Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI06408.complete Sequence
1738 bp assembled on 2008-10-23
GenBank Submission: BT050483.1
> FI06408.complete
ATAATTCCAGCAAGATGTTGTGCTTATGAGAACAATGTCAACGCGGATTT
TGAGCCACAGCGCAGTCCGACTTTCATTACTGGCAATGGCAATCCTGGCG
AGCGTTGGACAAGCGACCGACCGATCCGAAGGAAGATCAGTACGCAGGTA
CTCATATGCGGATACCTCGTGGCCCAGGCGGCCGTTCGGCAGCGAGCGAA
GGGACTTGGCGCCTTCGGAGCAGCGATACTTCTCCGATCCGGAACTGCTC
TTCCAGCGGCTGGACGACATGGAGCAGAAATTGGGAATTCCAGAAAAAAT
GGCTGCTGCTGGCAAGGTGAAATCGGAACACTATCTGGTTGGTCCCACGA
ATGTTGCCGCCCAGATGCTCAAAGATAACTTGTACAAATTTCCGATTGAT
GACGGCGCCATTGGACAGGGAATGCACGATGATTGTCTGGGTAAGGAGGA
TGTGGATGATCCCTTCGAGTCCCTGGCCAGGATGAACTTCAATGAGCATT
TGAATGAGCGTAAGTCCGATCGTGAGCTCAAGAGGGTGCTGGGTGGCTAC
TTAAACGACCAGCAGCTGGATGGAAAACCAGCTGTGGCAACAGCCAATTT
GCTGGCCAAGGTCATTAGCTCCAAGGTCGATCAGCCCAGGAAGTCTGGGC
CTTGTCGTGGCACCACGGCTCGATCCCACGGGTTCACCACAAGAAGCCCT
ACGACTCATCGGACGACCCTTAGTACCACAACGCGCAGTCCCACCACTTT
CTGCCTTCCGGAACCCTCATCCGATCCTCCGCTCAAGCCGCTTCCCACAT
CTCCACCAACACCTCGTCCTCCGCCTTCCGCACCTTCGCGTCCACCAACG
ACGCGAAAGCCATCTGCTCAAAGGATTAAGCCCAGTAATAAGTGCCCCAT
ATCGACGAAATCTCAAAAGCTAGGAGGTGCCAAGGTGCTGCTGGAAATCA
TTTTGGCCACCAAGCAGCATGCCCTATCGGTGCTCAAGAATCTCAACTAC
CTGGAATTGGAACTGCTAAGTCACTCAACGGACGACGATGTATCGGAGAA
CCACGTTAAAGAGAAAGAACCAACAACAAAGACGTCTGAACGTATCGAAA
AACCCGAGCCAAGGCCACCATCCAGGGTATTTTCCTTTGGAATTCGACCA
GCGAGCCAAAAAGAGAGCTTGTACGACTTGGCAGTGGCCAAGGAGGAGGA
GTTGAAACTGCAGGATCGGGTGTGGGAGGAGCACCAGCAGCAGATGAAGC
TAAGGAGGCCAATGAAGCCAAAGAGGTTTGAGGTTGCTCCGGCGGCTGCT
GCACGCCTGGAACCTTTTCAGGAGCCTCGAAAGCCACTGAAGTCCATAAA
TTCCATGGAGCCTTTTACTCCTTTGGAACCAGAAACCTCCGACGACAACA
GACGTATCAATCTGGAAGCCTTGAGCGTGGTAGTCAAGCCAATGTCCTCC
TTTCCCAGAAAGGATTCTCTTAGCTCGTCGCCGCGAGCACAAATGAATGC
TGTTCAATTGGAGGGCACAAGCGATGATGAACTGCATCCAGGCAATACAT
TTGAATTGAGACCAAGAAAGAAGAAAAAACACAAGTTGTACGCTATGGAA
AAGCAGACACAGACTAAAAAGCTACCCATTGCAGGAGTTTTTTATTAAGT
CATTTGTATAAATATTAACAGAGTTTTATTGAAACATTTATTCAACACTT
AAATATATTTTAAAAAATAAAAAAAAAAAAAAAAAAAA
FI06408.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13871-RA | 1717 | CG13871-RA | 1..1716 | 1..1716 | 8580 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 16204347..16206062 | 1..1716 | 8505 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:16:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20317323..20319038 | 1..1716 | 8580 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 20318522..20320237 | 1..1716 | 8580 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 17:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 3873..3955 | 1570..1650 | 121 | 65.5 | Plus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1180..1243 | 1653..1718 | 118 | 68.7 | Plus |
FI06408.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:12:10 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 16204347..16206043 | 1..1697 | 99 | <- | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:52:43 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:06 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:11 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:55:34 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:06 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1717 | 1..1718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1717 | 1..1718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-23 18:44:10 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1563 | 86..