Clone FI06493 Report

Search the DGRC for FI06493

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:64
Well:93
Vector:pOT2
Associated Gene/Transcriptholn1-RA
Protein status:FI06493.pep: gold
Sequenced Size:1212

Clone Sequence Records

FI06493.complete Sequence

1212 bp assembled on 2009-06-09

GenBank Submission: BT088782.1

> FI06493.complete
CTTAAAAATATTGACATTGCATTTAGTTTTGTCTTGAGTTCTTGATAAAA
TGGCGAGCAAAAGAAAGCACCAAGCATCCCAGAAAGTGAAAGAGGAATCC
TTCAAGAAACACACGCTTGACTCCGATGAAGAGGATTCTGACGACTACGA
AAGGGAATACCTCAATGATAGCGACATTGAGGGCGGCGAGGAGGGCGTGG
CAAAAGTGGAAGACGATGTGAAGGTAACACCCTTCAATATGAAGGAAGAA
CTGGAGGAGGGACACTTCGACAAAGATGGTCACTACCATTGGAACAAGGA
GACGGAAGCAAAGGACAATTGGTTGGACAACATAGACTGGGTTAAAATTG
GCACACAGAAGAACGCCTTCGACCCGGCAAAAGATGAAGAAAACTCTTCC
GATGAGGAGAAGAACGAACCCGTGGGCAAGGCCTTTAACTTGTCCATGAA
CCTCATGAAAATGGTCGAGTTTATGAAACCGGGAGAGACTGTCAAGATGA
CCCTGCAGCGTCTGGGTAAGCAGCGCCCCGTCCTAACAACCCTTCAGAGG
ATTAAGCAGAAAAAGGCCGGCATCGTTGACCCAAAGACACAGGAAATCTC
TCAGCTCACCGAGCTGGCCAACGAGATTCTCTCGAAGACGGGCAATATGG
ATATATATCAGGATACGTACGAAAGCATCAAGGCCAAGATCGCCGATTTG
CCAGGAACGAGCAAACCTAAAGTAGCCGATGATATTGATATGTATGCAGA
TGATTTCGAAACGAAAGAATTGGAGCGCTCTAAGACATCGTCGAGTGATA
GCTCCAAACCAACGACGACTACCTCAGAGGTGACCTGGGAGTTTAAATGG
TCGCAGGATGAGACTGATATCCAGGGACCCTTTTCCACGGAGAAAATGTT
GAAATGGTCCCAGGAGAACTACTTTAAAAACGGAGTCTATGTGCGAAAGT
GCGGCGAAAACACAAATTTCTATACAAGCAACCGCATAGATTTCGATTTG
TACTTGTAGGCCTTAGTTAACAAATGTTAAATTCTTTGGGTTTTAACATG
TTTTCTGCAAATACTTTGTTCTATAATTGTATACTGTATACTTTACAAGA
GGTTTCAATTAGTTTGCACTTGGTTTGGACTTAAAATAAAATTCATATTC
ATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

FI06493.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5198.a 1392 CG5198.a 71..1227 1..1157 5785 100 Plus
CG5198-RA 1236 CG5198-RA 71..1227 1..1157 5785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10435342..10436151 347..1156 4050 100 Plus
chr2L 23010047 chr2L 10435082..10435276 152..346 975 100 Plus
chr2L 23010047 chr2L 10434872..10435029 1..158 760 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:17:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10436507..10437317 347..1157 4055 100 Plus
2L 23513712 2L 10436247..10436441 152..346 975 100 Plus
2L 23513712 2L 10436037..10436194 1..158 775 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10436507..10437317 347..1157 4055 100 Plus
2L 23513712 2L 10436247..10436441 152..346 975 100 Plus
2L 23513712 2L 10436037..10436194 1..158 775 99.3 Plus
Blast to na_te.dros performed 2019-03-16 15:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6024..6133 1156..1050 120 58.2 Minus

