BDGP Sequence Production Resources |
Search the DGRC for FI08004
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 80 |
Well: | 4 |
Vector: | pOTB7 |
Associated Gene/Transcript | Ns1-RA |
Protein status: | FI08004.pep: gold |
Sequenced Size: | 2026 |
Gene | Date | Evidence |
---|---|---|
CG3983 | 2008-12-18 | 5.12 accounting |
2026 bp assembled on 2008-11-06
GenBank Submission: BT050580.1
> FI08004.complete CTTCGCAGAGGGTTCACAAAAACCAAATTACATCACACTGCCAGTCTGGC AACACTGGCAGTGTTGGCTAGCACGCCACAACAAGTGGCCACGCTTCGTG GTGACTGACAAAAAGTCAAGAAGAAGACTATTTTCACGTGTTCTTGTTTT AAGTCGGTTTTGATTCCGGTTATCCTCGTGTAAAATGGCTTTAAAAAGGT TGAAGACCAAGAAATCCAAGAGGCTCACCGGTCGCTTGAAGCACAAGATC GAAAAGAAGGTGCGGGACCACAACAAAAAGGAACGTCGCGCAGCCAAGAA GAATCCGAAGAAGGGTAGCAAGAAACAGAAGCTCATCCAGATCCCGAACA TCTGTCCCTTCAAGGATGACATCCTCAAGGAGGTGGAGGAGGCCAAGCAA CGTCAGGAGGCCGAACGTTTGGCTCGCCGCGAAGCCTTTAAGGCGGAACG CGAACAGAACAAGTTCAAGACGCTGGAGTCCATGGTCGAGGATGCAGACA TGCGGAGCACCGTGCACGGAATAATGCACGAAAACGATGCCCAGGATCAG GACGAAAAGAAGTACAAGAACGCCGTGACCAAAGAGCAGTCATTGAAGCA GTACTTCAAGGAATTCCGCAAGGTGATAGAAAATGCCGACGTTGTCCTGG AGGTGGTTGATGCACGTGACCCCCTGGGAACCCGCTGCAATGAAGTTGAG CGCGCCGTTCGCGGTGCTCCGGGCAACAAGCGACTGGTCCTGGTGCTCAA CAAAGCCGACCTGGTGCCGCGAGAGAATCTGAACAACTGGATCAAGTACT TCCGTCGCAGCGGACCTGTCACCGCCTTCAAGGCTTCCACACAGGATCAG GCCAACCGGCTGGGACGCCGCAAACTCCGCGAAATGAAAACCGAGAAGGC TATGCAGGGTTCTGTCTGTATTGGCGCTGAGTTGCTTATGTCCATGCTGG GCAACTACTGCCGCAACAAGGGCATCAAAACCTCGATTCGCGTTGGCGTC GTTGGAATTCCCAATGTAGGCAAGAGCTCCATCATAAACTCGTTGACCCG CGGCCGGTCCTGCATGGTGGGCAGCACGCCAGGAGTGACCAAGTCAATGC AAGAAGTAGAACTGGATTCAAAAATCAAACTGATCGATTGTCCTGGAATC GTATTTACCAGCGGAGGTGAAAATTCGCATGCAGTTCTGAAGAATGCTCA GCGTGTGGGCGATGTAAAGGATCCTTTCACCATTGCCGAGAGCGTATTGA AGCGTGCCAGCAAGGAATACTTCTGCACGATGTACGATATTACAAACTAC GACACATTTGAAGAATTCTTCGCCAAAAAGGCAGCCAGAATGGGCAAATT TCTAAAGAAGGGAGTTCCAGATGTTGTGGCTGCCGCAAGAAGCGTGCTCA ACGATTGGAACACGGGCAAAATCAAATACTGCACACAGCCTCCGGAAGTT CAAGAAGGACAAAGTGTGCATATAAGTGCCTCGATAGTACACTCAGAGGC TCGCGAATTTGATGTGGAGAACTTTGAGTCCATGGAGACGGAAATCTTAG AGCATTGCGCCGTGAAAACGGATGACATTATGGAGATAACGTCTACGGGG CCTTTAGAGATTCGACAGCCGCGTGAGGAAGCCGAACCTGCAGATAAAAT AACTGCCAGTTTGGTAATAGACGAGAAGGAAAAGCCCGCAAAGGGTCGCA AACGAAAACTGGATGAGGAAAAGGAGAAGGTTGATCCCAGTCTACTCCTA GAAGAAAACCAATCCCTGAATAAAGGCATAAAGCAGATGCAAAAGCTAAA AAAGAAACAGAATGTTCGCAACGAGAAGAAAATATCCAAAATTACAGACG TTCTGGATAGCTTTAGCTTAGGTCCATCCTCGTCCAAGGCAGAAAAATAC GATTTTGATGAGGACTATGTGATTGAATAAATTCTGCCTTAGTTTTAATA ATTAAATCTGTAGATAGTACACTATAATATAGAAAGGTGTAATGTCTCTG AAAAACTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 12896097..12896984 | 1094..207 | 4350 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 12895312..12895723 | 1754..1343 | 2015 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 12894990..12895244 | 2007..1753 | 1275 | 100 | Minus |
chr3R | 27901430 | chr3R | 12895785..12896035 | 1344..1094 | 1165 | 97.6 | Minus |
chr3R | 27901430 | chr3R | 12897049..12897254 | 206..1 | 1015 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 17071630..17072517 | 1094..207 | 4350 | 99.3 | Minus |
3R | 32079331 | 3R | 17070845..17071256 | 1754..1343 | 1970 | 98.5 | Minus |
3R | 32079331 | 3R | 17070521..17070777 | 2009..1753 | 1270 | 99.6 | Minus |
