Clone FI07728 Report

Search the DGRC for FI07728

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:77
Well:28
Vector:pOT2
Associated Gene/TranscriptKarl-RA
Protein status:FI07728.pep: gold
Sequenced Size:1080

Clone Sequence Records

FI07728.complete Sequence

1080 bp assembled on 2009-05-14

GenBank Submission: BT083442.1

> FI07728.complete
CGCAACGGAGATCGAGCGTCTGAACCCGCCGGAAGATCAACGACAATAAA
TAATTGTAGCTCACCGTCATCCGGATTAATGGAGAGGATCATGGGCAGGA
ATGGATCGCTCCTACTGACCGCCGTCCTCATAATTATCCTGGATGTTTTG
CTTGCACCAGTGGGTGCCAACCTGTGGACACGACACAATAGCAATGCCTA
TCAAACCAGGAGGCGCTCAGGTCCCAGCAATCGGTGTCCCAAGGTGGGAG
CCATTAAGAACTTCGATTTGGAGCGCATGATGGGCTGTTGGCACGTGGTT
CAGTATTACGCATCCACAGAGGAACTTCCGGAGTACGCGTGCATGCGCAG
TCACTTTTCCTTTTCCAAAGAGGATCAGCATATAACGATGAACTTTAGCT
ACATATTTGCGGAGGATCCGCTGCGCGAGAAGCTCGTGGGCAACATCACC
TGGATGATACCCAAATTCCAAGAGCCAGGACATTGGCAGCACACGGAGGA
CATATATGAGGGCATCTACAACACATACGTTCTGGACACGGACTACGACA
CCTGGGGCCTGGTGATGCACTGCGCCGAGAAGAAGAAGCAACCACGTTAC
CTGTCCGCCCTGCTTTTGTCGCGGAAAACATCGTTGGCCGACAACGAGAT
CAGCTTTCTGCGCGGCAAGTTGCCGCAGGATATCGACACATCCTTTATGT
TTAACATCGGGCAGGAATCGTGCGACAATCTAATGGAATCCAGTCGCGAC
GATCCACTGGCCTATGTGGTGAATGGACGCAAGAGAGCCAAGGAAATCTT
CAAAATTATCAATAAGCCTGACGGCAGAGTGCGCGCTAGTAGCGAAGCGA
GAAGCTATGAGCAAAGCGAGAAGCTGTGAGCAAAGCGAGTCGATGGCAAA
GTAAGAGCTAAGCGAGAAACGAGCTACATTGCTCTCTTTTAGTTATTAAT
GTGAACGTGATGGATTCGGACGAGGAATTTTTTGCATCAAGCGCAACTAT
TAACTTTCTGTTAAAACTGTCGTCCACCCTCTTAACTGAAATAGAAATGA
AAAAGGCGAAAAAAAAAAAAAAAAAAAAAA

