Clone FI07258 Report

Search the DGRC for FI07258

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:72
Well:58
Vector:pFlc-1
Associated Gene/TranscriptShc-RA
Protein status:FI07258.pep: gold
Sequenced Size:1625

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Shc 2008-12-18 5.12 accounting

Clone Sequence Records

FI07258.complete Sequence

1625 bp assembled on 2008-08-22

GenBank Submission: BT044327.1

> FI07258.complete
GAGTGCGGCCACACTTTCGCGAATACGGTCCCACCTTGAGTAATATCCGA
ATTACTAATAACAAAGGCTTGCAGCCTACAGCTGCGGAAAAAGGACCAGC
AAGAAGCCAAATCGCTGCCAAGCGCCCACAGCCACCGCACAAATGCCTAA
GAATGGCGATGCCGGCAACCGGAGCGGTTCCGGGACAACCAGCGACGGCT
GCATCTATCCGGACGACGTCATAATGGGCGTGGGTGTTGCATTCAACGTG
CGGTACACGGGATGCGTTGAGGTCAAGACCTCAATGAAATCCCTGGACTT
CGAGACCCGTACGCAGTTAGCGCGAGAGTGCATCAATCGAGTTTGCGAGG
CGGCCGGTTTAAAGTCTGCTGGCAAGCGGAGATTAACCAACTTCATATCG
GATCGACCCAGCATGCAGCACGCCGGCACCAACATCATCATTAATGTATC
GAGCCGTGCTCTGTCGCTAAGCAACGTGGAAACGGGCGAGGTTATAGCCA
ATCACAATATGCCGCGCATATCGTTCGCGTCCGGCGGTGACAATGACACC
CTCGACTTCCTCGCCTACATAGCCAAGAATGAGGATGAATGGCGGGCATG
TTATGTCCTGGAATGCGCTGGCGGCCAAAGCGAGGATCTAATAGTGACCA
TTGGCAAGGCGTTTGCCTTGCGCTTCAACGCTCTCAGTAGGCTCAATGAT
CCCTCGGCGGATTGTAACATCAATCAAAGCTGCAAGGAGAATGTGAAGGA
GTACTACAACGATTTGCCAAACAAGCTGCCACCAGAAGTGCCGGAACCAC
AACAACAGCAGGTGCAGCAACCTCTCCATCCGCATGCGCCTCGTGTGGCA
CAACTGAATCTGAAGAAGCCTCGCGATCGCCTGAGCAGCAACCTCATCGA
CCTCAACTCCCCGCCTCCCGATCAGACGACCAATAAGTTAGGCCACTTTG
ATCCCCTCCAAGCGACCACAGCTGCCAATTCTGTTTTGCCCTCTGTTCGC
GATGTGTTCGACGGACCGCAATGCCCGCTCACAGCGGAGGTGTGGTTCCA
TGCGGGCATATCCAGACCAATATCGGAGCGTTTGCTGCAGCAGGACGGCG
ACTTTCTGGTGCGCGAGTCACAGGGAAAGCGGGGCCAGTACGTACTAACC
GGATTAGAGGGCAAGACGCCCAAGCATCTGCTTCTCATCGATCCCGAGGG
CGTGGTCCGAACCAAAGATCGCATCTTCGACAGCATTAGCCATCTGATCA
ACTACCACTGGGCACACGCGCTGCCCATCATTTCGGAGGATTCCGAGCTG
GTCTTGCGTAATCCGGTGCGAAGACCCCAGCAGGATCAGGCTGCGTCGCC
CATTACATCAGCATCTTCCTGAACCGGAGGGAACAATCATACGTATAGCT
ACCACCCATCATATACATAACAAATAATTATATATACTGGCATCAGCGTA
CACGATTAGATTTAAATATTGTGCACTCGTAGAATATCTTTTATATATCG
TCTGTGTAAAAACGAACCCATATATTTATGGATTGAATATAAACATATTT
ACAAATATGTGCATGTCTACAGTATTTTCCATTCGAATGCGAATAAAGAT
GATAAACGGAAAAAAAAAAAAAAAA

FI07258.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-RA 1690 Shc-RA 75..1684 2..1611 8050 100 Plus
Shc.a 1612 Shc.a 69..1606 74..1611 7690 100 Plus
Shc.b 1612 Shc.b 69..1606 74..1611 7690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9419300..9420585 324..1609 6280 99.2 Plus
chr3L 24539361 chr3L 9418916..9419238 2..324 1600 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:18:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9427386..9428673 324..1611 6440 100 Plus
3L 28110227 3L 9427002..9427324 2..324 1615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9420486..9421773 324..1611 6440 100 Plus
3L 28103327 3L 9420102..9420424 2..324 1615 100 Plus
Blast to na_te.dros performed 2019-03-16 12:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6893 774..907 135 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6863 769..910 135 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6864 774..896 131 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2379 761..839 125 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2502 774..907 114 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2424 800..907 112 58.7 Plus

