Clone FI08027 Report

Search the DGRC for FI08027

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:80
Well:27
Vector:pOTB7
Associated Gene/TranscriptLS2-RA
Protein status:FI08027.pep: gold
Sequenced Size:1428

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3162 2008-08-15 Release 5.9 accounting
CG3162 2008-12-18 5.12 accounting

Clone Sequence Records

FI08027.complete Sequence

1428 bp assembled on 2008-08-14

GenBank Submission: BT044373.1

> FI08027.complete
CACCAACAAGGCCTGGTGTTCGGTGATTTTAGCTGAAAAGTATGAGACGT
TTTCGGCCCATGAATCGTTCTTGGAATGCTCTGCGTTCGCGTTCACGTTC
ACGTTCACGTTCGCGTTCGCCTTTCCGTTCGCAATCCATTACTCGATCCC
GGCCCACCCGTTCGGATACCATTTACACAGAGAGGACGCGATTGCAGCGA
CGTTTCAGTCGGCCTCCCTCCTCCTGGGACATTCCACCAGAGGGTTATAA
CCACCTGACTCCGCAACAGTACAAGGCCATGCTGGCCAGCGGCCAGATTG
CCTCGAGGATTCTTTCCGATGGCGTACACGGGGGCGAGTCCGCCGCGATT
TCGATGATCACTCGACAAGCTCGCCGCCTGTATGTGGGTAATATTCCATT
CGGAGTTACGGATGAGGAGATGATGCAGTTCTTCAATCATCAGATCATGG
CTCTGGGATTTGAAGCAAAAAGCTCGCACTACATGGATGGCAATGCTGTG
CTGACCTGCCAAACGAATCTGGAGAAGAACTTTGCCTTTCTGGAATTCCG
ATCCATTGACGAGGCCAGCCAGGCCTTGAATTTCGATGGGATGGTCTTCC
GTGGACAAACCTTGAAGATAAGACGGCCACACGACTATCAGCCAGTGCCC
TCGATTTCAGTCTCTGCAATGGAGAGCTACAGGTCATTCAGGGTCCCTGC
CATCAATGTAGCCCAACAACCGGCTGTTACCCTTCCTGTGACCACTATTG
TCCCCGATTCCCCCAATAAGATCTACGTAGGTGGCTTGCCCACCTGCCTG
AATCAGGATCAGGTCAAGGAACTGCTGCAGTCGTTTGGAGAACTGAAAGG
ACTGAATCTGGTGATGGATACCAACACGAACCTGAACAAGGGTTTCGCCT
TCTTTGAGTACTGCGATCCCTCGGTTACCGATCACGCCATAGCTGGATTG
CACGGCATGCTGCTGGGGGATCGCAGGCTGGTGGTCCAGAGATCTATTCC
AGGCGGAAAGAACGCATTCCCCGGCCACTTACCAACCGTTCTTCAGGTAC
CGGGCATATCCACACTACAAGATCCTGGCTCACCTACCGAAACTCTCTGC
CTGCTGAACATGGTGCGGCCGGAGGAGCTGCTGGACGACGAGGAGTTCGA
GGACATTCGCACGGACATCAAGCAGGAGTGCGCCAAGTTCGGCGAGGTTC
GCAGCATCAAGATTCCGCGTCCCATCGGTCAATTTCCGAAGCGGGGCTGT
GGCAAGGTCTTCGTCCAGTTCGAATCCGTGGAGGATTCGCAGAAGGCCCT
TAAGGCATTGAGTGGTCGCAAGTTCAGCGGGCGCATAGTGATGACCTCGT
ATTACGATCCCGAAAAGTACCTGGCGGATGATCTACAATAAAGTCGAAAT
ATTAACCATAAAAAAAAAAAAAAAAAAA

FI08027.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3162-RA 1415 CG3162-RA 1..1405 1..1405 6995 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19096534..19097938 1405..1 6980 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:20:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23210135..23211539 1405..1 6995 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23211334..23212738 1405..1 6995 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 15:33:38 has no hits.

FI08027.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:34:23 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19096529..19097938 1..1409 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:57:30 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1350 42..1391 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:48 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1350 42..1391 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:42 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
LS2-RA 1..1350 42..1391 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:00 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1350 42..1391 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:21 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
LS2-RA 1..1350 42..1391 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:35:56 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1410 1..1409 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:48 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1410 1..1409 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:42 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
LS2-RA 1..1410 1..1409 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-14 11:28:48 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
CG3162-RA 1..1410 1..1409 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:21 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
LS2-RA 1..1410 1..1409 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:23 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23210130..23211539 1..1409 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:23 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23210130..23211539 1..1409 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:23 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23210130..23211539 1..1409 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:42 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19097653..19099062 1..1409 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:38:26 Download gff for FI08027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23211347..23212756 1..1409 99   Minus

FI08027.pep Sequence

Translation from 41 to 1390

> FI08027.pep
MRRFRPMNRSWNALRSRSRSRSRSRSPFRSQSITRSRPTRSDTIYTERTR
LQRRFSRPPSSWDIPPEGYNHLTPQQYKAMLASGQIASRILSDGVHGGES
AAISMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDG
NAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQ
PVPSISVSAMESYRSFRVPAINVAQQPAVTLPVTTIVPDSPNKIYVGGLP
TCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAI
AGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE
TLCLLNMVRPEELLDDEEFEDIRTDIKQECAKFGEVRSIKIPRPIGQFPK
RGCGKVFVQFESVEDSQKALKALSGRKFSGRIVMTSYYDPEKYLADDLQ*