3R | 32079331 | 3R | 17071318..17071568 | 1344..1094 | 1180 | 98 | Minus |
3R | 32079331 | 3R | 17072582..17072787 | 206..1 | 1015 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 16812461..16813348 | 1094..207 | 4350 | 99.3 | Minus |
3R | 31820162 | 3R | 16811676..16812087 | 1754..1343 | 1970 | 98.5 | Minus |
3R | 31820162 | 3R | 16811352..16811608 | 2009..1753 | 1270 | 99.6 | Minus |
3R | 31820162 | 3R | 16812149..16812399 | 1344..1094 | 1180 | 98 | Minus |
3R | 31820162 | 3R | 16813413..16813618 | 206..1 | 1015 | 99.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12894990..12895242 | 1755..2007 | 100 | <- | Minus |
chr3R | 12895312..12895722 | 1344..1754 | 99 | <- | Minus |
chr3R | 12895786..12896036 | 1093..1343 | 97 | <- | Minus |
chr3R | 12896099..12896984 | 207..1092 | 99 | <- | Minus |
chr3R | 12897049..12897254 | 1..206 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3983-RA | 1..1746 | 185..1930 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ns1-RA | 1..1746 | 185..1930 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns1-RA | 1..1746 | 185..1930 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns1-RA | 1..1746 | 185..1930 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3983-RA | 1..2007 | 1..2007 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ns1-RA | 1..2007 | 1..2007 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns1-RA | 1..1895 | 113..2007 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3983-RB | 1..2007 | 1..2007 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns1-RA | 1..1895 | 113..2007 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17070845..17071255 | 1344..1754 | 98 | <- | Minus |
3R | 17070523..17070775 | 1755..2007 | 99 | <- | Minus |
3R | 17071319..17071569 | 1093..1343 | 97 | <- | Minus |
3R | 17071632..17072517 | 207..1092 | 99 | <- | Minus |
3R | 17072582..17072787 | 1..206 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17070845..17071255 | 1344..1754 | 98 | <- | Minus |
3R | 17070523..17070775 | 1755..2007 | 99 | <- | Minus |
3R | 17071319..17071569 | 1093..1343 | 97 | <- | Minus |
3R | 17071632..17072517 | 207..1092 | 99 | <- | Minus |
3R | 17072582..17072787 | 1..206 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17070845..17071255 | 1344..1754 | 98 | <- | Minus |
3R | 17070523..17070775 | 1755..2007 | 99 | <- | Minus |
3R | 17071319..17071569 | 1093..1343 | 97 | <- | Minus |
3R | 17071632..17072517 | 207..1092 | 99 | <- | Minus |
3R | 17072582..17072787 | 1..206 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12896245..12896497 | 1755..2007 | 99 | <- | Minus |
arm_3R | 12896567..12896977 | 1344..1754 | 98 | <- | Minus |
arm_3R | 12897041..12897291 | 1093..1343 | 97 | <- | Minus |
arm_3R | 12897354..12898239 | 207..1092 | 99 | <- | Minus |
arm_3R | 12898304..12898509 | 1..206 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16811354..16811606 | 1755..2007 | 99 | <- | Minus |
3R | 16811676..16812086 | 1344..1754 | 98 | <- | Minus |
3R | 16812150..16812400 | 1093..1343 | 97 | <- | Minus |
3R | 16812463..16813348 | 207..1092 | 99 | <- | Minus |
