FI08233.complete Sequence
756 bp assembled on 2008-07-29
GenBank Submission: BT044394.1
> FI08233.complete
TTTAGAGATAATCAAAATTAGCTGTTTTCATTTTCGTAAGCATGGACATT
AACCCAATAATCAGATCTATTCTCAGCCGCTTCAGAGGCTGCACCATCAG
AAGTTATCTGGTTGTTCTGCCCGATCAGAGTCGCATAGAAAATCAACTAA
AACTGGAGGATCTGCAAACAGAACGCGGAATCTTGGATCTGCAATCCCAT
GAGCTGGCACTCAAGCAAAAGCGCGTCGAGGCCAATCTAACCGACCTGAC
CCGCTGCATCCGTGGCATGGAGTTCGATGTGAAGGTGAATTCCAATCGCG
AGAGGAAGGAGAGAAAATCTGATCGACGCCCCCCAGCTGATAAGAAATCA
CCCAAAGTCGGTGATTTCAGCGAATAGCAAAATCCCCCCGGGTGCTTCCC
AATCCCAAGGGCATACGAGTGCAGCGTATAAAAACAAGCTATTGCCGGAG
GTCGGCATTCAGATTCACTTGAGATTGCCAACCATGAAGCTGATCGCATT
GTGCTGCCTGCTCCTTTTGGGCCTCCTGGGCTTCCTAGCTGCTCCCGGCG
TCGCCTCGCCATCTCGCCACACTGGACCAGGAAACGGATCGGGATCTGGA
GCTGGGTCCGGAAATCCGTTCAGGTCTCCAAGCTCACAGCAACGACCACT
GTACTACGACGCTCCGATTGGGAAACCATCGAAGACTATGTACGCCTGAC
GTAAAGAATGAAACAATAAAGATTTGAAACGCCTAAACTAAAAAAAAAAA
AAAAAA
FI08233.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM18-RA | 739 | IM18-RA | 1..739 | 1..739 | 3680 | 99.8 | Plus |
CG10332-RA | 739 | CG10332-RA | 1..739 | 1..739 | 3680 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19487161..19487726 | 739..174 | 2815 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 19487921..19488020 | 100..1 | 485 | 99 | Minus |
chr2R | 21145070 | chr2R | 19487797..19487869 | 171..99 | 350 | 98.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:20:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23600911..23601482 | 742..171 | 2860 | 100 | Minus |
2R | 25286936 | 2R | 23601674..23601773 | 100..1 | 500 | 100 | Minus |
2R | 25286936 | 2R | 23601550..23601622 | 171..99 | 350 | 98.6 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23602110..23602681 | 742..171 | 2860 | 100 | Minus |
2R | 25260384 | 2R | 23602873..23602972 | 100..1 | 500 | 100 | Minus |
2R | 25260384 | 2R | 23602749..23602821 | 171..99 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2019-03-16 10:52:32 has no hits.
FI08233.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:53:35 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19487161..19487729 | 171..739 | 99 | <- | Minus |
chr2R | 19487798..19487867 | 101..170 | 98 | <- | Minus |
chr2R | 19487921..19488020 | 1..100 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:58:20 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..336 | 42..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:34 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..336 | 42..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:04:36 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..336 | 42..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:18:56 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..336 | 42..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:10 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..336 | 42..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:36 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM18-RA | 1..739 | 1..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:34 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..739 | 1..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:36 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10332-RA | 1..739 | 1..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-29 13:44:47 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM18-RA | 1..739 | 1..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:10 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM18-RA | 1..739 | 1..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:35 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600914..23601482 | 171..739 | 100 | <- | Minus |
2R | 23601551..23601620 | 101..170 | 98 | <- | Minus |
2R | 23601674..23601773 | 1..100 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:35 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600914..23601482 | 171..739 | 100 | <- | Minus |
2R | 23601551..23601620 | 101..170 | 98 | <- | Minus |
2R | 23601674..23601773 | 1..100 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:35 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600914..23601482 | 171..739 | 100 | <- | Minus |
2R | 23601551..23601620 | 101..170 | 98 | <- | Minus |
2R | 23601674..23601773 | 1..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:36 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19488437..19489005 | 171..739 | 100 | <- | Minus |
arm_2R | 19489074..19489143 | 101..170 | 98 | <- | Minus |
arm_2R | 19489197..19489296 | 1..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:38:08 Download gff for
FI08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602131..23602699 | 171..739 | 100 | <- | Minus |
2R | 23602768..23602837 | 101..170 | 98 | <- | Minus |
2R | 23602891..23602990 | 1..100 | 100 | | Minus |
FI08233.pep Sequence
Translation from 41 to 376
> FI08233.pep
MDINPIIRSILSRFRGCTIRSYLVVLPDQSRIENQLKLEDLQTERGILDL
QSHELALKQKRVEANLTDLTRCIRGMEFDVKVNSNRERKERKSDRRPPAD
KKSPKVGDFSE*
FI08233.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11833-PA | 191 | GF11833-PA | 1..122 | 3..109 | 293 | 51.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG20013-PA | 109 | GG20013-PA | 1..109 | 1..111 | 440 | 79.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10332-PA | 111 | CG10332-PA | 1..111 | 1..111 | 561 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15525-PA | 111 | GM15525-PA | 1..111 | 1..111 | 536 | 92.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25030-PA | 111 | GD25030-PA | 1..111 | 1..111 | 527 | 91 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11550-PA | 109 | GE11550-PA | 1..109 | 1..111 | 447 | 80.2 | Plus |
FI08233.hyp Sequence
Translation from 41 to 376
> FI08233.hyp
MDINPIIRSILSRFRGCTIRSYLVVLPDQSRIENQLKLEDLQTERGILDL
QSHELALKQKRVEANLTDLTRCIRGMEFDVKVNSNRERKERKSDRRPPAD
KKSPKVGDFSE*
FI08233.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10332-PA | 111 | CG10332-PA | 1..111 | 1..111 | 561 | 100 | Plus |