Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI09011.complete Sequence
2209 bp assembled on 2008-08-28
GenBank Submission: BT044416.1
> FI09011.complete
AAACAACTTAAATGTGATTAATTTTGCAACTAAATCTGGACAAGTGAGTT
GTTACGACATCGGTGCACCAAGTAAAGTTGTCTAACCCAAAATTTTCCCA
GATAAAACGGCGAAAAACAAGTCAACTAAGAGAAGTTCTCTTCTTCAACG
CCGATCTTCGCTCCAACATTTGCAACATTGATGGGGTTTTTTTTGTTTAA
AAACATAGTTCGCAATTCTGATAAATTATTCGGAAATAAAACTCCAACTA
GAGTTTCGCTATTGTCCAGATTTTGTGGCACTTCCTTGGCTGGTAAAATG
GAGAAGGTTTATTTGAGAAATGCAAGTGATACCAAAGAATTGGACATTGT
GTTTCGCTTTGTGAATGAGAATTTGAAAATAAACCGGGAATTCAATTTCC
GTCGCCAGATGAATGAGCCCATTGATGCGATATTGGCCAGGATTCAGAGT
AATATTATTGGCAGGCTTGCAAAGTCCTGCAAAAAATCAAAAATCAAACC
GCCGGCAGAAATCAATGTTAAACTTCTGAGTGACAAATATGGTGAAAAAT
TCAATGAATTAACATTTGAGGATCTAGTCGTCACCCAAGATATCAGCAAT
GTAAAACTGCAGGTATTAGATACGGTCTACGATTTGGTGTTCAATCCACC
GTGGATTTCATCCCTAAAATTTTTGCCCTCATGCATATTGGCAGGATTTG
TAATATACCCCACCAATGTTCAGATACAATTCGGAGAACGTCAGTTCAGC
AAAGCAGTTTGGTTCAAGGCCAAAAAGCCCACAGACACCGATTGGGAGGT
GTGCGGAGAAGGATTTCAATATCTAGTGACTCCTGAGGATATTGGTTACC
ATTTGAAGTTCGTGGTGACGCCGGGTAATGCACTGGGAATGACGGGTCCT
GTGGTGGAGAAGATAACCAACTCTGCAGTGCAGGAATCTCCCGGGCGTTG
TCCATTCCAAGATCGCCAAAGGCACACCACGAATTCTTTGAGCGAATCGA
ATGAAATTCGTGTGGTGTCTTACAATTTGTTGGCCGATTTATATGCCAGT
AGTGACTATGCCGGTAGCACTCTGTTCTCCTATTGCCCGGCAAAGTATCT
GCAAATAGACTATAGGAAGCCACTGTTCATCAACGAGATCATCGGTTATA
ACTCCGATATTCTCTGTCTACAAGAAGTCGATCAGCGAATATTTGATTTT
GATTTAAAGGAAATTCTAGAACAACCGCCGTATAACTATCACGGCATAAT
GGCCCCGAAAGGCAAATGCGCTGAGGGAGTGGCAATTTTCTTTCGGAACT
CGCGCTTCGATCTCTTGGATTCTCAAATCCTGCATTTGGGGTCCAATATT
CCCGCACTGCCCGTATTTGAAAGCCTTTGGAATAAGATCAAAGTTAACGC
ACAATTAGCAGAACGAATCTGTGAACGGTCCACCACTCTGCAAACTTGTT
TGCTTAGAATAAAGGGTACCGATAACTACGTTCTGGTGGCCAACACGCAT
TTATATTTCCATCCGGATGCAGATCACATTCGCCTGCTGCAAATGGGATT
TTCCATGCTATTCGTAGAGCAATCTATTAGCAAAGCTATAAAGGACTTTA
ACATAAGTAGCCACAAAAACATTGGACTAATATTTTGTGGCGATTTCAAT
AGCGTTCCCGAGTGTGGAATCTACAAGCTGATGACGGAGCAGCTCGCCGA
AAAAACACTGGAGGACTGGCAAAGTAATGCCGAGCAGGCGGTTTCGAATG
TGGAACTCGCGCAGCCTTTCAAAATGGCATCAGCCTATGGGGCACCGGAA
TATACCCACTACACCACCCTCTTTGCGGGTTGCTTGGACTATGTGTTCTA
CCAAAACGATCGCTTCGAAGTTCTAAAGGTGGTGCCACTGCCAACGGAGG
AGGAGTTGAAAGCCAATACTGCGATACCATCGGCTGTTTTTCCATCCGAT
CATGTTGCTCTTGTAGCAGATCTCAAATTTAAGTCAGATTGATAAATTTT
TGGGCTTGCATATAAGAAAAATTAAGAATATCTCGGGGATTTCTCAGCAT
AAATAAATGTATACGTATGCCAAATACTATGCTTAAATGTAATAATACTC
ATTTCTTCTTTATATACAAAACAAAATTCGTTCAACAAATCCTGGCCTAT
TAACAAATGCTTCTTCTCCTTTATAAACTGTGGCATATAAACAAAAAAAA
AAAAAAAAA
FI09011.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31759-RC | 2192 | CG31759-RC | 1..2192 | 1..2192 | 10960 | 100 | Plus |
CG31759.a | 3077 | CG31759.a | 336..2439 | 102..2205 | 10505 | 99.9 | Plus |
CG31759-RD | 2324 | CG31759-RD | 336..2324 | 102..2090 | 9945 | 100 | Plus |
CG31759.a | 3077 | CG31759.a | 293..335 | 1..43 | 215 | 100 | Plus |