3R | 16813413..16813618 | 1..206 | 99 | Minus |
Translation from 184 to 1929
> FI08004.pep MALKRLKTKKSKRLTGRLKHKIEKKVRDHNKKERRAAKKNPKKGSKKQKL IQIPNICPFKDDILKEVEEAKQRQEAERLARREAFKAEREQNKFKTLESM VEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSLKQYFKEFRKVIEN ADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLN NWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAEL LMSMLGNYCRNKGIKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPG VTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTI AESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAA ARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESM ETEILEHCAVKTDDIMEITSTGPLEIRQPREEAEPADKITASLVIDEKEK PAKGRKRKLDEEKEKVDPSLLLEENQSLNKGIKQMQKLKKKQNVRNEKKI SKITDVLDSFSLGPSSSKAEKYDFDEDYVIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17911-PA | 581 | GF17911-PA | 1..581 | 1..581 | 2754 | 91.2 | Plus |
Dana\GF13248-PA | 676 | GF13248-PA | 161..479 | 93..426 | 489 | 34.5 | Plus |
Dana\GF21278-PA | 605 | GF21278-PA | 163..503 | 139..422 | 308 | 27.3 | Plus |
Dana\GF15352-PA | 575 | GF15352-PA | 140..413 | 121..348 | 193 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16794-PA | 581 | GG16794-PA | 1..581 | 1..581 | 3061 | 99.1 | Plus |
Dere\GG21043-PA | 674 | GG21043-PA | 161..493 | 93..440 | 488 | 33.7 | Plus |
Dere\GG12698-PA | 607 | GG12698-PA | 320..505 | 249..422 | 210 | 30.6 | Plus |
Dere\GG21249-PA | 575 | GG21249-PA | 140..494 | 121..424 | 202 | 24.2 | Plus |
Dere\GG12698-PA | 607 | GG12698-PA | 163..243 | 139..219 | 158 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18066-PA | 581 | GH18066-PA | 1..581 | 1..581 | 2510 | 84.3 | Plus |
Dgri\GH20960-PA | 682 | GH20960-PA | 161..479 | 93..426 | 484 | 35 | Plus |
Dgri\GH11875-PA | 611 | GH11875-PA | 162..517 | 139..430 | 246 | 25.2 | Plus |
Dgri\GH10880-PA | 570 | GH10880-PA | 166..412 | 141..348 | 198 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ns1-PA | 581 | CG3983-PA | 1..581 | 1..581 | 2956 | 100 | Plus |
Ns2-PA | 674 | CG6501-PA | 156..635 | 88..571 | 486 | 29.2 | Plus |
Ns3-PB | 606 | CG14788-PB | 163..506 | 139..424 | 291 | 26.7 | Plus |
Ns3-PA | 606 | CG14788-PA | 163..506 | 139..424 | 291 | 26.7 | Plus |
Ns4-PA | 575 | CG9320-PA | 140..494 | 121..424 | 177 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23744-PA | 583 | GI23744-PA | 1..583 | 1..581 | 2483 | 84.9 | Plus |
Dmoj\GI21297-PA | 678 | GI21297-PA | 161..480 | 93..427 | 492 | 35.5 | Plus |
Dmoj\GI15663-PA | 613 | GI15663-PA | 309..516 | 230..426 | 206 | 29.7 | Plus |
Dmoj\GI18253-PA | 574 | GI18253-PA | 145..475 | 124..405 | 184 | 24.3 | Plus |
Dmoj\GI15663-PA | 613 | GI15663-PA | 162..242 | 139..219 | 163 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21923-PA | 583 | GL21923-PA | 1..583 | 1..581 | 2646 | 87.5 | Plus |
Dper\GL10621-PA | 676 | GL10621-PA | 190..468 | 120..421 | 466 | 35 | Plus |
Dper\GL14378-PA | 602 | GL14378-PA | 163..504 | 139..426 | 309 | 26.3 | Plus |
Dper\GL18517-PA | 577 | GL18517-PA | 137..413 | 118..348 | 185 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26447-PA | 583 | GA26447-PA | 1..583 | 1..581 | 2606 | 87.5 | Plus |