FI07728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Karl-RB 1765 Karl-RB 149..1208 1..1060 5255 99.7 Plus
Karl.a 1821 Karl.a 205..1264 1..1060 5255 99.7 Plus
Karl.b 1765 Karl.b 149..1208 1..1060 5255 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11682529..11683081 506..1058 2750 99.8 Plus
chrX 22417052 chrX 11680022..11680266 1..245 1225 100 Plus
chrX 22417052 chrX 11682027..11682166 242..381 700 100 Plus
chrX 22417052 chrX 11682232..11682360 382..510 630 99.2 Plus
chr4 1351717 chr4 338398..338601 860..1057 520 84.8 Plus
chr2RHet 3288813 chr2RHet 1746063..1746222 1016..860 480 88.1 Minus
chr3LHet 2555433 chr3LHet 2018534..2018686 864..1016 450 86.3 Plus
chr2R 21145070 chr2R 1354346..1354502 1016..860 440 85.4 Minus
chr2R 21145070 chr2R 857282..857427 1015..869 415 88.5 Minus
chr2RHet 3288813 chr2RHet 1793487..1793638 1058..912 410 87.6 Minus
chrU 10048995 chrU 1745117..1745268 1058..912 410 87.6 Minus
chr3L 24539361 chr3L 23679559..23679759 1058..860 400 83.3 Minus
chr2L 23010047 chr2L 22685954..22686152 860..1053 400 84.6 Plus
chrU 10048995 chrU 375742..375871 1058..935 360 86.9 Minus
chr3LHet 2555433 chr3LHet 2212063..2212191 935..1058 355 88.5 Plus
chr3RHet 2517486 chr3RHet 2135392..2135575 1058..879 340 81.3 Minus
chr2L 23010047 chr2L 22893232..22893312 1016..936 330 93.8 Minus
chr2L 23010047 chr2L 22880973..22881113 1016..867 320 84 Minus
chr4 1351717 chr4 1028845..1028904 957..1016 255 95 Plus
chr3LHet 2555433 chr3LHet 2222673..2222740 949..1016 250 91.2 Plus
chr2RHet 3288813 chr2RHet 727431..727527 867..962 240 85.6 Plus
chr3RHet 2517486 chr3RHet 2031689..2031760 963..892 240 88.9 Minus
chr2RHet 3288813 chr2RHet 56565..56627 977..913 230 93.8 Minus
chrYHet 347003 chrYHet 205890..205992 1016..913 230 85.7 Minus
chrYHet 347003 chrYHet 226830..226932 1016..913 230 85.7 Minus
chr2L 23010047 chr2L 22685931..22685984 818..871 195 90.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:19:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11791358..11791912 506..1060 2730 99.5 Plus
X 23542271 X 11788861..11789105 1..245 1225 100 Plus
X 23542271 X 11790856..11790995 242..381 700 100 Plus
X 23542271 X 11791061..11791189 382..510 630 99.2 Plus
4 1348131 4 317826..318034 860..1062 530 84.7 Plus
2R 25286936 2R 2971019..2971178 1016..860 480 88.1 Minus
3L 28110227 3L 26736243..26736395 864..1016 450 86.3 Plus
2R 25286936 2R 5466959..5467115 1016..860 425 84.7 Minus
2R 25286936 2R 3010349..3010502 1060..912 420 87.7 Minus
3L 28110227 3L 23690651..23690853 1060..860 410 83.4 Minus
2R 25286936 2R 858164..858362 1053..860 400 84.6 Minus
2R 25286936 2R 4969664..4969809 1015..869 400 87.8 Minus
2L 23513712 2L 22794728..22794926 860..1053 400 84.6 Plus
3L 28110227 3L 27105277..27105408 935..1061 370 88.7 Plus
3R 32079331 3R 1838184..1838315 1060..935 370 87.1 Minus
3R 32079331 3R 3345987..3346172 879..1060 350 81.5 Plus
2L 23513712 2L 23001954..23002073 1060..936 335 86.4 Minus
2L 23513712 2L 22989734..22989874 1016..867 320 84 Minus
3L 28110227 3L 27115661..27115728 949..1016 250 91.2 Plus
2R 25286936 2R 1984296..1984392 867..962 240 85.6 Plus
3R 32079331 3R 3456401..3456472 892..963 240 88.9 Plus
2R 25286936 2R 929829..929891 977..913 230 93.8 Minus
Y 3667352 Y 1884493..1884595 1016..913 230 85.7 Minus
Y 3667352 Y 1889472..1889574 1016..913 230 85.7 Minus
Y 3667352 Y 1897095..1897197 1016..913 230 85.7 Minus
4 1348131 4 1008310..1008369 957..1016 225 91.7 Plus
2L 23513712 2L 22794705..22794758 818..871 195 90.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11799456..11800010 506..1060 2730 99.4 Plus
X 23527363 X 11796959..11797203 1..245 1225 100 Plus
X 23527363 X 11798954..11799093 242..381 700 100 Plus
X 23527363 X 11799159..11799287 382..510 630 99.2 Plus
4 1331231 4 317826..317980 860..1014 505 88.3 Plus
2R 25260384 2R 2971019..2971178 1016..860 490 88.1 Minus
3L 28103327 3L 26729343..26729495 864..1016 450 86.2 Plus
2R 25260384 2R 5468158..5468314 1016..860 425 84.7 Minus
2R 25260384 2R 4970863..4971008 1015..869 420 87.8 Minus
2R 25260384 2R 858209..858362 1013..860 410 86.4 Minus
2L 23513712 2L 22794728..22794881 860..1013 410 86.4 Plus
3L 28103327 3L 23683799..23683953 1016..860 405 85.9 Minus
2R 25260384 2R 3010400..3010502 1015..912 375 92.3 Minus
2L 23513712 2L 23001993..23002073 1016..936 330 93.8 Minus
3L 28103327 3L 27098377..27098458 935..1016 305 91.4 Plus
3R 31820162 3R 1635812..1635893 1016..935 305 91.4 Minus
2L 23513712 2L 22989734..22989818 1016..931 300 91.8 Minus
3R 31820162 3R 3007425..3007532 879..986 300 85.1 Plus
3L 28103327 3L 27108761..27108828 949..1016 250 91.1 Plus
2R 25260384 2R 929829..929891 977..913 240 93.8 Minus
2R 25260384 2R 5468283..5468336 872..819 240 96.2 Minus
3R 31820162 3R 3117839..3117910 892..963 240 88.8 Plus
4 1331231 4 1008310..1008369 957..1016 225 91.6 Plus
Y 3410481 Y 1996204..1996251 1016..969 210 95.8 Minus
Y 3410481 Y 1988581..1988628 1016..969 210 95.8 Minus
Y 3410481 Y 1983602..1983649 1016..969 210 95.8 Minus
2R 25260384 2R 1984347..1984392 917..962 200 95.6 Plus
2R 25260384 2R 858332..858385 871..818 195 90.7 Minus
2L 23513712 2L 22794705..22794758 818..871 195 90.7 Plus
3L 28103327 3L 27098461..27098508 1013..1061 175 93.8 Plus
Y 3410481 Y 1988471..1988518 1060..1013 165 89.5 Minus
Y 3410481 Y 1983492..1983539 1060..1013 165 89.5 Minus
3L 28103327 3L 23564539..23564575 1022..1058 155 94.5 Plus
3L 28103327 3L 23563626..23563662 963..999 155 94.5 Plus
2R 25260384 2R 929755..929802 1060..1013 150 87.5 Minus
3R 31820162 3R 3007563..3007610 1013..1060 150 87.5 Plus
Blast to na_te.dros performed on 2019-03-16 07:16:24 has no hits.