CG31759-RD | 2324 | CG31759-RD | 293..335 | 1..43 | 215 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 12206565..12208756 | 1..2192 | 10480 | 98.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:21:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12207919..12210123 | 1..2205 | 11010 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12207919..12210123 | 1..2205 | 11010 | 99.9 | Plus |
Blast to na_te.dros performed on 2019-03-16 06:52:44 has no hits.
FI09011.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:53:31 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 12206565..12208756 | 1..2192 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:59:29 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RD | 1..1695 | 298..1992 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:11:40 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RD | 1..1695 | 298..1992 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:33:51 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..1695 | 298..1992 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:53 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RD | 1..1695 | 298..1992 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:22:08 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..1695 | 298..1992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:09:02 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..2192 | 1..2192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:11:40 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..2192 | 1..2192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:51 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..2192 | 1..2192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-28 18:06:00 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..2192 | 1..2192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:22:08 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31759-RC | 1..2192 | 1..2192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:31 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12207919..12210110 | 1..2192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:31 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12207919..12210110 | 1..2192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:31 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12207919..12210110 | 1..2192 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:51 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12207919..12210110 | 1..2192 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:41:59 Download gff for
FI09011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12207919..12210110 | 1..2192 | 100 | | Plus |
FI09011.hyp Sequence
Translation from 180 to 1991
> FI09011.hyp
MGFFLFKNIVRNSDKLFGNKTPTRVSLLSRFCGTSLAGKMEKVYLRNASD
TKELDIVFRFVNENLKINREFNFRRQMNEPIDAILARIQSNIIGRLAKSC
KKSKIKPPAEINVKLLSDKYGEKFNELTFEDLVVTQDISNVKLQVLDTVY
DLVFNPPWISSLKFLPSCILAGFVIYPTNVQIQFGERQFSKAVWFKAKKP
TDTDWEVCGEGFQYLVTPEDIGYHLKFVVTPGNALGMTGPVVEKITNSAV
QESPGRCPFQDRQRHTTNSLSESNEIRVVSYNLLADLYASSDYAGSTLFS
