGAGATGGCCGAGGATGATGAGGAT
GGTTTCTAAGCGGCTGATTCTGCAAATTAATTTGTGCTTGCATTCATTTT
TATAGAAATATAATCCGCAATTAAATAAGTTACAATAATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

FI06020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn3-RA 1837 Rpn3-RA 2..1789 2..1789 8850 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19050895..19052296 388..1789 6965 99.8 Plus
chr2L 23010047 chr2L 19050448..19050834 2..388 1905 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:15:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19052278..19053679 388..1789 6950 99.7 Plus
2L 23513712 2L 19051831..19052217 2..388 1905 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19052278..19053679 388..1789 6950 99.7 Plus
2L 23513712 2L 19051831..19052217 2..388 1905 99.4 Plus
Blast to na_te.dros performed on 2019-03-16 20:33:36 has no hits.

FI06020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:34:51 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19050447..19050834 1..388 99 -> Plus
chr2L 19050896..19052296 389..1789 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:51:52 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Dox-A2-RA 1..1485 225..1709 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:40 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RA 1..1485 225..1709 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:39 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RB 1..1485 225..1709 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:12 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Dox-A2-RA 1..1485 225..1709 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:35 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RB 1..1485 225..1709 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:48:59 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Dox-A2-RA 2..1789 2..1789 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:40 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RA 2..1789 2..1789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:39 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RA 41..1829 1..1789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:11 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Dox-A2-RA 2..1789 2..1789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:35 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn3-RA 41..1829 1..1789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:51 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19051830..19052217 1..388 99 -> Plus
2L 19052279..19053679 389..1789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:51 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19051830..19052217 1..388 99 -> Plus
2L 19052279..19053679 389..1789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:51 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19051830..19052217 1..388 99 -> Plus
2L 19052279..19053679 389..1789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:39 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19051830..19052217 1..388 99 -> Plus
arm_2L 19052279..19053679 389..1789 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:35 Download gff for FI06020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19051830..19052217 1..388 99 -> Plus
2L 19052279..19053679 389..1789 99   Plus

FI06020.pep Sequence

Translation from 224 to 1708

> FI06020.pep
MTNATDIGANDVEMEVDPTAETLADEKKNQDVAAVQEIREQIRQIEKGVA
SKESRFILRVLRNLPNTRRKLNGVVFRNLAQSIYPAGADREAAVALMPAV
EKDATELPDVPKKQVATKAPIAEVDAYFYLLLLVKLIDASDLKRAGISAD
ALMAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTAT
LRNDFEGQAVLINCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFL
YYLGRIKAAKLEYSDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLL
GNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLD
HTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAEDAEFIVS
KAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQ
SVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF*

FI06020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14695-PA 494 GF14695-PA 1..494 1..494 2551 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21155-PA 494 GG21155-PA 1..494 1..494 2598 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10894-PA 494 GH10894-PA 1..494 1..494 2413 93.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn3-PA 494 CG10484-PA 1..494 1..494 2467 100 Plus
Rpn3-PB 494 CG42641-PB 1..494 1..494 2467 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13097-PA 495 GI13097-PA 3..495 2..494 2364 93.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26159-PA 496 GL26159-PA 1..496 1..494 2450 95.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10344-PA 496 GA10344-PA 1..496 1..494 2448 95 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17319-PA 494 GM17319-PA 1..494 1..494 2593 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24178-PA 494 GD24178-PA 1..494 1..494 2598 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11636-PA 495 GJ11636-PA 1..495 1..494 2418 93.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24169-PA 500 GK24169-PA 1..500 1..494 2358 90.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13227-PA 494 GE13227-PA 1..494 1..494 2594 99.2 Plus

FI06020.hyp Sequence

Translation from 224 to 1708

> FI06020.hyp
MTNATDIGANDVEMEVDPTAETLADEKKNQDVAAVQEIREQIRQIEKGVA
SKESRFILRVLRNLPNTRRKLNGVVFRNLAQSIYPAGADREAAVALMPAV
EKDATELPDVPKKQVATKAPIAEVDAYFYLLLLVKLIDASDLKRAGISAD
ALMAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTAT
LRNDFEGQAVLINCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFL
YYLGRIKAAKLEYSDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLL
GNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLD
HTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAEDAEFIVS
KAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQ
SVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF*

FI06020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn3-PA 494 CG10484-PA 1..494 1..494 2467 100 Plus
Rpn3-PB 494 CG42641-PB 1..494 1..494 2467 100 Plus