Clone FI07665 Report

Search the DGRC for FI07665

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:76
Well:65
Vector:pOT2
Associated Gene/TranscriptUpdo-RA
Protein status:FI07665.pep: gold
Sequenced Size:1299

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Updo 2008-08-15 Release 5.9 accounting
Updo 2008-12-18 5.12 accounting

Clone Sequence Records

FI07665.complete Sequence

1299 bp assembled on 2008-08-14

GenBank Submission: BT044350.1

> FI07665.complete
AGAACGCACACTCATGCAGAATTGCGGGATTCCGTGACAGATTTCATCAA
ATTTACGGGTTTCATCAGTGGAAATAACTTCGTTAGCCCTCTACTACCTT
TTTAACAGCCAAAAGTCACTATGAAAGACGCAAAGCCCTTTCCCGTGCTC
AAGAATGATAACCTGCTGCGCGCCGCACGTGGCGAGGTGGTGGACCGGGT
GCCTGTTTGGGTGATGCGCCAAGCGGGGCGCTACCTGCCGGAGTTCCAGG
AGCTGCGAAAGCACCACGACTTCTTCACCGTCTGCCGCACCCCGGAGCTA
GCGTGCGAAGTGACCATGCAGCCATTGCGCCGCTTCGACCTGGACGCCTC
CATAATTTTTTCGGACATCCTTGTCATTCCCCAAGCACTCGGCCTCACCG
TGGAGATGCACGCGGGCGTTGGTCCCGTTCTGCCACAGCCCATCGTGGTG
CCGGAGGACCTCAAGCGCCTGACGCCGGACGGAGCCTTGTCCCGCCTCAG
CTACGTGGGCGACGCAATCACCATGATGCGGCACAAGCTCGAAGGTCGAG
TGCCGCTAATCGGCTTTACAGGAGCGCCGTGGACACTAATGGGATATATG
ATCGAGGGCGGTGGGAGCAAGACCATGTCGAAAGCTAAAGCTTGGCTCAA
CGAACATCCTGAGGACTCTAAGCTGTTCCTGAACCTGCTGACCGACGCAA
TTGTGGACTACCTGGAGATGCAGGTGAAAGCTGGCGCTCAAATGCTGCAG
GTATTCGAATCGTCCGCCGAGCATCTCTCCAAGGAGCAGTTCCTGCAGTG
GTGTGTACCCTACCTGAAGAGAATACGCGACGAGCTGGTGGACCGTCTCA
CAAAGAAGGCCATCCCCGTGGTTCCCATGACGCTGTTCGCTAAGGGTGCT
GGGCACTCGCTGAAGGAGCAGAGCGAACTGGGCTACGACGTTATTGGCTT
GGATTGGACTGTGGATCCGCTGGAGGCACGCAATTTGGTCGGACCGAACA
TTACGTTGCAAGGCAACTTGGATCCTCAGGACATGTACCGCGATCCTGAT
GAGCTGCGCAACCTGACCACAGAAATGGTGCACAAGTTCGGCAAGTCGCG
CTACATCGCCAATCTGGGACATGGAATCACGCCTCAGACTCCGATCACGA
GCATGGAAGTGCTGGTGGAGGCGGTGCACAAGGCTCTGTAGGGTGTGCCT
TTCACTAACCTTTAATTTTATGATGCTTTTATCGAATGCAATAAAGACAA
TTGGCCTTGGGTTTAGGGTAACCTCAAAAAAAAAAAAAAAAAAAAAAAA

FI07665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Updo-RA 1366 Updo-RA 92..1366 1..1275 6300 99.6 Plus
Updo-RB 1217 Updo-RB 83..1217 134..1268 5630 99.7 Plus
Updo.a 1207 Updo.a 74..1207 134..1267 5625 99.7 Plus
Updo.a 1207 Updo.a 1..69 67..135 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5472421..5473166 134..879 3700 99.7 Plus
chr2R 21145070 chr2R 5473225..5473621 879..1275 1970 99.7 Plus
chr2R 21145070 chr2R 5472162..5472296 1..135 645 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:19:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9584926..9585671 134..879 3700 99.7 Plus
2R 25286936 2R 9585730..9586127 879..1276 1975 99.7 Plus
2R 25286936 2R 9584667..9584801 1..135 645 98.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9586125..9586870 134..879 3700 99.7 Plus
2R 25260384 2R 9586929..9587326 879..1276 1975 99.7 Plus
2R 25260384 2R 9585866..9586000 1..135 645 98.5 Plus
Blast to na_te.dros performed 2019-03-16 05:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 6693..6743 3..51 115 72.5 Plus