YCPAKYLQIDYRKPLFINEIIGYNSDILCLQEVDQRIFDFDLKEILEQPP
YNYHGIMAPKGKCAEGVAIFFRNSRFDLLDSQILHLGSNIPALPVFESLW
NKIKVNAQLAERICERSTTLQTCLLRIKGTDNYVLVANTHLYFHPDADHI
RLLQMGFSMLFVEQSISKAIKDFNISSHKNIGLIFCGDFNSVPECGIYKL
MTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYTHYTTLFAG
CLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKF
KSD*
FI09011.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31759-PD | 564 | CG31759-PD | 1..564 | 40..603 | 2946 | 100 | Plus |
CG31759-PC | 564 | CG31759-PC | 1..564 | 40..603 | 2946 | 100 | Plus |
twin-PB | 545 | CG31137-PB | 187..527 | 278..599 | 299 | 27.9 | Plus |
twin-PF | 552 | CG31137-PF | 194..534 | 278..599 | 299 | 27.9 | Plus |
twin-PD | 358 | CG31137-PD | 3..340 | 281..599 | 295 | 27.9 | Plus |
FI09011.pep Sequence
Translation from 180 to 1991
> FI09011.pep
MGFFLFKNIVRNSDKLFGNKTPTRVSLLSRFCGTSLAGKMEKVYLRNASD
TKELDIVFRFVNENLKINREFNFRRQMNEPIDAILARIQSNIIGRLAKSC
KKSKIKPPAEINVKLLSDKYGEKFNELTFEDLVVTQDISNVKLQVLDTVY
DLVFNPPWISSLKFLPSCILAGFVIYPTNVQIQFGERQFSKAVWFKAKKP
TDTDWEVCGEGFQYLVTPEDIGYHLKFVVTPGNALGMTGPVVEKITNSAV
QESPGRCPFQDRQRHTTNSLSESNEIRVVSYNLLADLYASSDYAGSTLFS
YCPAKYLQIDYRKPLFINEIIGYNSDILCLQEVDQRIFDFDLKEILEQPP
YNYHGIMAPKGKCAEGVAIFFRNSRFDLLDSQILHLGSNIPALPVFESLW
NKIKVNAQLAERICERSTTLQTCLLRIKGTDNYVLVANTHLYFHPDADHI
RLLQMGFSMLFVEQSISKAIKDFNISSHKNIGLIFCGDFNSVPECGIYKL
MTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYTHYTTLFAG
CLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKF
KSD*
FI09011.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31759-PD | 564 | CG31759-PD | 1..564 | 40..603 | 2946 | 100 | Plus |
CG31759-PC | 564 | CG31759-PC | 1..564 | 40..603 | 2946 | 100 | Plus |
twin-PB | 545 | CG31137-PB | 187..527 | 278..599 | 299 | 27.9 | Plus |
twin-PF | 552 | CG31137-PF | 194..534 | 278..599 | 299 | 27.9 | Plus |
twin-PE | 552 | CG31137-PE | 194..534 | 278..599 | 299 | 27.9 | Plus |
twin-PA | 552 | CG31137-PA | 194..534 | 278..599 | 299 | 27.9 | Plus |
twin-PC | 567 | CG31137-PC | 209..549 | 278..599 | 299 | 27.9 | Plus |
twin-PD | 358 | CG31137-PD | 3..340 | 281..599 | 295 | 27.9 | Plus |
cu-PH | 419 | CG31299-PH | 84..385 | 272..599 | 213 | 27.6 | Plus |
cu-PF | 441 | CG31299-PF | 106..407 | 272..599 | 213 | 27.6 | Plus |
cu-PE | 446 | CG31299-PE | 111..412 | 272..599 | 213 | 27.6 | Plus |
cu-PC | 449 | CG31299-PC | 114..415 | 272..599 | 213 | 27.6 | Plus |
cu-PG | 481 | CG31299-PG | 146..447 | 272..599 | 213 | 27.6 | Plus |
cu-PD | 642 | CG31299-PD | 307..608 | 272..599 | 213 | 27.6 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16037-PB | 544 | GA16037-PB | 187..528 | 278..600 | 299 | 27.6 | Plus |
Dpse\GA16037-PC | 551 | GA16037-PC | 194..535 | 278..600 | 299 | 27.6 | Plus |
Dpse\GA16037-PD | 565 | GA16037-PD | 208..549 | 278..600 | 299 | 27.6 | Plus |
Dpse\GA16037-PE | 357 | GA16037-PE | 1..341 | 279..600 | 294 | 27.6 | Plus |
Dpse\GA16160-PC | 448 | GA16160-PC | 116..417 | 273..600 | 230 | 27.2 | Plus |