Clone FI06402 Report

Search the DGRC for FI06402

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:64
Well:2
Vector:pOT2
Associated Gene/TranscriptPvf3-RD
Protein status:FI06402.pep: gold
Sequenced Size:2412

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Pvf3 2008-12-18 5.12 accounting

Clone Sequence Records

FI06402.complete Sequence

2412 bp assembled on 2008-10-23

GenBank Submission: BT050481.1

> FI06402.complete
ATAAAATCCCCGCGGTGAAACGCAACGATCTTCGAAATGCATTGGCTAGT
TCTGATACTAGTGCCCCTCGTCTGGGCCAATAGCAGTGATCTAAAGGGAG
CACCTGTGATGACCACAGTAGCCCCGACTGGCGGTCATCGAAGTCCCCAT
CAGCAGCAGAGATTGCAGCAATTGCAGGAGGCGCAACAACTGGAGGCCCA
TCAGCAGCACCATCATCATTTGCGGCACGAACAGCATCTGCGGGCCGAAC
TGGAGGGCAACCATCAGCCGCCGATCGAGGATGTCGAGAAGAAGGCCTTC
CTCGATCCCCAATTGCCCATGCAGCAGCATCACTTGCGTCATCACAATCG
TCATCATGCGAGCTGGGAGCAGCGGGTATTTCCCTCGCTGCGTCATCAGC
AGCACCGCTTGTCCATCGGACCGAGCACGGCCAAGAACCTAATGACCACC
GAGGCACCCACAACCAGGCACCATGGCCTGATCTCCAATCACAGTCGCTA
TTTTGACAGGGACGGCATCTTTCCATCCTGGGCTGAGCCTCGAACCACCA
GAGGTCCCAATTGGCGACAGGAGGTGGACTCGAGTGATTCCGACGAGGAC
AGCGATGAGGATGACGAAGATGACTACGATGAGTATGATGAGGATGGCGA
TACCTCGAATGGCGTTGATGAGGAACTGGCCCGACAAATGCCCAGATATT
CGCTGTTCACCCAGAAGTTGCCACACATCGATTTAAAGGATACCGATTAC
AATGCGTACGACCAGTCGGATGAACTGGACATAGTTTCGAGTAGCAATCG
CAACAGCAACAAGTATCCCAGCGTGGCCAATCCGCACGACAAGTCTGCTG
GCAAGCGGAATATATTCGATTGGCTGTTCAAACATGATAGGGAAAAAGAG
GCTGTTAAAAAGCCACACATCACAACTACTTCAACGACAACAACAACCTC
AACAACCAGCACAGTAAAGCCCACAATAATGCGAACCGAAAGGCCAAAAC
TGCAATTAATTGATGCGAATCTAAAGAATGGCGGTGGCGAAGAGGACGAC
TCCAATGAGGATTCAGACTCCGAGTCGGAGGAGGGCTTCTCCAATGAACA
GTGGAACAAAATCGAGCACCAACACCATCTCAGGCAGCAGAAACACCAGA
AAGAACTACTGGCGATGCGAGAGAAGAGCCGGAATACCCCTCTCATAAGG
AACATTGAGAATGAGGTAAGTGCTGCAAAGACATTAGAAGACAATGATGG
CCATGATGTGGAGAACATTTACGCACGCAATTATGTTGCGGCGAAAGTTG
GCCAGAAGAAGGAGGACCAGTTGGGAACCCCCGAAGCGGTGATCAAAGCG
AGACGCCTCCATGCTCAGAAGCAGAAGAGTGAACGAGCTCTTGCCCACGC
CCATATGAACCAGGTGCTGAAGGAGGCCACCTGCCGCATTCCCCAGAAAC
GTTGTCAGCTGGTCCAGCAGGATCCTTCCAAGATCTATACGCCTCACTGC
ACCATCCTGCATCGCTGCAGCGAGGACAGTGGTTGTTGCCCCAGCAGAAG
CCAAATTTGTGCCGCCAAGAGCACCCACAACGTTGAGCTGCACTTCTTCG
TGAAGAGCAGTAAGCATCGCAGTGTAATCGAGAAGCGAACCTTTGTGAAC
CACACGGAGTGCCACTGCATCGAACGATCGACCTACAACGAGGAGACGGC
CATGGCCCACTACGGCCAGTCGGTGGTGCGGGCCACCATACTGAGTTGCA
CCTGTCCGAAGAGCTTTGAGAAGATCCTGCAGGACGATGGGCAGTGCAGG
TGCGACTGCAGCTCCGGCAACTACGACTGCGACTGGCTGAAGCGGGGCAA
CGAGCACTTTGCCATGAACGATCGCAAGTGCATACAGCAAGGTCGCTGCA
AGCCGCCCACGTGTGAGTTTGGATTGTACATGGACAAACACGGTCGCTGT
CCCAAGCAACACGAACAGCCATCCTACAATGCCATGTCATAAGCGGGAGG
AATCCCAACGTGAAGCCAGGAAAAGTATTATTTGGTCTGAAGAAAACTCA
AATCTCAAACAAAGAGGAAAATCCAGAGCGATTCTTCTCTTCTGACAAGA
GTAAAGGCGAAATGAGAGACGTGAATTTAGTTGCATATCCTATACAAAAC
AATAAGAAAGTAAAACGATGGGTCGATTAGCAAGAAGCACTTTAAAGCAT
TTCTAGGAGTTTTCCCTCCTTGAAATCTGTAATGTCTAGAACAGAATAAT
TGGAACAAATAAATCTATACATGGGTTGGGTCGGAAAACAACCAAAATGA
ATATTCGACAACAAGCAGAAAAAAAATAACATTTTCTACAGGTTTAAATC
AAAATTAAAGTTGAGAAAACTTTTACTAAGAAAAGTATAAAACAAAAAAA
AAAAAAAAAAAA

