Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI06410.complete Sequence
1799 bp assembled on 2008-10-31
GenBank Submission: BT050485.1
> FI06410.complete
CTCGTGCTTGACGCACGTGTTTTCTTCTTTCCGAACTTTTCAGTTCAGAG
AATTGATTTCGATAAAACGCGATGTCAAAGCGCTGCTGGAACCGCAACCA
GCGCTCGGTGTCCCTGCCCAGGAGCGAATTCGTCGAAATAAACCCCATGA
TGCCCGGCAGGAGCACCGCAGCTGAAGGCGCACGCGGGAGAGCATCATCC
GGACCTCGGATGACCGTGGAGACCCTGTTCCATACTTCTCACTCGGCGAA
GAAGGAGCGTCCACAGCAGGGTGCAAAACCCATGGAAAACCGAGTTTTGA
AGGAAAGCTCCACGTCTAAGAATTCGCGTGAGATGCCTTCTCTGCTACTC
TCCACCAAGGGCAGGCCAGATGGCACTTGGAATAATATGAGAGCCAAGGA
AAACAAGCAGCATCGCAAAGAAGGGAGTCGCCACCTGGCTGCAACTTCCA
CGATGCCCAAGATGGATGAGCTTGGACCCGACTGGCGAAAACCTTGGCCG
ATCGGCGGTTTTTCTCGGAATAATCGTAGTAGCCCTCAGATGTTCAGTAC
AGTTCCTTCGAAAAGTTCTGTTAACATTTCAAGAGACAACAACAATTATC
CCGATTTAAAAATAGAAGACACTGGGAAAAAGAGCCACACAGTCACAGGA
AAGGCACCGAACACGCGTGCAGAAGATCAAAGGTCAGGAATGGTGGCCCA
TCTAAGCGGTCTAAATAGCAAGACTAAGCACACGAGGCTGATGAGTACTT
CCAAGCGCTGCAAAGCAGGTTCGGAAGATTCTGTTTACCATCAGACCCTG
AATGATGTCATCTCCCAGTGGGATTGCCAGCCGTCGACCAGTAAAAGTAA
TCCATGCCAGATTCCGAAGATTCCGAATCTGCCGTCCGGATGGACAGCTT
CGCCGAGCAAAGACGCGGACTTCCCTTTCATGGCGGATCTGGAAAATAGG
ATGGGGGTCGAAAGTCTGATGCCCGAGCTGCTGACTCCATCGCGCACCTC
CCAGCCGCTGACAAAGAATTCTCCGCCTTGGGACTTGTATGCCTTGATGG
GCAACGACGACAAATTTCCGCTTAGCATCTGCACCGATGAGAGATCCAAA
AATGATCCATTGTGGGGCTCCACTTGCATTAACTGGGAAGAAAGCAGCGG
CAGGAACTTGGACTTGAACCACGTCTGCGAGAGGGCCTTGGGAAAATTCC
CAGGCCCATCTGCTACTCCGGGAAACGTGGAAGATTGGCAGGCCATCGAG
ACTATTTGCATGCGTTTGAGGGGCTTCGATATGCCGGGCGACCTGGGTGT
TCTGATGGAACCTCCATCCTTGGATGATGTACTCGAGGTTATCGGGGACT
TGGAGGCGGAGAACAAGAAGGATCTGAAGAATTAGTTGCATATATGTGTA
AATCATGCTGAGTATAACTTCAGCCAAAGGAAAAATGACACTAGAAATAC
CAAAACTTTTTTTTATAAATATTTTTCAAAATTTTTCGAAACGAGACACG
TGATTATCCGCCGATCTATTTAATATTTGAGAAAAATCTGTATGTAAGAA
CCTGTGCATTTCTATTCCCCAAAACCAATAGTGCTTCCATACAACTGATA
CAAAAAACTGGTGAATTCTGCCAAGTTAGGCAAATATTTTATACCATTTC
ACTGACTCCCAGCATTTTTCCCCAGCTTGTAACAATAAATACTGTGTGCA
GCTGCAGCAACAATAGCTGGGAAAAACAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
FI06410.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13577-RB | 1961 | CG13577-RB | 102..1830 | 1..1728 | 8605 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 20153403..20155057 | 1727..74 | 8150 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 20155116..20155186 | 74..4 | 355 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:16:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24267376..24269031 | 1728..74 | 8230 | 99.9 | Minus |
2R | 25286936 | 2R | 24269090..24269163 | 74..1 | 370 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 24268575..24270230 | 1728..74 | 8240 | 99.9 | Minus |
2R | 25260384 | 2R | 24270289..24270362 | 74..1 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 13:38:05 has no hits.
