Clone FI09101 Report

Search the DGRC for FI09101

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:91
Well:1
Vector:pBS SK-
Associated Gene/TranscriptRab4-RA
Protein status:FI09101.pep: gold
Sequenced Size:987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rab4 2008-12-18 5.12 accounting

Clone Sequence Records

FI09101.complete Sequence

987 bp assembled on 2008-08-28

GenBank Submission: BT044417.1

> FI09101.complete
TTTTCGCGTTTGTAGCGAACCTTCTCACTGAAGTGAGTCCAGTCAAAGAT
TTTAAGCAATCCGATAGTCCTGAAGTCTGGCCGAAAAACCAAAACAAACA
AAGAAGACAACTACGCAGAAGACGAACAAAAACAATGTCGGAAACATACG
ATTACCTGTTCAAGTTCCTGATAATTGGCAGTGCTGGCAGCGGTAAGAGT
TGTCTGTTGCATCACTTCATCGAGAGCAAGTTCAAAGACGACAGTTCGCA
CACCATCGGAGTGGAGTTCGGCTCGCGGATTGTGAACGTGGGCGGCAAGT
CGGTAAAGCTACAGATATGGGACACAGCCGGTCAGGAGAGATTCCGATCG
GTGACAAGATCGTACTATCGCGGAGCAGCCGGAGCTCTCCTGGTCTACGA
TGCCACTTCGCGGGACTCTTTCAATGCTTTGACAAACTGGCTGAATGATG
CTCGCACTCTGGCCAGCCCAAATATTGTGATCCTTTTGGTGGGCAATAAA
AAGGACTTGGAGGAGGCGCGTGATGTGACCTTTCTGGAAGCAAGCACCTT
TGCCCAAGAGAACGAGCTTATCTTCCTGGAGACGAGCGCCAAGACGGGGG
AGAATGTTGAAGAGGCCTTTCTCAAGTGCTCAAAGACCATACTGGCCAAA
ATTGAGACCGGAGAGCTGGATCCCGAGCGCATCGGCAGCGGTATTCAGTA
CGGCGGAGCTGCTCTCCGTAACTTACAGACACGACAGCGCAGCATCAATA
AGCCGGATTGCACCTGTCGCGTTTAAGTCGCATAAGTTGTGCTGATTTAT
TTCCATTTAATCTCAAACCGGAATGCGCATTCGGATTACCCCTTAGTTGT
ATTGTGTACTTGTGTGTGTCCACTTTTTTAGTATGTATTTTGTCTTGCTA
GATTAATCATTCCAATTGTAAGCATAATGCTAATCGATTTGTTTTTTAAC
ATAACCAATTACCACTTTGAAAAAAAAAAAAAAAAAA

FI09101.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rab4.a 1253 Rab4.a 46..1018 1..973 4865 100 Plus
Rab4-RC 1607 Rab4-RC 449..1367 55..973 4595 100 Plus
Rab4-RA 1307 Rab4-RA 149..1067 55..973 4595 100 Plus
Rab4-RC 1607 Rab4-RC 296..351 1..56 280 100 Plus
Rab4-RA 1307 Rab4-RA 1..51 6..56 255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13461389..13461794 564..969 2030 100 Plus
chr2R 21145070 chr2R 13460994..13461326 232..564 1665 100 Plus
chr2R 21145070 chr2R 13460678..13460773 55..150 480 100 Plus
chr2R 21145070 chr2R 13460842..13460923 150..231 410 100 Plus
chr2R 21145070 chr2R 13460525..13460580 1..56 280 100 Plus
chr2L 23010047 chr2L 14356337..14356489 249..401 240 77.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:21:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17574330..17574739 564..973 2050 100 Plus
2R 25286936 2R 17573935..17574267 232..564 1665 100 Plus
2R 25286936 2R 17573619..17573714 55..150 480 100 Plus
2R 25286936 2R 17573783..17573864 150..231 410 100 Plus
2R 25286936 2R 17573466..17573521 1..56 280 100 Plus
2L 23513712 2L 14357537..14357689 249..401 240 77.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17575529..17575938 564..973 2050 100 Plus
2R 25260384 2R 17575134..17575466 232..564 1665 100 Plus
2R 25260384 2R 17574818..17574913 55..150 480 100 Plus
2R 25260384 2R 17574982..17575063 150..231 410 100 Plus
2R 25260384 2R 17574665..17574720 1..56 280 100 Plus
2L 23513712 2L 14357594..14357689 306..401 210 81.2 Plus
Blast to na_te.dros performed on 2019-03-15 18:40:37 has no hits.

