Clone FI06021 Report

Search the DGRC for FI06021

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:60
Well:21
Vector:pOTB7
Associated Gene/Transcriptcoil-RD
Protein status:FI06021.pep: gold
Sequenced Size:2061

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
coilin 2008-12-18 5.12 accounting

Clone Sequence Records

FI06021.complete Sequence

2061 bp assembled on 2008-10-24

GenBank Submission: BT050478.1

> FI06021.complete
GCACATTTAAAATCATTTTAATCATAAGAAAACTAAGTCAAAAATGCAAC
ACTCCAGCATGAAGGTGGATCTATCAAACTTTTTCAAGGACGAACGACGA
AATTCGTTGGTTTTCATCGATGCAGCATGGAACAACATCAAGGACCTCCA
GGACCACATACAAAACCTCTTCAGCTTGAAGGACATTAGTCTGCTCACCT
CAGATGGATGCTATCTGCCCCCGAGGGAGTCTATCAAAGTGTTGAACTCT
GCCGAAGGACTCAAAGCCTTTCGGTTTGCCAGCCACGATAGTGATACCTT
TGTGAGCCCTGCTCCTGTAAAATCCAGTAAAAAGCGCAAGAATCGATCCG
TCGAGGAACAGGTTCACCTAACCGCCTCCACTCCCCTCCGACCTTCAAAG
CGCTCCAAGAACCAGAACAACTCAGAATGGATAAATATTGCAGAAAACCC
ATCTCGTGTGAGAAAGAAGGAGTTGCTAGATATGGCTCCTGGACCTTCTG
TACAATCAAAGCTCTTGACAAACAAAGGCACTCCAAAGGCCCCTGAAACT
CAGACAGAAGTTTCTAACATGTCAGCGAACATCGAGACAGAGAACAAGGA
ATCTGCTCCTCAGATTAAAAATAAATCCAAAAACAAGAAACCGACCAAAT
CGCCCGAGGCATCTGACCAGGTAGAGAATGAACCTGCTCCTAAGAGTATT
TCTCGATGCACGCTCAAGGAGGGTAAAATGTCAGAAAGCAAGAATCAAGA
GACATCGCCTGACATTCTATCAGAAAAATCTGGTGTGGTAACGAAGGAAA
ACGAAACTCGAGAGGAGCAACAGGACAAAACACACTTGGAGTCCAACAAA
ATTCCGGATAAACTATCTCAACTGAAAGCAGGGGACCAAATTGAGAAGAG
TCCTGGCATTGCTGCTAGCCTCCTATCGATTTCGTTCCGCTCCCCTCTCT
TGGAGATGCCCTTTAATGTTCCGCGCATATTTCAATTTCCCACTAAAAAA
CAACAAATTGAAATTCTGGAATATAAAAAACTTAAGCCCATCAGTCCTCG
TTTTTTGCTGCAGAAAGGGGCTAAGAGTGATGATACGGCTAAACAATTCC
CAAGCAATGGGAAGGATTCAACCTTAAAGCCTAAATCCTACGAAATTTTG
CACGACGAAGAATTACCAGATGTAAAGGATAAAAAAAATGTTTCAGAAGG
TATAAAGAGAGCAGTTGCACCTCTTTGCGAAGACATCATTGAAACATCAA
CCACTCTTCCGGGGGCCATAGGAGCAGTTGAATCCGCTTATCTGGACAAT
TCGACTGAAGCTGAGACCACTCTTCCGTCCGAAGCTGAAGCAACTAATCC
ACTTGAACTTACTGAGTCATTTCTACAGAACAACACATCTATGGAAAAAA
CACCCAAAGTCGAAAAAATTTTGCCAGATGACGGAAGTGCATCTCCGATT
AAAAATAACGTTGATTCGAAGGATGTTAAAACGGTAACAGTGCCCATTTT
TGAGGAACAACTAGTATCCGATTCCGACGACGATGTGATGTTGGTAGACG
ACTCCAATATCGACGTTTCATACGGCGACTCTGATATTGAACCGATTCCA
GTAGTAGAAAATAGGCAATCTTTGGATATTATAAGGGACCTACTGCGGAC
TGCAACTCCACTCAATAGCCTGCCGTCCAGGGGCGATACGGTTATATTTA
AACTGCTGAAGATTAAGGGAAACGCCAATTCTGGCACAACCGAATTTGTC
GCCGGGAGGTGCACTTACGTTAACCGGCGCACCAAAATTGTCACAGTGGA
AACAATAACTTATCCCCCCGAAATCGGTCGCATGTTGCGTCAATATTATA
TGAGTGGGTTGGACGAGTCTTCTGAGGATGTGCGAACTTTAAGTATTCAT
CTCAAAGATATGCTTGAAGCGAAAATCATTGTAGCCACAATTGACTGATT
ATCATTTTTGTGTGTACATTCTTGAGTTCTATTTCCAGGGTTTCGTACAT
TTATAGCTTTTAAAATACAAACGATTAAACAACATCTAAAAAAAAAAAAA
AAAAAAAAAAA