FI07665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:40:45 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5472162..5472296 1..135 98 -> Plus
chr2R 5472423..5473166 136..879 99 -> Plus
chr2R 5473226..5473621 880..1275 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:56:38 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1071 121..1191 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:06:54 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1071 121..1191 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:29 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1071 121..1191 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:18:21 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1071 121..1191 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:54 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1071 121..1191 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:31:51 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1267 1..1267 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:06:54 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1267 1..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:29 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 25..1299 1..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-14 11:29:03 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 1..1267 1..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:54 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
Updo-RA 25..1299 1..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:45 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9584667..9584801 1..135 98 -> Plus
2R 9584928..9585671 136..879 99 -> Plus
2R 9585731..9586126 880..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:45 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9584667..9584801 1..135 98 -> Plus
2R 9584928..9585671 136..879 99 -> Plus
2R 9585731..9586126 880..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:45 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9584667..9584801 1..135 98 -> Plus
2R 9584928..9585671 136..879 99 -> Plus
2R 9585731..9586126 880..1275 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:29 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5472172..5472306 1..135 98 -> Plus
arm_2R 5472433..5473176 136..879 99 -> Plus
arm_2R 5473236..5473631 880..1275 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:36:02 Download gff for FI07665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9586127..9586870 136..879 99 -> Plus
2R 9586930..9587325 880..1275 99   Plus
2R 9585866..9586000 1..135 98 -> Plus

FI07665.pep Sequence

Translation from 120 to 1190

> FI07665.pep
MKDAKPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHD
FFTVCRTPELACEVTMQPLRRFDLDASIIFSDILVIPQALGLTVEMHAGV
GPVLPQPIVVPEDLKRLTPDGALSRLSYVGDAITMMRHKLEGRVPLIGFT
GAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKLFLNLLTDAIVDYLEM
QVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPV
VPMTLFAKGAGHSLKEQSELGYDVIGLDWTVDPLEARNLVGPNITLQGNL
DPQDMYRDPDELRNLTTEMVHKFGKSRYIANLGHGITPQTPITSMEVLVE
AVHKAL*

FI07665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12476-PA 356 GF12476-PA 1..356 1..356 1804 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24087-PA 356 GG24087-PA 1..356 1..356 1868 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22930-PA 356 GH22930-PA 1..356 1..356 1716 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Updo-PA 356 CG1818-PA 1..356 1..356 1855 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18416-PA 356 GI18416-PA 1..356 1..356 1723 89.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17145-PA 351 GL17145-PA 1..351 1..356 1752 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14829-PA 356 GA14829-PA 1..356 1..356 1796 94.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21135-PA 356 GM21135-PA 1..356 1..356 1890 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10665-PA 356 GD10665-PA 1..356 1..356 1890 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Updo-PA 388 GJ21502-PA 33..388 1..356 1721 89.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15945-PA 356 GK15945-PA 1..356 1..356 1760 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Updo-PA 356 GE19288-PA 1..356 1..356 1869 99.2 Plus

FI07665.hyp Sequence

Translation from 120 to 1190

> FI07665.hyp
MKDAKPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHD
FFTVCRTPELACEVTMQPLRRFDLDASIIFSDILVIPQALGLTVEMHAGV
GPVLPQPIVVPEDLKRLTPDGALSRLSYVGDAITMMRHKLEGRVPLIGFT
GAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKLFLNLLTDAIVDYLEM
QVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPV
VPMTLFAKGAGHSLKEQSELGYDVIGLDWTVDPLEARNLVGPNITLQGNL
DPQDMYRDPDELRNLTTEMVHKFGKSRYIANLGHGITPQTPITSMEVLVE
AVHKAL*

FI07665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Updo-PA 356 CG1818-PA 1..356 1..356 1855 100 Plus