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:11 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13871-RA | 1..1717 | 1..1718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20317323..20319039 | 1..1718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20317323..20319039 | 1..1718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20317323..20319039 | 1..1718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:01 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16204828..16206544 | 1..1718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:02 Download gff for
FI06408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20318522..20320238 | 1..1718 | 99 | | Plus |
FI06408.pep Sequence
Translation from 25 to 1647
> FI06408.pep
MRTMSTRILSHSAVRLSLLAMAILASVGQATDRSEGRSVRRYSYADTSWP
RRPFGSERRDLAPSEQRYFSDPELLFQRLDDMEQKLGIPEKMAAAGKVKS
EHYLVGPTNVAAQMLKDNLYKFPIDDGAIGQGMHDDCLGKEDVDDPFESL
ARMNFNEHLNERKSDRELKRVLGGYLNDQQLDGKPAVATANLLAKVISSK
VDQPRKSGPCRGTTARSHGFTTRSPTTHRTTLSTTTRSPTTFCLPEPSSD
PPLKPLPTSPPTPRPPPSAPSRPPTTRKPSAQRIKPSNKCPISTKSQKLG
GAKVLLEIILATKQHALSVLKNLNYLELELLSHSTDDDVSENHVKEKEPT
TKTSERIEKPEPRPPSRVFSFGIRPASQKESLYDLAVAKEEELKLQDRVW
EEHQQQMKLRRPMKPKRFEVAPAAAARLEPFQEPRKPLKSINSMEPFTPL
EPETSDDNRRINLEALSVVVKPMSSFPRKDSLSSSPRAQMNAVQLEGTSD
DELHPGNTFELRPRKKKKHKLYAMEKQTQTKKLPIAGVFY*
FI06408.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF12260-PA | 578 | GF12260-PA | 1..517 | 4..475 | 372 | 33.1 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG22025-PA | 525 | GG22025-PA | 1..525 | 4..540 | 1782 | 69.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13871-PA | 520 | CG13871-PA | 1..520 | 21..540 | 2700 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL17633-PA | 507 | GL17633-PA | 1..441 | 4..440 | 398 | 35.7 | Plus |
Dper\GL18797-PA | 189 | GL18797-PA | 50..123 | 369..440 | 152 | 58.1 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA12587-PA | 505 | GA12587-PA | 24..439 | 29..440 | 376 | 36.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22007-PA | 524 | GM22007-PA | 1..524 | 21..540 | 2189 | 86.7 | Plus |
Dsec\GM10409-PA | 128 | GM10409-PA | 1..128 | 413..540 | 580 | 86.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD11507-PA | 508 | GD11507-PA | 1..508 | 21..540 | 2076 | 84.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK17950-PA | 1758 | GK17950-PA | 258..443 | 301..473 | 199 | 34.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE12103-PA | 516 | GE12103-PA | 1..516 | 21..540 | 1744 | 71.6 | Plus |
FI06408.hyp Sequence
Translation from 25 to 1647
> FI06408.hyp
MRTMSTRILSHSAVRLSLLAMAILASVGQATDRSEGRSVRRYSYADTSWP
RRPFGSERRDLAPSEQRYFSDPELLFQRLDDMEQKLGIPEKMAAAGKVKS
EHYLVGPTNVAAQMLKDNLYKFPIDDGAIGQGMHDDCLGKEDVDDPFESL
ARMNFNEHLNERKSDRELKRVLGGYLNDQQLDGKPAVATANLLAKVISSK
VDQPRKSGPCRGTTARSHGFTTRSPTTHRTTLSTTTRSPTTFCLPEPSSD
PPLKPLPTSPPTPRPPPSAPSRPPTTRKPSAQRIKPSNKCPISTKSQKLG
GAKVLLEIILATKQHALSVLKNLNYLELELLSHSTDDDVSENHVKEKEPT
TKTSERIEKPEPRPPSRVFSFGIRPASQKESLYDLAVAKEEELKLQDRVW
EEHQQQMKLRRPMKPKRFEVAPAAAARLEPFQEPRKPLKSINSMEPFTPL
EPETSDDNRRINLEALSVVVKPMSSFPRKDSLSSSPRAQMNAVQLEGTSD
DELHPGNTFELRPRKKKKHKLYAMEKQTQTKKLPIAGVFY*
FI06408.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13871-PA | 520 | CG13871-PA | 1..520 | 21..540 | 2700 | 100 | Plus |