FI06402.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RD 2393 Pvf3-RD 1..2393 1..2393 11965 100 Plus
Pvf3.j 4843 Pvf3.j 983..2198 1..1216 6080 100 Plus
Pvf3.e 4320 Pvf3.e 460..1675 1..1216 6080 100 Plus
Pvf3.j 4843 Pvf3.j 2198..3337 1255..2394 5700 100 Plus
Pvf3.e 4320 Pvf3.e 1675..2814 1255..2394 5700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7154556..7155776 1221..1 5895 98.9 Minus
chr2L 23010047 chr2L 7098763..7099278 2393..1878 2550 99.6 Minus
chr2L 23010047 chr2L 7099346..7099626 1880..1600 1360 98.9 Minus
chr2L 23010047 chr2L 7106233..7106450 1603..1386 1090 100 Minus
chr2L 23010047 chr2L 7106515..7106651 1387..1251 670 99.3 Minus
chr2L 23010047 chr2L 7117980..7118021 1255..1214 210 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:16:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7155481..7156701 1221..1 6090 99.9 Minus
2L 23513712 2L 7099691..7100207 2394..1878 2585 100 Minus
2L 23513712 2L 7100275..7100555 1880..1600 1405 100 Minus
2L 23513712 2L 7107137..7107354 1603..1386 1090 100 Minus
2L 23513712 2L 7107419..7107555 1387..1251 670 99.3 Minus
2L 23513712 2L 7118884..7118925 1255..1214 210 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7155481..7156701 1221..1 6090 99.9 Minus
2L 23513712 2L 7099691..7100207 2394..1878 2585 100 Minus
2L 23513712 2L 7100275..7100555 1880..1600 1405 100 Minus
2L 23513712 2L 7107137..7107354 1603..1386 1090 100 Minus
2L 23513712 2L 7107419..7107555 1387..1251 670 99.2 Minus
2L 23513712 2L 7118884..7118925 1255..1214 210 100 Minus
Blast to na_te.dros performed 2019-03-16 09:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 1175..1245 916..991 125 67.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1499..1609 882..992 123 56.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6802..6900 2286..2390 123 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2840 923..972 116 76.9 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2651..2762 922..1032 115 61.7 Plus

