Clone FI06408 Report

Search the DGRC for FI06408

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:64
Well:8
Vector:pOT2
Associated Gene/TranscriptCG13871-RA
Protein status:FI06408.pep: gold
Sequenced Size:1738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13871 2008-12-18 5.12 accounting

Clone Sequence Records

FI06408.complete Sequence

1738 bp assembled on 2008-10-23

GenBank Submission: BT050483.1

> FI06408.complete
ATAATTCCAGCAAGATGTTGTGCTTATGAGAACAATGTCAACGCGGATTT
TGAGCCACAGCGCAGTCCGACTTTCATTACTGGCAATGGCAATCCTGGCG
AGCGTTGGACAAGCGACCGACCGATCCGAAGGAAGATCAGTACGCAGGTA
CTCATATGCGGATACCTCGTGGCCCAGGCGGCCGTTCGGCAGCGAGCGAA
GGGACTTGGCGCCTTCGGAGCAGCGATACTTCTCCGATCCGGAACTGCTC
TTCCAGCGGCTGGACGACATGGAGCAGAAATTGGGAATTCCAGAAAAAAT
GGCTGCTGCTGGCAAGGTGAAATCGGAACACTATCTGGTTGGTCCCACGA
ATGTTGCCGCCCAGATGCTCAAAGATAACTTGTACAAATTTCCGATTGAT
GACGGCGCCATTGGACAGGGAATGCACGATGATTGTCTGGGTAAGGAGGA
TGTGGATGATCCCTTCGAGTCCCTGGCCAGGATGAACTTCAATGAGCATT
TGAATGAGCGTAAGTCCGATCGTGAGCTCAAGAGGGTGCTGGGTGGCTAC
TTAAACGACCAGCAGCTGGATGGAAAACCAGCTGTGGCAACAGCCAATTT
GCTGGCCAAGGTCATTAGCTCCAAGGTCGATCAGCCCAGGAAGTCTGGGC
CTTGTCGTGGCACCACGGCTCGATCCCACGGGTTCACCACAAGAAGCCCT
ACGACTCATCGGACGACCCTTAGTACCACAACGCGCAGTCCCACCACTTT
CTGCCTTCCGGAACCCTCATCCGATCCTCCGCTCAAGCCGCTTCCCACAT
CTCCACCAACACCTCGTCCTCCGCCTTCCGCACCTTCGCGTCCACCAACG
ACGCGAAAGCCATCTGCTCAAAGGATTAAGCCCAGTAATAAGTGCCCCAT
ATCGACGAAATCTCAAAAGCTAGGAGGTGCCAAGGTGCTGCTGGAAATCA
TTTTGGCCACCAAGCAGCATGCCCTATCGGTGCTCAAGAATCTCAACTAC
CTGGAATTGGAACTGCTAAGTCACTCAACGGACGACGATGTATCGGAGAA
CCACGTTAAAGAGAAAGAACCAACAACAAAGACGTCTGAACGTATCGAAA
AACCCGAGCCAAGGCCACCATCCAGGGTATTTTCCTTTGGAATTCGACCA
GCGAGCCAAAAAGAGAGCTTGTACGACTTGGCAGTGGCCAAGGAGGAGGA
GTTGAAACTGCAGGATCGGGTGTGGGAGGAGCACCAGCAGCAGATGAAGC
TAAGGAGGCCAATGAAGCCAAAGAGGTTTGAGGTTGCTCCGGCGGCTGCT
GCACGCCTGGAACCTTTTCAGGAGCCTCGAAAGCCACTGAAGTCCATAAA
TTCCATGGAGCCTTTTACTCCTTTGGAACCAGAAACCTCCGACGACAACA
GACGTATCAATCTGGAAGCCTTGAGCGTGGTAGTCAAGCCAATGTCCTCC
TTTCCCAGAAAGGATTCTCTTAGCTCGTCGCCGCGAGCACAAATGAATGC
TGTTCAATTGGAGGGCACAAGCGATGATGAACTGCATCCAGGCAATACAT
TTGAATTGAGACCAAGAAAGAAGAAAAAACACAAGTTGTACGCTATGGAA
AAGCAGACACAGACTAAAAAGCTACCCATTGCAGGAGTTTTTTATTAAGT
CATTTGTATAAATATTAACAGAGTTTTATTGAAACATTTATTCAACACTT
AAATATATTTTAAAAAATAAAAAAAAAAAAAAAAAAAA