FI06021.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
coilin-RD 2123 coilin-RD 80..2117 1..2038 10160 99.9 Plus
coilin-RC 2079 coilin-RC 300..2073 265..2038 8840 99.8 Plus
coilin-RC 2079 coilin-RC 1..245 20..264 1225 100 Plus
CG2158-RA 1986 CG2158-RA 1891..1986 2038..1943 480 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4013022..4014358 1601..265 6670 99.9 Minus
chr2R 21145070 chr2R 4012470..4012698 2037..1809 1130 99.6 Minus
chr2R 21145070 chr2R 4012756..4012964 1808..1600 1045 100 Minus
chr2R 21145070 chr2R 4014554..4014731 178..1 890 100 Minus
chr2R 21145070 chr2R 4014413..4014499 264..178 435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:15:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8125533..8126869 1601..265 6670 99.9 Minus
2R 25286936 2R 8124980..8125209 2038..1809 1135 99.6 Minus
2R 25286936 2R 8125267..8125475 1808..1600 1045 100 Minus
2R 25286936 2R 8127065..8127242 178..1 890 100 Minus
2R 25286936 2R 8126924..8127010 264..178 435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8126732..8128068 1601..265 6670 99.9 Minus
2R 25260384 2R 8126179..8126408 2038..1809 1135 99.5 Minus
2R 25260384 2R 8126466..8126674 1808..1600 1045 100 Minus
2R 25260384 2R 8128264..8128441 178..1 890 100 Minus
2R 25260384 2R 8128123..8128209 264..178 435 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:51:48 has no hits.

FI06021.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:52:49 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4012470..4012698 1809..2037 99 <- Minus
chr2R 4012756..4012962 1602..1808 100 <- Minus
chr2R 4013022..4014358 265..1601 99 <- Minus
chr2R 4014413..4014498 179..264 100 <- Minus
chr2R 4014554..4014731 1..178 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:51:53 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coilin-RD 1..1905 44..1948 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:15 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..1905 44..1948 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:09 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..1905 44..1948 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:11 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..1905 44..1948 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:55:46 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coilin-RD 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:15 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:09 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-24 11:55:21 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coilin-RD 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:11 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
coil-RD 1..2037 1..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:49 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8124981..8125209 1809..2037 99 <- Minus
2R 8125267..8125473 1602..1808 100 <- Minus
2R 8125533..8126869 265..1601 99 <- Minus
2R 8126924..8127009 179..264 100 <- Minus
2R 8127065..8127242 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:49 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8124981..8125209 1809..2037 99 <- Minus
2R 8125267..8125473 1602..1808 100 <- Minus
2R 8125533..8126869 265..1601 99 <- Minus
2R 8126924..8127009 179..264 100 <- Minus
2R 8127065..8127242 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:49 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8124981..8125209 1809..2037 99 <- Minus
2R 8125267..8125473 1602..1808 100 <- Minus
2R 8125533..8126869 265..1601 99 <- Minus
2R 8126924..8127009 179..264 100 <- Minus
2R 8127065..8127242 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:09 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4014429..4014514 179..264 100 <- Minus
arm_2R 4014570..4014747 1..178 100   Minus
arm_2R 4012486..4012714 1809..2037 99 <- Minus
arm_2R 4012772..4012978 1602..1808 100 <- Minus
arm_2R 4013038..4014374 265..1601 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:12 Download gff for FI06021.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8126180..8126408 1809..2037 99 <- Minus
2R 8126466..8126672 1602..1808 100 <- Minus
2R 8126732..8128068 265..1601 99 <- Minus
2R 8128123..8128208 179..264 100 <- Minus
2R 8128264..8128441 1..178 100   Minus

