Clone FI07460 Report

Search the DGRC for FI07460

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:74
Well:60
Vector:pFlc-1
Associated Gene/TranscriptalphaTub85E-RA
Protein status:FI07460.pep: gold
Sequenced Size:1575

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
alphaTub85E 2008-12-18 5.12 accounting

Clone Sequence Records

FI07460.complete Sequence

1575 bp assembled on 2008-08-22

GenBank Submission: BT044334.1

> FI07460.complete
GAGTTAGTTGACTCCCAGCTGTGTGTCGCATCACAGACCAGTGCTAGGAT
TTTCGTGATTGAATCTGCTTTTTTAAACTTCAGCTTAAACTTTTGATCAT
CATGAGGGAATGCATTTCGGTTCACATTGGCCAAGCTGGTGTCCAGATCG
GCAATGCCTGCTGGGAACTTTACTGCCTGGAGCACGGCATCCAGCCCGAT
GGCCATATGCCCTCCGATAAAACCGTGGGCGGAGGCGATGACTCCTTCAG
CACCTTCTTCAGCGAGACTGGAGCTGGTAAGCATGTGCCGCGTGCCGTGT
TCGTGGATCTGGAGCCCACTGTGGTGGATGAGGTGCGGACAGGAACCTAC
CGCCAGCTGTTCCATCCGGAGCAACTGATCACCGGTAAGGAGGATGCGGC
CAACAACTATGCCCGCGGCCACTATACCATCGGTAAGGAGATCGTCGACG
TGGTCCTGGACAGGATTCGCAAGTTGGCGGATCAGTGCACGGGTCTGCAG
GGATTCCTGGTCTTCCACTCCTTCGGCGGCGGCACTGGCTCTGGATTTAC
GTCGCTGCTGATGGAGCGCCTGTCCGTGGACTATGGAAAGAAGTCAAAGC
TGGAGTTCTCCATTTACCCAGCACCACAAGTGTCCACAGCTGTGGTCGAG
CCATACAACTCGATCTTAACCACCCACACAACGCTGGAGCACTCGGACTG
TGCGTTTATGGTTGACAACGAGGCAATCTACGACATCTGCCGGCGCAACT
TGGATATCGAGCGACCCACCTACATGAATCTCAATCGCCTAATTGGCCAG
ATCGTTTCCTCCATTACGGCCTCGTTGCGCTTCGATGGCGCCCTGAATGT
GGATCTGACCGAGTTCCAGACCAATTTGGTGCCCTACCCACGCATTCATT
TCCCACTGGCGACATACGCTCCCGTCATTTCCGTGGAGAAGGCCTACCAT
GAGCAACTGACCGTGGCCGAGATCACCAATGCCTGCTTCGAGCCGGCCAA
CCAGATGGTCAAGTGTGATCCGCGTCGTGGCAAGTACATGGCCTGCTGCA
TGCTCTACCGCGGTGATGTGGTGCCCAAGGATGTGAACGCAGCCATTGCC
ACCATCAAGACCAAGCGCTCTATCCAGTTCGTCGACTGGTGTCCCACGGG
CTTCAAGGTGGGCATCAACTATCAGCCACCCACCGTTGTTCCTGGCGGAG
ATCTGGCCAAGGTGCAGCGCGCCGTCTGCATGCTGTCCAATACCACTGCC
ATTGCCGAGGCCTGGGCCCGTCTGGATCACAAGTTCGATCTGATGTACGC
CAAGAGGGCCTTCGTCCACTGGTACGTGGGTGAGGGCATGGAGGAGGGCG
AGTTCGCCGAGGCTCGCGAGGATCTCGCTGCCCTCGAGAAGGACTACGAG
GAGGTAGGCATCGACTCCACCACCGAACTGGGGGAAGATGAGGAATACTA
GAGAAAACGTTGTCAACAAATGATACAGCCATTACAACTTTATAAACATC
ACTTTCTTTCTACCAAATACCAATGCATAAAACAGTTTCGCAATAAAACA
GTTTAACACAAAAAAAAAAAAAAAA