FI07258.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:37 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9418914..9419238 1..324 99 -> Plus
chr3L 9419301..9420585 325..1609 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:55:33 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1230 143..1372 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:11:05 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1230 143..1372 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:03:41 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1230 143..1372 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:42 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1230 143..1372 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:19 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1230 143..1372 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:08:03 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1610 1..1609 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:11:05 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1610 1..1609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:03:41 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1600 10..1609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-25 10:58:53 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1610 1..1609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:19 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 1..1600 10..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:37 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9427000..9427324 1..324 99 -> Plus
3L 9427387..9428671 325..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:37 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9427000..9427324 1..324 99 -> Plus
3L 9427387..9428671 325..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:37 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9427000..9427324 1..324 99 -> Plus
3L 9427387..9428671 325..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:03:41 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9420100..9420424 1..324 99 -> Plus
arm_3L 9420487..9421771 325..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:41:17 Download gff for FI07258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9420100..9420424 1..324 99 -> Plus
3L 9420487..9421771 325..1609 100   Plus

FI07258.hyp Sequence

Translation from 142 to 1371

> FI07258.hyp
MPKNGDAGNRSGSGTTSDGCIYPDDVIMGVGVAFNVRYTGCVEVKTSMKS
LDFETRTQLARECINRVCEAAGLKSAGKRRLTNFISDRPSMQHAGTNIII
NVSSRALSLSNVETGEVIANHNMPRISFASGGDNDTLDFLAYIAKNEDEW
RACYVLECAGGQSEDLIVTIGKAFALRFNALSRLNDPSADCNINQSCKEN
VKEYYNDLPNKLPPEVPEPQQQQVQQPLHPHAPRVAQLNLKKPRDRLSSN
LIDLNSPPPDQTTNKLGHFDPLQATTAANSVLPSVRDVFDGPQCPLTAEV
WFHAGISRPISERLLQQDGDFLVRESQGKRGQYVLTGLEGKTPKHLLLID
PEGVVRTKDRIFDSISHLINYHWAHALPIISEDSELVLRNPVRRPQQDQA
ASPITSASS*

FI07258.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-PA 409 CG3715-PA 1..409 1..409 2142 100 Plus

FI07258.pep Sequence

Translation from 142 to 1371

> FI07258.pep
MPKNGDAGNRSGSGTTSDGCIYPDDVIMGVGVAFNVRYTGCVEVKTSMKS
LDFETRTQLARECINRVCEAAGLKSAGKRRLTNFISDRPSMQHAGTNIII
NVSSRALSLSNVETGEVIANHNMPRISFASGGDNDTLDFLAYIAKNEDEW
RACYVLECAGGQSEDLIVTIGKAFALRFNALSRLNDPSADCNINQSCKEN
VKEYYNDLPNKLPPEVPEPQQQQVQQPLHPHAPRVAQLNLKKPRDRLSSN
LIDLNSPPPDQTTNKLGHFDPLQATTAANSVLPSVRDVFDGPQCPLTAEV
WFHAGISRPISERLLQQDGDFLVRESQGKRGQYVLTGLEGKTPKHLLLID
PEGVVRTKDRIFDSISHLINYHWAHALPIISEDSELVLRNPVRRPQQDQA
ASPITSASS*

FI07258.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24647-PA 411 GF24647-PA 1..401 1..399 1912 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15375-PA 408 GG15375-PA 1..408 1..409 2162 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15138-PA 442 GH15138-PA 1..427 1..395 1725 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-PA 409 CG3715-PA 1..409 1..409 2142 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12075-PA 422 GI12075-PA 15..418 13..400 1748 84.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22629-PA 423 GL22629-PA 1..406 1..395 1832 87.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17637-PA 423 GA17637-PA 1..406 1..395 1832 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25147-PA 409 GM25147-PA 1..409 1..409 2183 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14181-PA 409 GD14181-PA 1..409 1..409 2193 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13345-PA 418 GJ13345-PA 17..415 15..401 1779 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17568-PA 434 GK17568-PA 1..417 1..395 1806 85.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20839-PA 408 GE20839-PA 1..408 1..409 2163 99 Plus