FI08027.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13310-PA 434 GF13310-PA 11..434 19..449 1416 68.5 Plus
Dana\GF19596-PA 416 GF19596-PA 39..411 57..443 1148 57.4 Plus
Dana\GF25032-PA 643 GF25032-PA 130..303 112..319 159 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20057-PA 440 GG20057-PA 36..440 42..449 1740 79.4 Plus
Dere\GG19328-PA 416 GG19328-PA 39..411 57..443 1144 57.1 Plus
Dere\GG14596-PA 731 GG14596-PA 225..398 112..319 163 25.4 Plus
Dere\GG11065-PA 200 GG11065-PA 103..194 347..443 153 38.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23055-PA 453 GH23055-PA 43..453 25..449 1204 56.6 Plus
Dgri\GH12033-PA 416 GH12033-PA 39..411 57..443 1138 56.6 Plus
Dgri\GH15204-PA 643 GH15204-PA 133..306 112..319 163 25.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
LS2-PA 449 CG3162-PA 1..449 1..449 2332 100 Plus
U2af50-PB 427 CG9998-PB 14..422 12..443 1130 54.9 Plus
U2af50-PD 416 CG9998-PD 6..411 15..443 1129 55.1 Plus
U2af50-PA 416 CG9998-PA 6..411 15..443 1129 55.1 Plus
U2af50-PC 360 CG9998-PC 2..355 76..443 1036 57.6 Plus
hfp-PJ 545 CG12085-PJ 39..212 112..319 162 25.4 Plus
hfp-PI 545 CG12085-PI 39..212 112..319 162 25.4 Plus
hfp-PH 545 CG12085-PH 39..212 112..319 162 25.4 Plus
hfp-PG 545 CG12085-PG 39..212 112..319 162 25.4 Plus
hfp-PF 545 CG12085-PF 39..212 112..319 162 25.4 Plus
hfp-PE 545 CG12085-PE 39..212 112..319 162 25.4 Plus
hfp-PB 545 CG12085-PB 39..212 112..319 162 25.4 Plus
hfp-PD 545 CG12085-PD 39..212 112..319 162 25.4 Plus
hfp-PC 545 CG12085-PC 39..212 112..319 162 25.4 Plus
hfp-PA 637 CG12085-PA 131..304 112..319 162 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21125-PA 427 GI21125-PA 28..427 38..449 1334 62.6 Plus
Dmoj\GI14308-PA 416 GI14308-PA 39..411 57..443 1138 56.6 Plus
Dmoj\GI16722-PA 616 GI16722-PA 110..283 112..319 166 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11290-PA 487 GL11290-PA 59..487 48..448 1184 53.9 Plus
Dper\GL15893-PA 418 GL15893-PA 33..413 50..443 1147 57 Plus
Dper\GL22585-PA 653 GL22585-PA 131..304 112..319 161 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16338-PA 491 GA16338-PA 63..491 48..448 1182 54.5 Plus
Dpse\GA22177-PA 418 GA22177-PA 33..413 50..443 1147 57 Plus
Dpse\GA11385-PA 653 GA11385-PA 131..304 112..319 161 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15574-PA 445 GM15574-PA 1..445 1..449 1958 89.3 Plus
Dsec\GM13406-PA 416 GM13406-PA 39..411 57..443 1144 57.1 Plus
Dsec\GM14211-PA 616 GM14211-PA 110..283 112..319 159 25.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25073-PA 445 GD25073-PA 1..445 1..449 1955 89.3 Plus
Dsim\GD24494-PA 416 GD24494-PA 39..411 57..443 1144 57.1 Plus
Dsim\GD13472-PA 541 GD13472-PA 110..283 112..319 163 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20975-PA 428 GJ20975-PA 25..428 35..449 1366 63.6 Plus
Dvir\GJ19364-PA 476 GJ19364-PA 283..471 258..443 588 60.3 Plus
Dvir\GJ19364-PA 476 GJ19364-PA 39..245 57..279 558 50.4 Plus
Dvir\GJ12466-PA 645 GJ12466-PA 144..317 112..319 167 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19586-PA 466 GK19586-PA 61..461 35..443 1279 61.3 Plus
Dwil\GK10063-PA 416 GK10063-PA 39..411 57..443 1149 57.4 Plus
Dwil\GK17204-PA 631 GK17204-PA 111..284 112..319 162 25.4 Plus
Dwil\GK23713-PA 443 GK23713-PA 324..437 325..443 159 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11595-PA 437 GE11595-PA 33..437 42..449 1774 80.4 Plus
Dyak\GE15975-PA 416 GE15975-PA 39..411 57..443 1144 57.1 Plus
Dyak\GE20955-PA 637 GE20955-PA 131..304 112..319 160 25.4 Plus

FI08027.hyp Sequence

Translation from 41 to 1390

> FI08027.hyp
MRRFRPMNRSWNALRSRSRSRSRSRSPFRSQSITRSRPTRSDTIYTERTR
LQRRFSRPPSSWDIPPEGYNHLTPQQYKAMLASGQIASRILSDGVHGGES
AAISMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDG
NAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQ
PVPSISVSAMESYRSFRVPAINVAQQPAVTLPVTTIVPDSPNKIYVGGLP
TCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAI
AGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE
TLCLLNMVRPEELLDDEEFEDIRTDIKQECAKFGEVRSIKIPRPIGQFPK
RGCGKVFVQFESVEDSQKALKALSGRKFSGRIVMTSYYDPEKYLADDLQ*

FI08027.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
LS2-PA 449 CG3162-PA 1..449 1..449 2332 100 Plus
U2af50-PB 427 CG9998-PB 14..422 12..443 1130 54.9 Plus
U2af50-PD 416 CG9998-PD 6..411 15..443 1129 55.1 Plus
U2af50-PA 416 CG9998-PA 6..411 15..443 1129 55.1 Plus
U2af50-PC 360 CG9998-PC 2..355 76..443 1036 57.6 Plus