FI07460.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub85E-RA 1664 alphaTub85E-RA 70..1628 3..1561 7795 100 Plus
alphaTub84B.c 2456 alphaTub84B.c 403..1694 127..1418 4030 87.4 Plus
alphaTub84B.b 2133 alphaTub84B.b 403..1694 127..1418 4030 87.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5557048..5557977 1559..630 4650 100 Minus
chr3R 27901430 chr3R 2913283..2914574 127..1418 4030 87.5 Plus
chr3R 27901430 chr3R 3357362..3358651 129..1418 3975 87.2 Plus
chr3R 27901430 chr3R 5558114..5558641 631..104 2640 100 Minus
chr3L 24539361 chr3L 9674060..9675102 363..1405 1060 73.4 Plus
chr3R 27901430 chr3R 5558983..5559084 104..3 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:18:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9731219..9732150 1561..630 4660 100 Minus
3R 32079331 3R 7087256..7088547 127..1418 4030 87.5 Plus
3R 32079331 3R 7531286..7532575 129..1418 3975 87.2 Plus
3R 32079331 3R 9732277..9732804 631..104 2640 100 Minus
3L 28110227 3L 9682194..9683236 363..1405 1030 73.3 Plus
3R 32079331 3R 9733146..9733247 104..3 510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9472050..9472981 1561..630 4660 100 Minus
3R 31820162 3R 6828087..6829378 127..1418 4030 87.4 Plus
3R 31820162 3R 7272117..7273406 129..1418 3975 87.2 Plus
3R 31820162 3R 9473108..9473635 631..104 2640 100 Minus
3R 31820162 3R 9473977..9474078 104..3 510 100 Minus
3L 28103327 3L 9675906..9676102 975..1171 400 80.2 Plus
3L 28103327 3L 9675427..9675664 496..733 380 77.3 Plus
3L 28103327 3L 9676210..9676336 1279..1405 335 84.2 Plus
3L 28103327 3L 9675294..9675371 363..440 180 82 Plus
3L 28103327 3L 9675040..9675089 142..191 175 90 Plus
3L 28103327 3L 9675696..9675820 765..889 175 76 Plus
Blast to na_te.dros performed on 2019-03-16 12:05:52 has no hits.

FI07460.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:42 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5557048..5557977 630..1559 100 <- Minus
chr3R 5558116..5558640 105..629 100 <- Minus
chr3R 5558983..5559085 1..104 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:55:49 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1350 102..1451 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:11:07 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1350 102..1451 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:04:56 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1350 102..1451 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:43 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1350 102..1451 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:30 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1350 102..1451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:08:07 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1558 3..1559 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:11:07 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 18..1575 1..1559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:04:56 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 3..1560 1..1559 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-25 10:58:58 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 1..1558 3..1559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:30 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub85E-RA 3..1560 1..1559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:42 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9731221..9732150 630..1559 100 <- Minus
3R 9732279..9732803 105..629 100 <- Minus
3R 9733146..9733248 1..104 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:42 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9731221..9732150 630..1559 100 <- Minus
3R 9732279..9732803 105..629 100 <- Minus
3R 9733146..9733248 1..104 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:42 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9731221..9732150 630..1559 100 <- Minus
3R 9732279..9732803 105..629 100 <- Minus
3R 9733146..9733248 1..104 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:04:56 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5556943..5557872 630..1559 100 <- Minus
arm_3R 5558001..5558525 105..629 100 <- Minus
arm_3R 5558868..5558970 1..104 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:41:20 Download gff for FI07460.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9472052..9472981 630..1559 100 <- Minus
3R 9473110..9473634 105..629 100 <- Minus
3R 9473977..9474079 1..104 99   Minus

FI07460.pep Sequence

Translation from 101 to 1450

> FI07460.pep
MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFS
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPAN
QMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEVGIDSTTELGEDEEY*

FI07460.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11529-PA 449 GF11529-PA 1..449 1..449 2424 99.6 Plus
Dana\GF17649-PA 450 GF17649-PA 1..439 1..439 2249 96.6 Plus
Dana\GF25153-PA 462 GF25153-PA 1..458 1..447 1712 67.5 Plus
Dana\GF16752-PA 452 GF16752-PA 6..452 3..448 1250 51.2 Plus
Dana\GF12605-PA 447 GF12605-PA 1..424 1..434 896 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17337-PA 449 GG17337-PA 1..449 1..449 2432 100 Plus
Dere\GG13808-PA 450 GG13808-PA 1..439 1..439 2249 96.6 Plus
Dere\GG14119-PA 450 GG14119-PA 1..439 1..439 2238 96.1 Plus
Dere\GG15399-PA 462 GG15399-PA 1..459 1..449 1722 68 Plus
Dere\GG22615-PA 455 GG22615-PA 6..442 3..441 1254 52.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22334-PA 455 GH22334-PA 8..455 2..449 2370 97.1 Plus
Dgri\GH19001-PA 450 GH19001-PA 1..439 1..439 2249 96.6 Plus
Dgri\GH16316-PA 460 GH16316-PA 1..450 1..439 1672 67.4 Plus
Dgri\GH15056-PA 449 GH15056-PA 6..447 3..448 1200 51.3 Plus
Dgri\GH20203-PA 447 GH20203-PA 1..424 1..434 896 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub85E-PA 449 CG9476-PA 1..449 1..449 2381 100 Plus
alphaTub84B-PA 450 CG1913-PA 1..450 1..449 2283 95.3 Plus
alphaTub84D-PA 450 CG2512-PA 1..450 1..449 2272 94.9 Plus
alphaTub67C-PA 462 CG8308-PA 1..458 1..447 1726 67.7 Plus
CG7794-PA 455 CG7794-PA 6..442 3..441 1264 52.8 Plus
betaTub56D-PB 447 CG9277-PB 1..441 1..448 942 40.6 Plus
betaTub97EF-PB 457 CG4869-PB 1..440 1..447 940 39.6 Plus
betaTub97EF-PC 457 CG4869-PC 1..440 1..447 930 39.3 Plus
betaTub85D-PA 446 CG9359-PA 1..441 1..448 924 40.1 Plus
betaTub60D-PA 454 CG3401-PA 1..430 1..434 911 39.8 Plus
betaTub60D-PB 453 CG3401-PB 1..429 1..434 909 39.6 Plus
betaTub56D-PA 456 CG9277-PA 30..450 21..448 900 40.4 Plus
CG32396-PA 462 CG32396-PA 1..421 1..432 736 34.6 Plus
gammaTub23C-PA 475 CG3157-PA 4..441 3..433 604 32.1 Plus
gammaTub37C-PB 457 CG17566-PB 4..437 3..433 589 31.2 Plus
gammaTub37C-PA 457 CG17566-PA 4..437 3..433 589 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23057-PA 450 GI23057-PA 1..439 1..439 2249 96.6 Plus
Dmoj\GI23620-PA 414 GI23620-PA 1..414 36..449 2192 98.1 Plus
Dmoj\GI13261-PA 461 GI13261-PA 1..450 1..439 1645 67.3 Plus
Dmoj\GI23711-PA 452 GI23711-PA 6..435 3..435 1242 52.9 Plus
Dmoj\GI20729-PA 447 GI20729-PA 1..424 1..434 896 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12416-PA 1216 GL12416-PA 768..1205 2..439 2275 96.6 Plus
Dper\GL12714-PA 464 GL12714-PA 1..459 1..448 1712 68 Plus
Dper\GL12586-PA 458 GL12586-PA 6..436 3..435 1246 52.9 Plus
Dper\GL16725-PA 447 GL16725-PA 1..424 1..434 896 40.8 Plus
Dper\GL23875-PA 511 GL23875-PA 1..496 1..447 832 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15128-PA 450 GA15128-PA 1..439 1..439 2249 96.6 Plus
Dpse\GA20973-PA 464 GA20973-PA 1..459 1..448 1712 68 Plus
Dpse\GA20592-PA 458 GA20592-PA 6..436 3..435 1246 52.9 Plus
Dpse\GA27086-PB 455 GA27086-PB 1..440 1..447 911 39.8 Plus
Dpse\GA27686-PA 447 GA27686-PA 1..424 1..434 896 40.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26223-PA 449 GM26223-PA 1..449 1..449 2432 100 Plus
Dsec\GM10931-PA 450 GM10931-PA 1..439 1..439 2249 96.6 Plus
Dsec\GM10965-PA 450 GM10965-PA 1..439 1..439 2240 96.4 Plus
Dsec\GM25175-PA 462 GM25175-PA 1..459 1..449 1719 67.8 Plus
Dsec\GM15273-PA 455 GM15273-PA 6..436 3..435 1260 53.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20767-PA 449 GD20767-PA 1..449 1..449 2432 100 Plus
Dsim\GD19909-PA 450 GD19909-PA 1..439 1..439 2249 96.6 Plus
Dsim\GD19940-PA 450 GD19940-PA 1..439 1..439 2240 96.4 Plus
Dsim\GD14204-PA 462 GD14204-PA 1..459 1..449 1719 67.8 Plus
Dsim\GD19196-PA 455 GD19196-PA 6..436 3..435 1260 53.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24568-PA 450 GJ24568-PA 1..439 1..439 2249 96.6 Plus
Dvir\GJ11156-PA 414 GJ11156-PA 1..414 36..449 2170 96.6 Plus
Dvir\GJ12031-PA 460 GJ12031-PA 1..450 1..439 1656 67.6 Plus
Dvir\GJ23270-PA 450 GJ23270-PA 6..449 3..448 1256 52.6 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 1..424 1..434 896 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14362-PA 449 GK14362-PA 1..449 1..449 2393 98.2 Plus
Dwil\GK12743-PA 450 GK12743-PA 1..439 1..439 2249 96.6 Plus
Dwil\GK16627-PA 462 GK16627-PA 1..446 1..435 1688 68.6 Plus
Dwil\GK11238-PA 456 GK11238-PA 6..449 3..448 1263 52.2 Plus
Dwil\GK15706-PA 447 GK15706-PA 1..424 1..434 896 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24741-PA 449 GE24741-PA 1..449 1..449 2432 100 Plus
Dyak\alphaTub84B-PA 450 GE24900-PA 1..439 1..439 2249 96.6 Plus
Dyak\GE24934-PA 450 GE24934-PA 1..439 1..439 2238 96.1 Plus
Dyak\GE20865-PA 462 GE20865-PA 1..459 1..449 1717 67.8 Plus
Dyak\GE25507-PA 455 GE25507-PA 6..443 3..442 1255 52.9 Plus

FI07460.hyp Sequence

Translation from 101 to 1450

> FI07460.hyp
MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFS
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPAN
QMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEVGIDSTTELGEDEEY*

FI07460.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub85E-PA 449 CG9476-PA 1..449 1..449 2381 100 Plus
alphaTub84B-PA 450 CG1913-PA 1..450 1..449 2283 95.3 Plus
alphaTub84D-PA 450 CG2512-PA 1..450 1..449 2272 94.9 Plus
alphaTub67C-PA 462 CG8308-PA 1..458 1..447 1726 67.7 Plus
CG7794-PA 455 CG7794-PA 6..442 3..441 1264 52.8 Plus