FI06410.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:38:43 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 20153403..20155056 | 75..1727 | 97 | <- | Minus |
chr2R | 20155116..20155189 | 1..74 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:52:45 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1314 | 72..1385 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:17:49 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1314 | 72..1385 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:49:58 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1314 | 72..1385 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:11 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1314 | 72..1385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:57:56 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1728 | 1..1727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:17:49 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 1..1728 | 1..1727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:49:58 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 17..1744 | 1..1727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-31 09:52:10 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RA | 1..1279 | 147..1425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:11 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13577-RB | 17..1744 | 1..1727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:43 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24267377..24269030 | 75..1727 | 99 | <- | Minus |
2R | 24269090..24269163 | 1..74 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:43 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24267377..24269030 | 75..1727 | 99 | <- | Minus |
2R | 24269090..24269163 | 1..74 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:43 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24267377..24269030 | 75..1727 | 99 | <- | Minus |
2R | 24269090..24269163 | 1..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:49:58 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20154900..20156553 | 75..1727 | 99 | <- | Minus |
arm_2R | 20156613..20156686 | 1..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:48:58 Download gff for
FI06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24268594..24270247 | 75..1727 | 99 | <- | Minus |
2R | 24270307..24270380 | 1..74 | 100 | | Minus |
FI06410.pep Sequence
Translation from 71 to 1384
> FI06410.pep
MSKRCWNRNQRSVSLPRSEFVEINPMMPGRSTAAEGARGRASSGPRMTVE
TLFHTSHSAKKERPQQGAKPMENRVLKESSTSKNSREMPSLLLSTKGRPD
GTWNNMRAKENKQHRKEGSRHLAATSTMPKMDELGPDWRKPWPIGGFSRN
NRSSPQMFSTVPSKSSVNISRDNNNYPDLKIEDTGKKSHTVTGKAPNTRA
EDQRSGMVAHLSGLNSKTKHTRLMSTSKRCKAGSEDSVYHQTLNDVISQW
DCQPSTSKSNPCQIPKIPNLPSGWTASPSKDADFPFMADLENRMGVESLM
PELLTPSRTSQPLTKNSPPWDLYALMGNDDKFPLSICTDERSKNDPLWGS
TCINWEESSGRNLDLNHVCERALGKFPGPSATPGNVEDWQAIETICMRLR
GFDMPGDLGVLMEPPSLDDVLEVIGDLEAENKKDLKN*
FI06410.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19942-PA | 492 | GG19942-PA | 33..492 | 2..437 | 1079 | 54.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13577-PB | 437 | CG13577-PB | 1..437 | 1..437 | 2341 | 100 | Plus |
CG13577-PC | 231 | CG13577-PC | 1..231 | 207..437 | 1252 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11844-PA | 436 | GM11844-PA | 1..436 | 1..437 | 1617 | 72.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11471-PA | 478 | GE11471-PA | 29..478 | 1..437 | 1012 | 50.2 | Plus |
FI06410.hyp Sequence
Translation from 71 to 1384
> FI06410.hyp
MSKRCWNRNQRSVSLPRSEFVEINPMMPGRSTAAEGARGRASSGPRMTVE
TLFHTSHSAKKERPQQGAKPMENRVLKESSTSKNSREMPSLLLSTKGRPD
GTWNNMRAKENKQHRKEGSRHLAATSTMPKMDELGPDWRKPWPIGGFSRN
NRSSPQMFSTVPSKSSVNISRDNNNYPDLKIEDTGKKSHTVTGKAPNTRA
EDQRSGMVAHLSGLNSKTKHTRLMSTSKRCKAGSEDSVYHQTLNDVISQW
DCQPSTSKSNPCQIPKIPNLPSGWTASPSKDADFPFMADLENRMGVESLM
PELLTPSRTSQPLTKNSPPWDLYALMGNDDKFPLSICTDERSKNDPLWGS
TCINWEESSGRNLDLNHVCERALGKFPGPSATPGNVEDWQAIETICMRLR
GFDMPGDLGVLMEPPSLDDVLEVIGDLEAENKKDLKN*
FI06410.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13577-PB | 437 | CG13577-PB | 1..437 | 1..437 | 2341 | 100 | Plus |
CG13577-PC | 231 | CG13577-PC | 1..231 | 207..437 | 1252 | 100 | Plus |