FI07728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:17:03 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11682029..11682166 244..381 100 -> Plus
chrX 11682232..11682355 382..505 100 -> Plus
chrX 11680022..11680264 1..243 100 -> Plus
chrX 11682529..11683081 506..1058 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:02 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 1..801 79..879 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:52:35 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 1..801 79..879 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:42 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RA 1..801 79..879 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:29:16 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 1..801 79..879 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-15 08:56:55 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 16..1073 1..1058 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:52:35 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 16..1073 1..1058 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:42 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RA 18..1075 1..1058 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:29:16 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
Karl-RB 18..1075 1..1058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:03 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
X 11788861..11789103 1..243 100 -> Plus
X 11790858..11790995 244..381 100 -> Plus
X 11791061..11791184 382..505 100 -> Plus
X 11791358..11791910 506..1058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:03 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
X 11788861..11789103 1..243 100 -> Plus
X 11790858..11790995 244..381 100 -> Plus
X 11791061..11791184 382..505 100 -> Plus
X 11791358..11791910 506..1058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:03 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
X 11788861..11789103 1..243 100 -> Plus
X 11790858..11790995 244..381 100 -> Plus
X 11791061..11791184 382..505 100 -> Plus
X 11791358..11791910 506..1058 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:42 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11682894..11683136 1..243 100 -> Plus
arm_X 11684891..11685028 244..381 100 -> Plus
arm_X 11685094..11685217 382..505 100 -> Plus
arm_X 11685391..11685943 506..1058 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:43:24 Download gff for FI07728.complete
Subject Subject Range Query Range Percent Splice Strand
X 11796959..11797201 1..243 100 -> Plus
X 11798956..11799093 244..381 100 -> Plus
X 11799159..11799282 382..505 100 -> Plus
X 11799456..11800008 506..1058 99   Plus

