Clone FI07418 Report

Search the DGRC for FI07418

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:74
Well:18
Vector:pFlc-1
Associated Gene/TranscriptRab39-RA
Protein status:FI07418.pep: gold
Sequenced Size:1143

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rab39 2008-08-15 Release 5.9 accounting
Rab39 2008-12-18 5.12 accounting

Clone Sequence Records

FI07418.complete Sequence

1143 bp assembled on 2008-07-15

GenBank Submission: BT044331.1

> FI07418.complete
ATCACACACACGCGCACGCATATGAGAAAAAAACACAAAACAAAACAAAA
TTCGAAGGAATTTGAATTCTCGAATATTTATAATTTAACAACCACCAGCG
ACAGCCGGAAATATCTCATTGCAAAGCCAGTAATCGTGTGAAGAACAGAA
AGTTTCGATTTGCAATACAACTGCAGGAAATAAGAAGAAAAACGAGCAGC
ATAAGCAAATCAACGATTTGCGTATCAAACTTTACAAGGGGAAGGCAGAT
TTTTTGCTGCGGATTCAATTCCAAGAGACAAATCCCTCGAATTCGGCTTC
GGAATGGTGGAACCCATTTTCGAGTATCAATTTCGACTGATTTTAATCGG
CGACAGCACCGTGGGCAAGAGCTCGCTGCTCAAATTCTTCACAGACGGCA
AATTCGCCGAGTTATCCGATCCCACAGTTGGCGTCGACTTCTTTGCCCGC
CTCATCGAAATGAAGGACGGCACACAGATCAAGCTCCAGCTGTGGGACAC
TGCTGGCCAAGAGCGCTTCCGTTCGATCACCAAGTCCTACTACCGGAACT
CGGTTGGCGTGCTGCTGGTCTACGACATATCGAATCACGCCAGCTTCGAG
CACATACCGCTGTGGATGATGGAGGCACAGCGTCACATTGAGCCCCACCG
CCCCGTTTTCGCATTGGTCGGCTGCAAACTGGACCTCATCAATGCGGGCG
GACACCGGGAGGTGACCACAGAGGAGGCACAAAAATTTGCCAAACAGCAC
GGTCTGCATTTCGTTGAGACGTCGGCCCGGTCTGGTGCCAATGTGGAGGA
GGCATTTCGCATGGTCACCCAGGAGGTGTACGCCCGCATTCGATCCGGCG
AATATAAGGCGGAGGATGGATGGGACGGCATCAAGTCTGGCTTTTCGCGA
CCCAATAGTCTGGACTTTAATCTCGTCGTAGCAGAGCCGGAAAAGTCATC
ATGTTGTTGATTCACCCCGACCTCATTGTCTATTATTTTCAATACTGTTT
ATGTACATTGATTTGTATCGTATGACCCACCAGTACTCCTTTTCCCCCCT
AAACACAAATTTGTTGACTCTTTAATCTTGTTTAATCGTCTAGTTTAGCT
AAAAAACCAAAACAGTTACGTATATTTAAAAAAAAAAAAAAAA

FI07418.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rab39.b 1501 Rab39.b 11..1138 1..1128 5595 99.7 Plus
Rab39-RA 1137 Rab39-RA 11..1137 1..1127 5590 99.7 Plus
Rab39.a 1111 Rab39.a 410..1111 426..1127 3480 99.7 Plus
Rab39.a 1111 Rab39.a 1..413 1..413 2050 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7627692..7628409 410..1127 3560 99.7 Plus
chrX 22417052 chrX 7626855..7627265 1..411 2040 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:18:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7735762..7736480 410..1128 3565 99.7 Plus
X 23542271 X 7734925..7735335 1..411 2040 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7743860..7744578 410..1128 3565 99.7 Plus
X 23527363 X 7743023..7743433 1..411 2040 99.7 Plus
Blast to na_te.dros performed on 2019-03-16 06:38:11 has no hits.