Dpse\GA19643-PA | 676 | GA19643-PA | 190..468 | 120..421 | 466 | 35 | Plus |
Dpse\GA13246-PA | 602 | GA13246-PA | 163..504 | 139..426 | 310 | 26.3 | Plus |
Dpse\GA21698-PA | 577 | GA21698-PA | 137..413 | 118..348 | 185 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15388-PA | 581 | GM15388-PA | 1..581 | 1..581 | 3071 | 99.3 | Plus |
Dsec\GM19971-PA | 674 | GM19971-PA | 161..493 | 93..440 | 484 | 33.4 | Plus |
Dsec\GM18974-PA | 607 | GM18974-PA | 320..505 | 249..422 | 209 | 30.6 | Plus |
Dsec\GM23366-PA | 575 | GM23366-PA | 140..413 | 121..348 | 203 | 25.8 | Plus |
Dsec\GM18974-PA | 607 | GM18974-PA | 163..243 | 139..219 | 158 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20254-PA | 328 | GD20254-PA | 1..328 | 254..581 | 1731 | 98.8 | Plus |
Dsim\GD25465-PA | 674 | GD25465-PA | 161..493 | 93..440 | 490 | 33.7 | Plus |
Dsim\GD24278-PA | 575 | GD24278-PA | 140..413 | 121..348 | 203 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10591-PA | 581 | GJ10591-PA | 1..581 | 1..581 | 2539 | 84.5 | Plus |
Dvir\GJ20899-PA | 682 | GJ20899-PA | 161..479 | 93..426 | 492 | 34.8 | Plus |
Dvir\GJ19196-PA | 611 | GJ19196-PA | 162..510 | 139..422 | 270 | 26.4 | Plus |
Dvir\GJ17511-PA | 576 | GJ17511-PA | 166..501 | 141..426 | 194 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13906-PA | 579 | GK13906-PA | 1..579 | 1..581 | 2613 | 86.2 | Plus |
Dwil\GK21401-PA | 681 | GK21401-PA | 161..493 | 93..445 | 476 | 33.4 | Plus |
Dwil\GK10107-PA | 610 | GK10107-PA | 163..509 | 139..426 | 310 | 27.4 | Plus |
Dwil\GK14912-PA | 576 | GK14912-PA | 141..495 | 121..424 | 198 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26110-PA | 581 | GE26110-PA | 1..581 | 1..581 | 3052 | 99 | Plus |
Dyak\GE13986-PA | 674 | GE13986-PA | 161..493 | 93..440 | 490 | 33.7 | Plus |
Dyak\GE16528-PA | 572 | GE16528-PA | 320..470 | 249..422 | 194 | 31.6 | Plus |
Dyak\GE12344-PA | 575 | GE12344-PA | 140..522 | 121..453 | 194 | 23.4 | Plus |
Dyak\GE24007-PA | 323 | GE24007-PA | 31..206 | 141..323 | 160 | 27.8 | Plus |
Translation from 184 to 1929
> FI08004.hyp MALKRLKTKKSKRLTGRLKHKIEKKVRDHNKKERRAAKKNPKKGSKKQKL IQIPNICPFKDDILKEVEEAKQRQEAERLARREAFKAEREQNKFKTLESM VEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSLKQYFKEFRKVIEN ADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLN NWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAEL LMSMLGNYCRNKGIKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPG VTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTI AESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAA ARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESM ETEILEHCAVKTDDIMEITSTGPLEIRQPREEAEPADKITASLVIDEKEK PAKGRKRKLDEEKEKVDPSLLLEENQSLNKGIKQMQKLKKKQNVRNEKKI SKITDVLDSFSLGPSSSKAEKYDFDEDYVIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ns1-PA | 581 | CG3983-PA | 1..581 | 1..581 | 2956 | 100 | Plus |
Ns2-PA | 674 | CG6501-PA | 156..635 | 88..571 | 486 | 29.2 | Plus |
Ns3-PB | 606 | CG14788-PB | 163..506 | 139..424 | 291 | 26.7 | Plus |
Ns3-PA | 606 | CG14788-PA | 163..506 | 139..424 | 291 | 26.7 | Plus |
Ns4-PA | 575 | CG9320-PA | 140..494 | 121..424 | 177 | 24.2 | Plus |