FI06021.pep Sequence

Translation from 43 to 1947

> FI06021.pep
MQHSSMKVDLSNFFKDERRNSLVFIDAAWNNIKDLQDHIQNLFSLKDISL
LTSDGCYLPPRESIKVLNSAEGLKAFRFASHDSDTFVSPAPVKSSKKRKN
RSVEEQVHLTASTPLRPSKRSKNQNNSEWINIAENPSRVRKKELLDMAPG
PSVQSKLLTNKGTPKAPETQTEVSNMSANIETENKESAPQIKNKSKNKKP
TKSPEASDQVENEPAPKSISRCTLKEGKMSESKNQETSPDILSEKSGVVT
KENETREEQQDKTHLESNKIPDKLSQLKAGDQIEKSPGIAASLLSISFRS
PLLEMPFNVPRIFQFPTKKQQIEILEYKKLKPISPRFLLQKGAKSDDTAK
QFPSNGKDSTLKPKSYEILHDEELPDVKDKKNVSEGIKRAVAPLCEDIIE
TSTTLPGAIGAVESAYLDNSTEAETTLPSEAEATNPLELTESFLQNNTSM
EKTPKVEKILPDDGSASPIKNNVDSKDVKTVTVPIFEEQLVSDSDDDVML
VDDSNIDVSYGDSDIEPIPVVENRQSLDIIRDLLRTATPLNSLPSRGDTV
IFKLLKIKGNANSGTTEFVAGRCTYVNRRTKIVTVETITYPPEIGRMLRQ
YYMSGLDESSEDVRTLSIHLKDMLEAKIIVATID*

FI06021.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11211-PA 802 GF11211-PA 1..133 1..137 423 61.6 Plus
Dana\GF11211-PA 802 GF11211-PA 683..802 516..634 304 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10675-PA 606 GG10675-PA 1..606 1..634 1979 67.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19986-PA 166 GH19986-PA 13..166 484..634 327 43.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
coil-PD 634 CG8710-PD 1..634 1..634 3205 100 Plus
coil-PE 633 CG8710-PE 1..633 1..634 3189 99.8 Plus
coil-PC 488 CG8710-PC 1..488 147..634 2457 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20273-PA 487 GI20273-PA 1..139 1..140 363 53.6 Plus
Dmoj\GI20273-PA 487 GI20273-PA 355..487 498..634 298 42.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17381-PA 632 GL17381-PA 477..629 477..630 284 43.2 Plus
Dper\GL17381-PA 632 GL17381-PA 1..125 1..127 264 46.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21272-PA 586 GA21272-PA 432..583 476..630 276 40.4 Plus
Dpse\GA21272-PA 586 GA21272-PA 1..125 1..127 264 46.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20722-PA 613 GM20722-PA 1..613 1..634 2637 84.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10190-PA 442 GD10190-PA 1..442 176..634 1774 80.9 Plus
Dsim\GD10189-PA 119 GD10189-PA 8..117 46..155 528 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20226-PA 525 GJ20226-PA 25..297 1..326 361 34.5 Plus
Dvir\GJ20226-PA 525 GJ20226-PA 384..525 490..634 343 46.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22926-PA 468 GK22926-PA 330..468 490..634 369 49.7 Plus
Dwil\GK22926-PA 468 GK22926-PA 1..125 1..124 331 53.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23301-PA 624 GE23301-PA 1..624 1..634 2062 69.2 Plus

FI06021.hyp Sequence

Translation from 43 to 1947

> FI06021.hyp
MQHSSMKVDLSNFFKDERRNSLVFIDAAWNNIKDLQDHIQNLFSLKDISL
LTSDGCYLPPRESIKVLNSAEGLKAFRFASHDSDTFVSPAPVKSSKKRKN
RSVEEQVHLTASTPLRPSKRSKNQNNSEWINIAENPSRVRKKELLDMAPG
PSVQSKLLTNKGTPKAPETQTEVSNMSANIETENKESAPQIKNKSKNKKP
TKSPEASDQVENEPAPKSISRCTLKEGKMSESKNQETSPDILSEKSGVVT
KENETREEQQDKTHLESNKIPDKLSQLKAGDQIEKSPGIAASLLSISFRS
PLLEMPFNVPRIFQFPTKKQQIEILEYKKLKPISPRFLLQKGAKSDDTAK
QFPSNGKDSTLKPKSYEILHDEELPDVKDKKNVSEGIKRAVAPLCEDIIE
TSTTLPGAIGAVESAYLDNSTEAETTLPSEAEATNPLELTESFLQNNTSM
EKTPKVEKILPDDGSASPIKNNVDSKDVKTVTVPIFEEQLVSDSDDDVML
VDDSNIDVSYGDSDIEPIPVVENRQSLDIIRDLLRTATPLNSLPSRGDTV
IFKLLKIKGNANSGTTEFVAGRCTYVNRRTKIVTVETITYPPEIGRMLRQ
YYMSGLDESSEDVRTLSIHLKDMLEAKIIVATID*

FI06021.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
coil-PD 634 CG8710-PD 1..634 1..634 3205 100 Plus
coil-PE 633 CG8710-PE 1..633 1..634 3189 99.8 Plus
coil-PC 488 CG8710-PC 1..488 147..634 2457 100 Plus