FI06402.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:30:58 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7098763..7099278 1878..2393 99 <- Minus
chr2L 7099349..7099626 1600..1877 98 <- Minus
chr2L 7106237..7106448 1388..1599 100 <- Minus
chr2L 7106515..7106647 1255..1387 100 <- Minus
chr2L 7117981..7118019 1216..1254 100 <- Minus
chr2L 7154562..7155122 655..1215 98 == Minus
chr2L 7155187..7155776 1..590 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:36:05 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..1956 37..1992 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:15:50 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..1956 37..1992 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:05:53 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..1956 37..1992 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:57 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..1956 37..1992 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:04 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..2393 1..2393 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:15:50 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..2393 1..2393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:53 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 995..3387 1..2393 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-23 18:44:21 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 1..2393 1..2393 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:57 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RD 995..3387 1..2393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:58 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7100278..7100555 1600..1877 100 <- Minus
2L 7107141..7107352 1388..1599 100 <- Minus
2L 7107419..7107551 1255..1387 100 <- Minus
2L 7118885..7118923 1216..1254 100 <- Minus
2L 7099692..7100207 1878..2393 100 <- Minus
2L 7155487..7156701 1..1215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:58 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7100278..7100555 1600..1877 100 <- Minus
2L 7107141..7107352 1388..1599 100 <- Minus
2L 7107419..7107551 1255..1387 100 <- Minus
2L 7118885..7118923 1216..1254 100 <- Minus
2L 7099692..7100207 1878..2393 100 <- Minus
2L 7155487..7156701 1..1215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:58 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7100278..7100555 1600..1877 100 <- Minus
2L 7107141..7107352 1388..1599 100 <- Minus
2L 7107419..7107551 1255..1387 100 <- Minus
2L 7118885..7118923 1216..1254 100 <- Minus
2L 7099692..7100207 1878..2393 100 <- Minus
2L 7155487..7156701 1..1215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:53 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7107419..7107551 1255..1387 100 <- Minus
arm_2L 7118885..7118923 1216..1254 100 <- Minus
arm_2L 7100278..7100555 1600..1877 100 <- Minus
arm_2L 7107141..7107352 1388..1599 100 <- Minus
arm_2L 7099692..7100207 1878..2393 100 <- Minus
arm_2L 7155487..7156701 1..1215 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:46:43 Download gff for FI06402.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7099692..7100207 1878..2393 100 <- Minus
2L 7100278..7100555 1600..1877 100 <- Minus
2L 7107141..7107352 1388..1599 100 <- Minus
2L 7107419..7107551 1255..1387 100 <- Minus
2L 7118885..7118923 1216..1254 100 <- Minus
2L 7155487..7156701 1..1215 100   Minus

FI06402.hyp Sequence

Translation from 36 to 1991

> FI06402.hyp
MHWLVLILVPLVWANSSDLKGAPVMTTVAPTGGHRSPHQQQRLQQLQEAQ
QLEAHQQHHHHLRHEQHLRAELEGNHQPPIEDVEKKAFLDPQLPMQQHHL
RHHNRHHASWEQRVFPSLRHQQHRLSIGPSTAKNLMTTEAPTTRHHGLIS
NHSRYFDRDGIFPSWAEPRTTRGPNWRQEVDSSDSDEDSDEDDEDDYDEY
DEDGDTSNGVDEELARQMPRYSLFTQKLPHIDLKDTDYNAYDQSDELDIV
SSSNRNSNKYPSVANPHDKSAGKRNIFDWLFKHDREKEAVKKPHITTTST
TTTTSTTSTVKPTIMRTERPKLQLIDANLKNGGGEEDDSNEDSDSESEEG
FSNEQWNKIEHQHHLRQQKHQKELLAMREKSRNTPLIRNIENEVSAAKTL
EDNDGHDVENIYARNYVAAKVGQKKEDQLGTPEAVIKARRLHAQKQKSER
ALAHAHMNQVLKEATCRIPQKRCQLVQQDPSKIYTPHCTILHRCSEDSGC
CPSRSQICAAKSTHNVELHFFVKSSKHRSVIEKRTFVNHTECHCIERSTY
NEETAMAHYGQSVVRATILSCTCPKSFEKILQDDGQCRCDCSSGNYDCDW
LKRGNEHFAMNDRKCIQQGRCKPPTCEFGLYMDKHGRCPKQHEQPSYNAM
S*

FI06402.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-PD 651 CG34378-PD 1..651 1..651 3544 100 Plus
Pvf3-PF 638 CG34378-PF 1..638 1..651 3453 98 Plus
Pvf3-PA 482 CG34378-PA 160..482 351..651 1467 84.2 Plus
Pvf3-PE 469 CG34378-PE 160..469 351..651 1414 83.9 Plus
Pvf2-PA 405 CG13780-PA 174..382 436..640 262 26.7 Plus