FI06493.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:28 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10434872..10435024 1..153 99 -> Plus
chr2L 10435084..10435276 154..346 100 -> Plus
chr2L 10435342..10436151 347..1156 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:08 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG5198-RA 1..960 50..1009 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:30 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG5198-RA 1..960 50..1009 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:35 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 1..960 50..1009 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:06 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 1..960 50..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-09 09:54:20 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG5198-RA 47..1202 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:30 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
CG5198-RA 47..1202 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:35 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 43..1198 1..1156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:06 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 43..1198 1..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:28 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10436037..10436189 1..153 100 -> Plus
2L 10436249..10436441 154..346 100 -> Plus
2L 10436507..10437316 347..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:28 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10436037..10436189 1..153 100 -> Plus
2L 10436249..10436441 154..346 100 -> Plus
2L 10436507..10437316 347..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:28 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10436037..10436189 1..153 100 -> Plus
2L 10436249..10436441 154..346 100 -> Plus
2L 10436507..10437316 347..1156 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:35 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10436037..10436189 1..153 100 -> Plus
arm_2L 10436249..10436441 154..346 100 -> Plus
arm_2L 10436507..10437316 347..1156 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:22:57 Download gff for FI06493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10436507..10437316 347..1156 100   Plus
2L 10436037..10436189 1..153 100 -> Plus
2L 10436249..10436441 154..346 100 -> Plus

FI06493.pep Sequence

Translation from 49 to 1008

> FI06493.pep
MASKRKHQASQKVKEESFKKHTLDSDEEDSDDYEREYLNDSDIEGGEEGV
AKVEDDVKVTPFNMKEELEEGHFDKDGHYHWNKETEAKDNWLDNIDWVKI
GTQKNAFDPAKDEENSSDEEKNEPVGKAFNLSMNLMKMVEFMKPGETVKM
TLQRLGKQRPVLTTLQRIKQKKAGIVDPKTQEISQLTELANEILSKTGNM
DIYQDTYESIKAKIADLPGTSKPKVADDIDMYADDFETKELERSKTSSSD
SSKPTTTTSEVTWEFKWSQDETDIQGPFSTEKMLKWSQENYFKNGVYVRK
CGENTNFYTSNRIDFDLYL*

FI06493.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15791-PA 320 GF15791-PA 1..320 1..319 1341 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10134-PA 320 GG10134-PA 1..320 1..319 1526 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13298-PA 311 GH13298-PA 1..311 1..319 1049 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
holn1-PA 319 CG5198-PA 1..319 1..319 1682 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18162-PA 312 GI18162-PA 1..312 1..319 1059 67.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19140-PA 316 GL19140-PA 1..316 1..319 1091 64.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18730-PA 314 GA18730-PA 1..314 1..319 1096 65 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18415-PA 318 GM18415-PA 1..318 1..319 1628 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23703-PA 318 GD23703-PA 1..318 1..319 1628 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14592-PA 312 GJ14592-PA 1..312 1..319 1047 67.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15260-PA 326 GK15260-PA 1..326 1..319 1053 64.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18946-PA 320 GE18946-PA 1..320 1..319 1538 93.8 Plus

FI06493.hyp Sequence

Translation from 49 to 1008

> FI06493.hyp
MASKRKHQASQKVKEESFKKHTLDSDEEDSDDYEREYLNDSDIEGGEEGV
AKVEDDVKVTPFNMKEELEEGHFDKDGHYHWNKETEAKDNWLDNIDWVKI
GTQKNAFDPAKDEENSSDEEKNEPVGKAFNLSMNLMKMVEFMKPGETVKM
TLQRLGKQRPVLTTLQRIKQKKAGIVDPKTQEISQLTELANEILSKTGNM
DIYQDTYESIKAKIADLPGTSKPKVADDIDMYADDFETKELERSKTSSSD
SSKPTTTTSEVTWEFKWSQDETDIQGPFSTEKMLKWSQENYFKNGVYVRK
CGENTNFYTSNRIDFDLYL*

FI06493.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
holn1-PA 319 CG5198-PA 1..319 1..319 1682 100 Plus