FI07418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:58 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7626855..7627265 1..411 99 -> Plus
chrX 7627694..7628409 412..1127 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:55:45 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..657 304..960 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:05:33 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..657 304..960 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:33:17 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..657 304..960 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:52:57 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..657 304..960 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:45 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..657 304..960 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:28:35 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..1124 2..1125 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:05:33 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..1124 2..1125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:17 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 3..1129 1..1127 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:52:57 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 1..1124 2..1125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:45 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
Rab39-RA 3..1129 1..1127 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:58 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
X 7734925..7735335 1..411 99 -> Plus
X 7735764..7736479 412..1127 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:58 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
X 7734925..7735335 1..411 99 -> Plus
X 7735764..7736479 412..1127 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:58 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
X 7734925..7735335 1..411 99 -> Plus
X 7735764..7736479 412..1127 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:17 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7628958..7629368 1..411 99 -> Plus
arm_X 7629797..7630512 412..1127 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:34:14 Download gff for FI07418.complete
Subject Subject Range Query Range Percent Splice Strand
X 7743023..7743433 1..411 99 -> Plus
X 7743862..7744577 412..1127 99   Plus

FI07418.hyp Sequence

Translation from 303 to 959

> FI07418.hyp
MVEPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARL
IEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDISNHASFEH
IPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVTTEEAQKFAKQHG
LHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFSRP
NSLDFNLVVAEPEKSSCC*

FI07418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab39-PB 218 CG12156-PB 1..218 1..218 1138 100 Plus
Rab39-PA 218 CG12156-PA 1..218 1..218 1138 100 Plus
Rab2-PB 213 CG3269-PB 3..188 6..196 461 50.3 Plus
Rab2-PA 213 CG3269-PA 3..188 6..196 461 50.3 Plus
Rab11-PA 214 CG5771-PA 5..213 3..218 413 42.6 Plus

FI07418.pep Sequence

Translation from 303 to 959

> FI07418.pep
MVEPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARL
IEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDISNHASFEH
IPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVTTEEAQKFAKQHG
LHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFSRP
NSLDFNLVVAEPEKSSCC*