FI06402.pep Sequence

Translation from 36 to 1991

> FI06402.pep
MHWLVLILVPLVWANSSDLKGAPVMTTVAPTGGHRSPHQQQRLQQLQEAQ
QLEAHQQHHHHLRHEQHLRAELEGNHQPPIEDVEKKAFLDPQLPMQQHHL
RHHNRHHASWEQRVFPSLRHQQHRLSIGPSTAKNLMTTEAPTTRHHGLIS
NHSRYFDRDGIFPSWAEPRTTRGPNWRQEVDSSDSDEDSDEDDEDDYDEY
DEDGDTSNGVDEELARQMPRYSLFTQKLPHIDLKDTDYNAYDQSDELDIV
SSSNRNSNKYPSVANPHDKSAGKRNIFDWLFKHDREKEAVKKPHITTTST
TTTTSTTSTVKPTIMRTERPKLQLIDANLKNGGGEEDDSNEDSDSESEEG
FSNEQWNKIEHQHHLRQQKHQKELLAMREKSRNTPLIRNIENEVSAAKTL
EDNDGHDVENIYARNYVAAKVGQKKEDQLGTPEAVIKARRLHAQKQKSER
ALAHAHMNQVLKEATCRIPQKRCQLVQQDPSKIYTPHCTILHRCSEDSGC
CPSRSQICAAKSTHNVELHFFVKSSKHRSVIEKRTFVNHTECHCIERSTY
NEETAMAHYGQSVVRATILSCTCPKSFEKILQDDGQCRCDCSSGNYDCDW
LKRGNEHFAMNDRKCIQQGRCKPPTCEFGLYMDKHGRCPKQHEQPSYNAM
S*

FI06402.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24449-PA 404 GF24449-PA 1..385 1..389 901 59.3 Plus
Dana\GF24460-PA 430 GF24460-PA 180..430 391..651 808 59.2 Plus
Dana\GF24471-PA 365 GF24471-PA 113..347 418..648 344 33.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23551-PA 513 GG23551-PA 5..401 1..397 1515 91.4 Plus
Dere\GG23552-PA 476 GG23552-PA 214..476 391..651 1390 95.4 Plus
Dere\GG23553-PA 399 GG23553-PA 167..383 434..648 261 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11681-PA 313 GH11681-PA 67..313 410..651 666 54.2 Plus
Dgri\GH11682-PA 317 GH11682-PA 76..313 412..645 296 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-PD 651 CG34378-PD 1..651 1..651 3544 100 Plus
Pvf3-PF 638 CG34378-PF 1..638 1..651 3453 98 Plus
Pvf3-PA 482 CG34378-PA 160..482 351..651 1467 84.2 Plus
Pvf3-PE 469 CG34378-PE 160..469 351..651 1414 83.9 Plus
Pvf2-PA 405 CG13780-PA 174..382 436..640 262 26.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17127-PA 438 GI17127-PA 205..435 425..650 753 61.2 Plus
Dmoj\GI17126-PA 552 GI17126-PA 82..403 59..395 468 43 Plus
Dmoj\GI17129-PA 273 GI17129-PA 28..261 412..640 307 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16244-PA 559 GL16244-PA 243..559 340..651 1178 69.2 Plus
Dper\GL16236-PA 547 GL16236-PA 34..433 16..395 868 61.2 Plus
Dper\GL16255-PA 401 GL16255-PA 176..385 424..640 317 34.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12523-PA 521 GA12523-PA 257..521 388..651 1151 78.9 Plus
Dpse\GA12523-PA 521 GA12523-PA 2..263 33..289 682 66.8 Plus
Dpse\GA12522-PA 495 GA12522-PA 270..479 424..640 315 34.3 Plus
Dpse\GA28732-PA 192 GA28732-PA 1..176 452..640 271 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13624-PA 473 GM13624-PA 1..407 1..405 1518 94.3 Plus
Dsec\GM13633-PA 477 GM13633-PA 217..477 391..651 1424 98.1 Plus
Dsec\GM13635-PA 405 GM13635-PA 193..382 455..640 250 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22511-PA 405 GD22511-PA 1..397 1..397 2082 97.2 Plus
Dsim\GD22512-PA 477 GD22512-PA 217..477 391..651 1429 98.9 Plus
Dsim\GD22513-PA 405 GD22513-PA 191..382 453..640 251 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16164-PA 643 GJ16164-PA 75..641 68..651 1138 45.2 Plus
Dvir\GJ16165-PA 375 GJ16165-PA 132..371 402..641 352 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24737-PA 417 GK24737-PA 67..406 62..417 491 46.9 Plus
Dwil\GK24739-PA 132 GK24739-PA 1..132 514..651 425 61.2 Plus
Dwil\GK24738-PA 119 GK24738-PA 1..119 407..525 375 59.7 Plus
Dwil\GK24740-PA 205 GK24740-PA 1..190 452..639 299 36.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18375-PA 400 GE18375-PA 1..397 1..393 1511 91.2 Plus
Dyak\GE18376-PA 628 GE18376-PA 499..628 522..651 740 99.2 Plus
Dyak\GE18376-PA 628 GE18376-PA 222..352 391..521 679 96.2 Plus
Dyak\GE18377-PA 385 GE18377-PA 155..362 434..640 260 28.1 Plus