FI07728.hyp Sequence

Translation from 0 to 878

> FI07728.hyp
RNGDRASEPAGRSTTINNCSSPSSGLMERIMGRNGSLLLTAVLIIILDVL
LAPVGANLWTRHNSNAYQTRRRSGPSNRCPKVGAIKNFDLERMMGCWHVV
QYYASTEELPEYACMRSHFSFSKEDQHITMNFSYIFAEDPLREKLVGNIT
WMIPKFQEPGHWQHTEDIYEGIYNTYVLDTDYDTWGLVMHCAEKKKQPRY
LSALLLSRKTSLADNEISFLRGKLPQDIDTSFMFNIGQESCDNLMESSRD
DPLAYVVNGRKRAKEIFKIINKPDGRVRASSEARSYEQSEKL*

FI07728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Karl-PD 266 CG4139-PD 1..266 27..292 1411 100 Plus
Karl-PC 266 CG4139-PC 1..266 27..292 1411 100 Plus
Karl-PB 266 CG4139-PB 1..266 27..292 1411 100 Plus
Karl-PA 266 CG4139-PA 1..266 27..292 1411 100 Plus

FI07728.pep Sequence

Translation from 0 to 878

> FI07728.pep
RNGDRASEPAGRSTTINNCSSPSSGLMERIMGRNGSLLLTAVLIIILDVL
LAPVGANLWTRHNSNAYQTRRRSGPSNRCPKVGAIKNFDLERMMGCWHVV
QYYASTEELPEYACMRSHFSFSKEDQHITMNFSYIFAEDPLREKLVGNIT
WMIPKFQEPGHWQHTEDIYEGIYNTYVLDTDYDTWGLVMHCAEKKKQPRY
LSALLLSRKTSLADNEISFLRGKLPQDIDTSFMFNIGQESCDNLMESSRD
DPLAYVVNGRKRAKEIFKIINKPDGRVRASSEARSYEQSEKL*

FI07728.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20434-PA 243 GF20434-PA 1..242 31..272 1096 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18444-PA 247 GG18444-PA 1..246 27..272 1245 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24390-PA 244 GH24390-PA 30..244 60..273 830 70.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Karl-PD 266 CG4139-PD 1..266 27..292 1411 100 Plus
Karl-PC 266 CG4139-PC 1..266 27..292 1411 100 Plus
Karl-PB 266 CG4139-PB 1..266 27..292 1411 100 Plus
Karl-PA 266 CG4139-PA 1..266 27..292 1411 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15330-PA 226 GI15330-PA 33..226 81..273 825 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15152-PA 315 GL15152-PA 100..314 59..272 911 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17982-PA 314 GA17982-PA 99..313 59..272 905 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13108-PA 297 GM13108-PA 13..297 1..285 1512 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17049-PA 295 GD17049-PA 13..295 1..285 1372 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14768-PA 246 GJ14768-PA 27..246 55..273 871 71.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16319-PA 205 GK16319-PA 3..204 82..272 784 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15665-PA 247 GE15665-PA 1..246 27..272 1223 94.3 Plus