FI07418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21025-PA 218 GF21025-PA 1..218 1..218 1159 98.6 Plus
Dana\GF11067-PA 213 GF11067-PA 3..213 6..218 475 48.1 Plus
Dana\GF14883-PA 239 GF14883-PA 32..222 6..201 422 43.9 Plus
Dana\GF11646-PA 213 GF11646-PA 5..190 6..196 398 44.5 Plus
Dana\GF17263-PA 205 GF17263-PA 4..205 2..218 395 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19656-PA 218 GG19656-PA 1..218 1..218 1173 100 Plus
Dere\GG23219-PA 213 GG23219-PA 3..213 6..218 475 48.1 Plus
Dere\GG24366-PA 214 GG24366-PA 8..213 6..218 421 42.7 Plus
Dere\GG21802-PA 213 GG21802-PA 5..190 6..196 398 44.5 Plus
Dere\GG14761-PA 205 GG14761-PA 4..205 2..218 397 42.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12582-PA 218 GH12582-PA 1..218 1..218 1094 92.2 Plus
Dgri\GH21751-PA 213 GH21751-PA 3..188 6..196 472 50.3 Plus
Dgri\GH18257-PA 214 GH18257-PA 8..213 6..218 421 42.7 Plus
Dgri\GH11344-PA 243 GH11344-PA 36..226 6..201 421 43.9 Plus
Dgri\GH20926-PA 213 GH20926-PA 5..190 6..196 398 44.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rab39-PB 218 CG12156-PB 1..218 1..218 1138 100 Plus
Rab39-PA 218 CG12156-PA 1..218 1..218 1138 100 Plus
Rab2-PB 213 CG3269-PB 3..188 6..196 461 50.3 Plus
Rab2-PA 213 CG3269-PA 3..188 6..196 461 50.3 Plus
Rab11-PA 214 CG5771-PA 5..213 3..218 413 42.6 Plus
Rab11-PB 214 CG5771-PB 5..213 3..218 413 42.6 Plus
Rab14-PD 215 CG4212-PD 8..198 6..201 412 43.9 Plus
Rab14-PA 215 CG4212-PA 8..198 6..201 412 43.9 Plus
Rab14-PB 239 CG4212-PB 32..222 6..201 412 43.9 Plus
Rab4-PA 213 CG4921-PA 5..190 6..196 389 44.5 Plus
Rab4-PB 213 CG4921-PB 5..190 6..196 389 44.5 Plus
Rab1-PA 205 CG3320-PA 4..205 2..218 376 42.4 Plus
Rab30-PD 223 CG9100-PD 4..209 6..218 373 38 Plus
Rab30-PC 223 CG9100-PC 4..209 6..218 373 38 Plus
Rab30-PB 223 CG9100-PB 4..209 6..218 373 38 Plus
Rab30-PA 223 CG9100-PA 4..209 6..218 373 38 Plus
Rab35-PB 201 CG9575-PB 5..168 6..175 362 45.9 Plus
Rab35-PD 201 CG9575-PD 5..168 6..175 362 45.9 Plus
Rab35-PA 201 CG9575-PA 5..168 6..175 362 45.9 Plus
Rab10-PA 204 CG17060-PA 1..182 1..188 359 40.4 Plus
Rab8-PC 207 CG8287-PC 5..172 6..178 350 43.2 Plus
Rab8-PA 207 CG8287-PA 5..172 6..178 350 43.2 Plus
Rab26-PE 410 CG34410-PE 206..386 3..189 350 40 Plus
Rab26-PD 410 CG34410-PD 206..386 3..189 350 40 Plus
Rab26-PC 410 CG34410-PC 206..386 3..189 350 40 Plus
Rab9Fb-PA 214 CG32670-PA 4..172 6..179 339 42.5 Plus
Rab19-PB 219 CG7062-PP3-RB 15..184 3..175 338 43.4 Plus
Rab19-PA 219 CG7062-PA 15..184 3..175 338 43.4 Plus
Rab5-PI 219 CG3664-PI 29..190 9..175 335 41.3 Plus
Rab5-PH 219 CG3664-PH 29..190 9..175 335 41.3 Plus
Rab5-PG 219 CG3664-PG 29..190 9..175 335 41.3 Plus
Rab5-PE 219 CG3664-PE 29..190 9..175 335 41.3 Plus
Rab5-PC 219 CG3664-PC 29..190 9..175 335 41.3 Plus
Rab5-PD 219 CG3664-PD 29..190 9..175 335 41.3 Plus
Rab5-PF 219 CG3664-PF 29..190 9..175 335 41.3 Plus
Rab5-PB 219 CG3664-PB 29..190 9..175 335 41.3 Plus
Rab5-PA 219 CG3664-PA 29..190 9..175 335 41.3 Plus
Rab26-PG 388 CG34410-PG 192..364 11..189 325 38.9 Plus
Rab26-PB 388 CG34410-PB 192..364 11..189 325 38.9 Plus
Rab35-PC 190 CG9575-PC 4..157 16..175 322 45 Plus
RabX2-PA 195 CG2885-PA 4..171 6..178 321 41.6 Plus
Rab18-PA 197 CG3129-PA 7..170 11..184 319 39.7 Plus
