Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI08143.complete Sequence
908 bp assembled on 2008-07-28
GenBank Submission: BT044393.1
> FI08143.complete
GCAGCACGCACCGTTTGGAATTCAAAATTTCCGTATAAAAACACAAAGTA
TACAAATTTAGTTTAAGATTTGGCACATTAAAATTTTTTGCTAATGGATA
TTTCCAAGGCCGAGAGTCAAACGCCCGCCGGAGATCGTCGATCTGCGAGT
CCTGATTATCTGAGAACTCTGCTGCAGGACATCCTGTGTTTCCTGGTCCT
GCTCTCGGTGGCCTTGCTAATTGTGGCTGGCATTTTGTTTGTGGTGGAGG
ACGTAAGCCGGCTCCAGCAGCAGCACCAACACCAGCCGTACCACCACCAC
CATCATCGCCACATGCGTCCGGATCAGATAGCCAATGAACTAAAAGGATC
GCCGATCGAGGAGGCACCGAGGGAGCAAGGTCAAGTCTTCCGACCGCACA
CATGGATTCGATTCTTTAACTGCAGGAACAAGGTGCCACAGCAACAGCAG
GAAAAAGTTGAAAGGGAGGCGGTTCAGTTTGGCCCACCAACGCAAGACGA
TCAGGCGCAGCAGATCCCATTAGATGCCGTTCAAACTTATCGCCCTGCCA
TAGAACCTATATCGCTGCGCTCTGGCGGAGATTACATAGATGAAACGATC
AACAAAAACCCGAATCCGGAACTTCGCCATTTTCTGCCCAATAATATTAT
GATCTAAAAGAATATGTCTAAAATGCTGTTTGAATGTCCAAATTGACCGC
TTGGCAGCTTCCAACTATCGGGTCTCTCCTGGTAGATTTGTCATTTGATG
TTTAGCATAGCATTTGCACCTTTTGAACAGTGGGCCATCAAGAGACTAGA
ACATTCCCCAACCTAATGTTTTCGCAGATAGCAAACATGCTGAATTGTGC
AATTAATAAAAGAATAGCTATGCTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
FI08143.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1288-RA | 1085 | CG1288-RA | 92..967 | 1..876 | 4380 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 3033814..3034457 | 644..1 | 3205 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 3033529..3033762 | 874..641 | 1170 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:20:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7207760..7208403 | 644..1 | 3205 | 99.8 | Minus |
3R | 32079331 | 3R | 7207473..7207708 | 876..641 | 1180 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 6948591..6949234 | 644..1 | 3205 | 99.8 | Minus |
3R | 31820162 | 3R | 6948304..6948539 | 876..641 | 1180 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 15:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 265..327 | 135 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6888 | 265..311 | 129 | 78.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2503 | 265..311 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2398 | 259..311 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 265..327 | 117 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2434 | 259..344 | 115 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 265..313 | 112 | 72 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6795 | 265..326 | 112 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6822 | 265..311 | 109 | 70.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3373 | 259..345 | 108 | 59.8 | Plus |
FI08143.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:34:12 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 3033529..3033762 | 641..874 | 100 | <- | Minus |
chr3R | 3033818..3034457 | 1..640 | 92 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:58:15 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 1..564 | 94..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:04:17 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 1..564 | 94..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:18 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 1..564 | 94..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:18:13 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 1..564 | 94..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:01 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 1..564 | 94..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:24:35 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 13..886 | 1..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:04:17 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 13..886 | 1..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:18 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 13..886 | 1..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-28 11:45:14 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 13..886 | 1..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:01 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1288-RA | 29..902 | 1..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:12 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7207475..7207708 | 641..874 | 100 | <- | Minus |
3R | 7207764..7208403 | 1..640 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:12 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7207475..7207708 | 641..874 | 100 | <- | Minus |
3R | 7207764..7208403 | 1..640 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:12 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7207475..7207708 | 641..874 | 100 | <- | Minus |
3R | 7207764..7208403 | 1..640 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:18 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3033197..3033430 | 641..874 | 100 | <- | Minus |
arm_3R | 3033486..3034125 | 1..640 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:32:39 Download gff for
FI08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6948306..6948539 | 641..874 | 100 | <- | Minus |
3R | 6948595..6949234 | 1..640 | 100 | | Minus |
FI08143.hyp Sequence
Translation from 93 to 656
> FI08143.hyp
MDISKAESQTPAGDRRSASPDYLRTLLQDILCFLVLLSVALLIVAGILFV
VEDVSRLQQQHQHQPYHHHHHRHMRPDQIANELKGSPIEEAPREQGQVFR
PHTWIRFFNCRNKVPQQQQEKVEREAVQFGPPTQDDQAQQIPLDAVQTYR
PAIEPISLRSGGDYIDETINKNPNPELRHFLPNNIMI*
FI08143.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1288-PB | 187 | CG1288-PB | 1..187 | 1..187 | 991 | 100 | Plus |
CG1288-PA | 187 | CG1288-PA | 1..187 | 1..187 | 991 | 100 | Plus |
FI08143.pep Sequence
Translation from 93 to 656
> FI08143.pep
MDISKAESQTPAGDRRSASPDYLRTLLQDILCFLVLLSVALLIVAGILFV
VEDVSRLQQQHQHQPYHHHHHRHMRPDQIANELKGSPIEEAPREQGQVFR
PHTWIRFFNCRNKVPQQQQEKVEREAVQFGPPTQDDQAQQIPLDAVQTYR
PAIEPISLRSGGDYIDETINKNPNPELRHFLPNNIMI*
FI08143.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF17317-PA | 189 | GF17317-PA | 1..164 | 1..166 | 338 | 46.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG25326-PA | 185 | GG25326-PA | 1..183 | 1..185 | 676 | 79.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1288-PB | 187 | CG1288-PB | 1..187 | 1..187 | 991 | 100 | Plus |
CG1288-PA | 187 | CG1288-PA | 1..187 | 1..187 | 991 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12193-PA | 167 | GL12193-PA | 1..101 | 1..117 | 171 | 33.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA26221-PA | 167 | GA26221-PA | 1..101 | 1..117 | 171 | 35.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10500-PA | 188 | GM10500-PA | 1..188 | 1..187 | 766 | 88.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19496-PA | 187 | GD19496-PA | 1..187 | 1..187 | 803 | 91.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11121-PA | 179 | GE11121-PA | 1..177 | 1..185 | 655 | 81.1 | Plus |
Dyak\GE25807-PA | 179 | GE25807-PA | 1..177 | 1..185 | 655 | 81.1 | Plus |