Clone FI06688 Report

Search the DGRC for FI06688

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:66
Well:88
Vector:pOT2
Associated Gene/TranscriptSc2-RA
Protein status:FI06688.pep: gold
Sequenced Size:1091

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Sc2 2008-12-18 5.12 accounting

Clone Sequence Records

FI06688.complete Sequence

1091 bp assembled on 2008-10-24

GenBank Submission: BT050505.1

> FI06688.complete
CACCGAAAGCAAAATGGAGCTGGAGATTTTGAACGCGAAGAACAGCAAGC
CGTACGGCAAGGTGAAGGTGCCCTCCGGCGCCACGCCCATCGGCGATCTG
CGCGCCCTAATCCACAAGACCCTGAAGCAGACCCCACACGCGAATCGCCA
GTCGCTGCGCCTGGAACTGAAGGGCAAAAGCCTGAAGGATACGGACACAT
TGGAATCCCTGTCGCTGCGTTCCGGCGACAAGATCTATGTGAAGGATCTG
GGTCCCCAGATTGGCTGGAAGACCGTTTTCCTGGCCGAGTACGCCGGCCC
ACTGATTGTATACTTGATTTTCTACTTCCGACCGGAGTTGGTGTACGGCA
AAGCTGCCAGTCTGCCGATTTCCCTAACCACCCACATTGCCGCCGGCTGC
TATACGGTCCACTATGTGAAGCGTCTGCTGGAGACGATTTTCGTGCACCG
CTTCTCGCACGCCACCATGCCGCTGAGGAATCTCTTCAAGAACTGCACAT
ACTACTGGGGATTCACCGCCTATGTGTCCTACCACGTGAACCATCCGCAG
TTCACCTCGCCCTGCATGTGCACCGTTTGGGGAGCTCTTGGGGCATTCGC
TCTCTGCGAACTAGGAAACTTTTCGGTGCACATTGCCCTGCGCAACCTGC
GTCCGCCGGGAACAAAAGTGCGCAAGATTCCGGTGGCCGATGGAAATCCC
CTCACCAAGCTGTTCGACTTGGTTTCTTGCCCCAACTACACCTATGAGAT
CGGTGCCTGGGTTTCATTCTCTGTGCTGACTTCTTGCCTGGCTGCCTATC
TGTTCGCCTTTGCCGGAGCCTTCCAGATGACCATTTGGGCCTTGGCCAAG
CATCGCAACTACAAAAAGGAGTTTAAGGACTACCCTCGCCAGCGCCGCTC
CATCTTCCCCTTCGTCCTGTAGGTTGGATGTGGGTGTCCCCATGACGCAT
TCGCTGTATTACCTATTCCACATTATACATTTACACATTTGGCTAGCGTT
TAACAGGGTAGTTGTCTAGTGAACTTTGTGCTTTCGTTGATTTAAAGCAA
ATACAAATTGGAGAAGCGTAAAAAAAAAAAAAAAAAAAAAA

FI06688.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Sc2.b 1205 Sc2.b 133..1202 1..1070 5260 99.4 Plus
Sc2.c 1205 Sc2.c 133..1202 1..1070 5260 99.4 Plus
Sc2.a 1205 Sc2.a 133..1202 1..1070 5260 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3902984..3903367 1..384 1860 99 Plus
chr3L 24539361 chr3L 3904140..3904491 718..1069 1760 100 Plus
chr3L 24539361 chr3L 3903525..3903741 385..601 1055 99.1 Plus
chr3L 24539361 chr3L 3903962..3904077 602..717 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:17:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3903528..3903911 1..384 1860 99 Plus
3L 28110227 3L 3904684..3905036 718..1070 1735 99.4 Plus
3L 28110227 3L 3904069..3904285 385..601 1085 100 Plus
3L 28110227 3L 3904506..3904621 602..717 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3903528..3903911 1..384 1860 98.9 Plus
3L 28103327 3L 3904684..3905036 718..1070 1735 99.4 Plus
3L 28103327 3L 3904069..3904285 385..601 1085 100 Plus
3L 28103327 3L 3904506..3904621 602..717 580 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:22:32 has no hits.