RabX4-PA 213 CG31118-PA 5..186 6..195 314 35.3 Plus
Rab27-PC 230 CG14791-PC 8..189 6..187 313 37.3 Plus
Rab3-PB 220 CG7576-PB 18..175 6..168 308 39.3 Plus
Rab3-PA 220 CG7576-PA 18..175 6..168 308 39.3 Plus
Rab6-PB 208 CG6601-PB 12..169 9..171 307 41.1 Plus
Rab6-PA 208 CG6601-PA 12..169 9..171 307 41.1 Plus
Rab27-PB 236 CG14791-PB 19..195 11..187 302 37.8 Plus
Rab21-PC 222 CG17515-PC 14..173 10..173 285 37.8 Plus
Rab21-PD 222 CG17515-PD 14..173 10..173 285 37.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16205-PA 218 GI16205-PA 1..218 1..218 1157 97.7 Plus
Dmoj\GI19298-PA 213 GI19298-PA 3..188 6..196 474 50.3 Plus
Dmoj\GI12880-PA 243 GI12880-PA 36..226 6..201 422 43.9 Plus
Dmoj\GI23656-PA 214 GI23656-PA 8..213 6..218 421 42.7 Plus
Dmoj\GI18364-PA 213 GI18364-PA 5..190 6..196 397 44.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14723-PA 218 GL14723-PA 1..218 1..218 1150 97.2 Plus
Dper\GL11116-PA 213 GL11116-PA 3..188 6..196 472 50.3 Plus
Dper\GL21269-PA 239 GL21269-PA 32..239 6..218 424 41.3 Plus
Dper\GL21786-PA 214 GL21786-PA 8..213 6..218 421 42.7 Plus
Dper\GL11470-PA 213 GL11470-PA 5..190 6..196 398 44.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11442-PA 218 GA11442-PA 1..218 1..218 1150 97.2 Plus
Dpse\GA17076-PA 213 GA17076-PA 3..188 6..196 472 50.3 Plus
Dpse\GA18036-PA 239 GA18036-PA 32..239 6..218 424 41.3 Plus
Dpse\GA19116-PA 214 GA19116-PA 8..213 6..218 421 42.7 Plus
Dpse\GA18527-PA 213 GA18527-PA 5..190 6..196 398 44.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17535-PA 218 GM17535-PA 1..218 1..218 1173 100 Plus
Dsec\GM20894-PA 200 GM20894-PA 3..174 6..182 457 52 Plus
Dsec\GM15560-PA 239 GM15560-PA 32..222 6..201 422 43.9 Plus
Dsec\GM15065-PA 214 GM15065-PA 8..213 6..218 421 42.7 Plus
Dsec\GM15089-PA 205 GM15089-PA 4..205 2..218 397 42.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16855-PA 166 GD16855-PA 1..166 53..218 902 100 Plus
Dsim\GD10420-PA 213 GD10420-PA 3..213 6..218 475 48.1 Plus
Dsim\GD23961-PA 239 GD23961-PA 25..222 1..201 415 42.9 Plus
Dsim\GD11294-PA 213 GD11294-PA 5..190 6..196 398 44.5 Plus
Dsim\GD19996-PA 205 GD19996-PA 4..205 2..218 397 42.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15895-PA 218 GJ15895-PA 1..218 1..218 1145 96.3 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 3..188 6..196 472 50.3 Plus
Dvir\GJ18183-PA 236 GJ18183-PA 29..219 6..201 422 43.9 Plus
Dvir\GJ23499-PA 214 GJ23499-PA 8..213 6..218 421 42.7 Plus
Dvir\GJ21435-PA 213 GJ21435-PA 5..190 6..196 402 44.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25784-PA 219 GK25784-PA 1..219 1..218 1145 97.7 Plus
Dwil\GK23088-PA 213 GK23088-PA 3..188 6..196 472 50.3 Plus
Dwil\GK18273-PA 243 GK18273-PA 36..241 6..217 426 42 Plus
Dwil\GK14185-PA 214 GK14185-PA 8..213 6..218 420 42.7 Plus
Dwil\GK10719-PA 213 GK10719-PA 5..190 6..196 399 44.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15730-PA 218 GE15730-PA 1..218 1..218 1173 100 Plus
Dyak\GE19072-PA 213 GE19072-PA 3..213 6..218 475 48.1 Plus
Dyak\GE19031-PA 239 GE19031-PA 32..222 6..201 422 43.9 Plus
Dyak\GE11879-PA 213 GE11879-PA 5..190 6..196 398 44.5 Plus
Dyak\Rab1-PA 205 GE25003-PA 4..205 2..218 397 42.4 Plus