FI06408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-RA 1717 CG13871-RA 1..1716 1..1716 8580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16204347..16206062 1..1716 8505 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:16:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20317323..20319038 1..1716 8580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20318522..20320237 1..1716 8580 100 Plus
Blast to na_te.dros performed 2019-03-16 17:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 3873..3955 1570..1650 121 65.5 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1180..1243 1653..1718 118 68.7 Plus

FI06408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:12:10 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16204347..16206043 1..1697 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:52:43 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:06 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:11 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:55:34 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:06 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1717 1..1718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1717 1..1718 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-23 18:44:10 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1563 86..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:11 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 1..1717 1..1718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20317323..20319039 1..1718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20317323..20319039 1..1718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:12:10 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20317323..20319039 1..1718 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:01 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16204828..16206544 1..1718 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:02 Download gff for FI06408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20318522..20320238 1..1718 99   Plus

FI06408.pep Sequence

Translation from 25 to 1647

> FI06408.pep
MRTMSTRILSHSAVRLSLLAMAILASVGQATDRSEGRSVRRYSYADTSWP
RRPFGSERRDLAPSEQRYFSDPELLFQRLDDMEQKLGIPEKMAAAGKVKS
EHYLVGPTNVAAQMLKDNLYKFPIDDGAIGQGMHDDCLGKEDVDDPFESL
ARMNFNEHLNERKSDRELKRVLGGYLNDQQLDGKPAVATANLLAKVISSK
VDQPRKSGPCRGTTARSHGFTTRSPTTHRTTLSTTTRSPTTFCLPEPSSD
PPLKPLPTSPPTPRPPPSAPSRPPTTRKPSAQRIKPSNKCPISTKSQKLG
GAKVLLEIILATKQHALSVLKNLNYLELELLSHSTDDDVSENHVKEKEPT
TKTSERIEKPEPRPPSRVFSFGIRPASQKESLYDLAVAKEEELKLQDRVW
EEHQQQMKLRRPMKPKRFEVAPAAAARLEPFQEPRKPLKSINSMEPFTPL
EPETSDDNRRINLEALSVVVKPMSSFPRKDSLSSSPRAQMNAVQLEGTSD
DELHPGNTFELRPRKKKKHKLYAMEKQTQTKKLPIAGVFY*

FI06408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12260-PA 578 GF12260-PA 1..517 4..475 372 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22025-PA 525 GG22025-PA 1..525 4..540 1782 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-PA 520 CG13871-PA 1..520 21..540 2700 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17633-PA 507 GL17633-PA 1..441 4..440 398 35.7 Plus
Dper\GL18797-PA 189 GL18797-PA 50..123 369..440 152 58.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12587-PA 505 GA12587-PA 24..439 29..440 376 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22007-PA 524 GM22007-PA 1..524 21..540 2189 86.7 Plus
Dsec\GM10409-PA 128 GM10409-PA 1..128 413..540 580 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11507-PA 508 GD11507-PA 1..508 21..540 2076 84.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17950-PA 1758 GK17950-PA 258..443 301..473 199 34.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12103-PA 516 GE12103-PA 1..516 21..540 1744 71.6 Plus

FI06408.hyp Sequence

Translation from 25 to 1647

> FI06408.hyp
MRTMSTRILSHSAVRLSLLAMAILASVGQATDRSEGRSVRRYSYADTSWP
RRPFGSERRDLAPSEQRYFSDPELLFQRLDDMEQKLGIPEKMAAAGKVKS
EHYLVGPTNVAAQMLKDNLYKFPIDDGAIGQGMHDDCLGKEDVDDPFESL
ARMNFNEHLNERKSDRELKRVLGGYLNDQQLDGKPAVATANLLAKVISSK
VDQPRKSGPCRGTTARSHGFTTRSPTTHRTTLSTTTRSPTTFCLPEPSSD
PPLKPLPTSPPTPRPPPSAPSRPPTTRKPSAQRIKPSNKCPISTKSQKLG
GAKVLLEIILATKQHALSVLKNLNYLELELLSHSTDDDVSENHVKEKEPT
TKTSERIEKPEPRPPSRVFSFGIRPASQKESLYDLAVAKEEELKLQDRVW
EEHQQQMKLRRPMKPKRFEVAPAAAARLEPFQEPRKPLKSINSMEPFTPL
EPETSDDNRRINLEALSVVVKPMSSFPRKDSLSSSPRAQMNAVQLEGTSD
DELHPGNTFELRPRKKKKHKLYAMEKQTQTKKLPIAGVFY*

FI06408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-PA 520 CG13871-PA 1..520 21..540 2700 100 Plus