FI06688.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:23:39 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3902984..3903367 1..384 98 -> Plus
chr3L 3903525..3903741 385..601 99 -> Plus
chr3L 3903962..3904077 602..717 100 -> Plus
chr3L 3904140..3904491 718..1069 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:54:36 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 1..909 14..922 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:32 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 1..909 14..922 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:35:13 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 1..909 14..922 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:31:10 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 1..909 14..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:56:06 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 18..1084 1..1067 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:32 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 18..1084 1..1067 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:35:13 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 37..1105 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-24 12:55:36 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 18..1084 1..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:10 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
Sc2-RA 37..1105 1..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:39 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3903528..3903911 1..384 98 -> Plus
3L 3904069..3904285 385..601 100 -> Plus
3L 3904506..3904621 602..717 100 -> Plus
3L 3904684..3905035 718..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:39 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3903528..3903911 1..384 98 -> Plus
3L 3904069..3904285 385..601 100 -> Plus
3L 3904506..3904621 602..717 100 -> Plus
3L 3904684..3905035 718..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:39 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3903528..3903911 1..384 98 -> Plus
3L 3904069..3904285 385..601 100 -> Plus
3L 3904506..3904621 602..717 100 -> Plus
3L 3904684..3905035 718..1069 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:35:13 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3904069..3904285 385..601 100 -> Plus
arm_3L 3904506..3904621 602..717 100 -> Plus
arm_3L 3903528..3903911 1..384 98 -> Plus
arm_3L 3904684..3905035 718..1069 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:31 Download gff for FI06688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3903528..3903911 1..384 98 -> Plus
3L 3904069..3904285 385..601 100 -> Plus
3L 3904506..3904621 602..717 100 -> Plus
3L 3904684..3905035 718..1069 99   Plus

FI06688.pep Sequence

Translation from 1 to 921

> FI06688.pep
TESKMELEILNAKNSKPYGKVKVPSGATPIGDLRALIHKTLKQTPHANRQ
SLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLGPQIGWKTVFLAEYAGP
LIVYLIFYFRPELVYGKAASLPISLTTHIAAGCYTVHYVKRLLETIFVHR
FSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFA
LCELGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEI
GAWVSFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRS
IFPFVL*

FI06688.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24232-PA 302 GF24232-PA 1..302 5..306 1554 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15168-PA 302 GG15168-PA 1..302 5..306 1589 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15767-PA 302 GH15767-PA 2..302 5..306 1390 82.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sc2-PA 302 CG10849-PA 1..302 5..306 1610 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12546-PA 303 GI12546-PA 2..303 5..306 1399 83.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16056-PA 302 GL16056-PA 1..302 5..306 1514 91.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10597-PA 302 GA10597-PA 1..302 5..306 1514 91.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14597-PA 302 GM14597-PA 1..302 5..306 1590 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13786-PA 147 GD13786-PA 1..145 5..149 718 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16064-PA 303 GJ16064-PA 2..303 5..306 1405 85.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16849-PA 302 GK16849-PA 1..302 5..306 1408 84.4 Plus
Dwil\GK15900-PA 302 GK15900-PA 1..302 5..306 1183 72.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21388-PA 302 GE21388-PA 1..302 5..306 1590 97.4 Plus

FI06688.hyp Sequence

Translation from 1 to 921

> FI06688.hyp
TESKMELEILNAKNSKPYGKVKVPSGATPIGDLRALIHKTLKQTPHANRQ
SLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLGPQIGWKTVFLAEYAGP
LIVYLIFYFRPELVYGKAASLPISLTTHIAAGCYTVHYVKRLLETIFVHR
FSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFA
LCELGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEI
GAWVSFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRS
IFPFVL*

FI06688.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sc2-PA 302 CG10849-PA 1..302 5..306 1610 100 Plus