Clone FI06540 Report

Search the DGRC for FI06540

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:65
Well:40
Vector:pOT2
Associated Gene/TranscriptCG31950-RA
Protein status:FI06540.pep: gold
Sequenced Size:529

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31950 2008-08-15 Release 5.9 accounting
CG31950 2008-12-18 5.12 accounting

Clone Sequence Records

FI06540.complete Sequence

529 bp assembled on 2008-07-31

GenBank Submission: BT044300.1

> FI06540.complete
GTGTAAACACCAAAAAAGCTGAGAATTTCTTGCATTTATTTGTTTAAATT
GAGCAAAGAGGACATAACCATGACAGAACTGAGCATCACTGGCCAACAGG
TGATGCCTCCGCCCGCTTGTACACCCCCGGAGCCCTTCCGCATCACAACG
AACGCCCCGCACCAGATGAACGATGCCAGTTTGACGCCGGGACGCAGGAA
GCTCCAGAAGTGGCTGGGTCGAGTTCTGCGGATCGTGATTACGGACGGAC
GCGTGCTGGTGGGATTCTTCAACTGCACGGACCGCGACGCCAACATCGTG
CTGTCCATGTGCGCCGAGTACTTGGTGGAGGGCCAGGAGCCGCGCCTGCT
GGGCAACGTCATGGTTCCCGGCCAGCACATAGTCTCCCTAAGCATCGACG
AGCCGGATCCGCAGTCCAGCCTGCTGGTGCAATAGTGCGCATGTGTGCAT
GTGTTTTGAATAAAATAAACTAGATATTTGAAATTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI06540.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31950-RA 482 CG31950-RA 5..482 1..486 2150 96.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2878172..2878657 1..486 2370 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:17:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2878524..2879003 1..488 2150 96.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2878524..2878969 1..446 2095 97.9 Plus
2L 23513712 2L 2878958..2879003 443..488 215 97.8 Plus
Blast to na_te.dros performed on 2019-03-16 10:29:10 has no hits.

FI06540.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:13 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2878172..2878657 1..486 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:54:20 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:15 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:28 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:26 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:09 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:49:45 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:15 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 5..482 1..486 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:28 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 5..482 1..486 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-31 11:06:58 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 1..366 70..435 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:09 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
CG31950-RA 5..482 1..486 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:13 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2878524..2879001 1..486 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:13 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2878524..2879001 1..486 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:13 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2878524..2879001 1..486 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:28 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2878524..2879001 1..486 96   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:02 Download gff for FI06540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2878524..2879001 1..486 96   Plus

FI06540.hyp Sequence

Translation from 69 to 434

> FI06540.hyp
MTELSITGQQVMPPPACTPPEPFRITTNAPHQMNDASLTPGRRKLQKWLG
RVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQEPRLLGNVMVP
GQHIVSLSIDEPDPQSSLLVQ*

FI06540.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31950-PB 121 CG31950-PB 1..121 1..121 634 100 Plus
CG31950-PA 121 CG31950-PA 1..121 1..121 634 100 Plus

FI06540.pep Sequence

Translation from 69 to 434

> FI06540.pep
MTELSITGQQVMPPPACTPPEPFRITTNAPHQMNDASLTPGRRKLQKWLG
RVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQEPRLLGNVMVP
GQHIVSLSIDEPDPQSSLLVQ*

FI06540.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15217-PA 120 GF15217-PA 1..120 1..121 546 87.6 Plus
Dana\GF21498-PA 122 GF21498-PA 33..116 38..121 210 46.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24897-PA 121 GG24897-PA 1..121 1..121 595 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10685-PA 123 GH10685-PA 1..123 1..118 445 76.6 Plus
Dgri\GH11291-PA 123 GH11291-PA 19..102 23..112 158 35.9 Plus
Dgri\GH17539-PA 123 GH17539-PA 19..102 23..112 157 35.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sbat-PB 121 CG31950-PB 1..121 1..121 634 100 Plus
Sbat-PA 121 CG31950-PA 1..121 1..121 634 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11171-PA 112 GI11171-PA 18..112 23..118 431 87.5 Plus
Dmoj\GI24574-PA 128 GI24574-PA 23..110 25..112 242 48.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26293-PA 131 GL26293-PA 1..110 1..111 479 81.1 Plus
Dper\GL25656-PA 146 GL25656-PA 14..94 27..109 214 49.4 Plus
Dper\GL16608-PA 94 GL16608-PA 19..90 38..109 184 54.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16583-PA 131 GA16583-PA 1..110 1..111 477 81.1 Plus
Dpse\GA25374-PA 146 GA25374-PA 6..94 21..109 213 48.4 Plus
Dpse\GA22306-PA 94 GA22306-PA 18..90 37..109 188 52.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18377-PA 121 GM18377-PA 1..121 1..121 621 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23192-PA 121 GD23192-PA 1..121 1..121 626 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18323-PA 117 GJ18323-PA 1..115 1..116 461 81.9 Plus
Dvir\GJ16334-PA 134 GJ16334-PA 23..110 25..112 236 46.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19354-PA 126 GK19354-PA 1..124 1..119 478 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18190-PA 121 GE18190-PA 1..121 1..121 612 95 Plus