FI09101.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:41:54 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13460525..13460580 1..56 100 -> Plus
chr2R 13460680..13460773 57..150 100 -> Plus
chr2R 13460843..13460923 151..231 100 -> Plus
chr2R 13460994..13461326 232..564 100 -> Plus
chr2R 13461390..13461794 565..969 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:59:31 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RC 1..642 135..776 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:12:18 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RC 1..642 135..776 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:27:02 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 1..642 135..776 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:20:08 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RC 1..642 135..776 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:42 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 1..642 135..776 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:09:51 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 8..976 1..969 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:12:18 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 8..976 1..969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:27:02 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 5..973 1..969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-28 18:07:34 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 8..976 1..969 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:42 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
Rab4-RB 5..973 1..969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:41:54 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17573935..17574267 232..564 100 -> Plus
2R 17574331..17574735 565..969 100   Plus
2R 17573466..17573521 1..56 100 -> Plus
2R 17573621..17573714 57..150 100 -> Plus
2R 17573784..17573864 151..231 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:41:54 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17573935..17574267 232..564 100 -> Plus
2R 17574331..17574735 565..969 100   Plus
2R 17573466..17573521 1..56 100 -> Plus
2R 17573621..17573714 57..150 100 -> Plus
2R 17573784..17573864 151..231 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:41:54 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17573935..17574267 232..564 100 -> Plus
2R 17574331..17574735 565..969 100   Plus
2R 17573466..17573521 1..56 100 -> Plus
2R 17573621..17573714 57..150 100 -> Plus
2R 17573784..17573864 151..231 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:27:02 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13460971..13461026 1..56 100 -> Plus
arm_2R 13461126..13461219 57..150 100 -> Plus
arm_2R 13461289..13461369 151..231 100 -> Plus
arm_2R 13461440..13461772 232..564 100 -> Plus
arm_2R 13461836..13462240 565..969 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:42:44 Download gff for FI09101.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17575134..17575466 232..564 100 -> Plus
2R 17575530..17575934 565..969 100   Plus
2R 17574820..17574913 57..150 100 -> Plus
2R 17574665..17574720 1..56 100 -> Plus
2R 17574983..17575063 151..231 100 -> Plus

FI09101.pep Sequence

Translation from 2 to 775

> FI09101.pep
FAFVANLLTEVSPVKDFKQSDSPEVWPKNQNKQRRQLRRRRTKTMSETYD
YLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKS
VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDA
RTLASPNIVILLVGNKKDLEEARDVTFLEASTFAQENELIFLETSAKTGE
NVEEAFLKCSKTILAKIETGELDPERIGSGIQYGGAALRNLQTRQRSINK
PDCTCRV*

FI09101.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11646-PA 213 GF11646-PA 1..213 45..257 1130 100 Plus
Dana\GF14883-PA 239 GF14883-PA 32..239 49..255 620 55.8 Plus
Dana\GF11067-PA 213 GF11067-PA 2..188 48..234 563 56.1 Plus
Dana\GF17263-PA 205 GF17263-PA 8..176 49..217 430 48.5 Plus
Dana\GF10843-PA 207 GF10843-PA 1..174 45..218 422 47.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21802-PA 213 GG21802-PA 1..213 45..257 1130 100 Plus
Dere\GG23219-PA 213 GG23219-PA 2..188 48..234 563 56.1 Plus
Dere\GG24366-PA 214 GG24366-PA 6..165 47..206 433 53.1 Plus
Dere\GG14761-PA 205 GG14761-PA 8..176 49..217 430 48.5 Plus
Dere\GG14295-PA 219 GG14295-PA 16..177 47..206 429 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20926-PA 213 GH20926-PA 1..213 45..257 1126 99.5 Plus
Dgri\GH11344-PA 243 GH11344-PA 36..243 49..255 625 55.9 Plus
Dgri\GH21751-PA 213 GH21751-PA 2..191 48..237 562 55.8 Plus
Dgri\GH18937-PA 205 GH18937-PA 3..176 44..217 434 47.7 Plus
Dgri\GH18257-PA 214 GH18257-PA 6..165 47..206 433 53.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rab4-PA 213 CG4921-PA 1..213 45..257 1087 100 Plus
Rab4-PB 213 CG4921-PB 1..213 45..257 1087 100 Plus
Rab14-PD 215 CG4212-PD 8..215 49..255 598 55.8 Plus
Rab14-PA 215 CG4212-PA 8..215 49..255 598 55.8 Plus
Rab14-PB 239 CG4212-PB 32..239 49..255 598 55.8 Plus
Rab2-PB 213 CG3269-PB 2..188 48..234 550 56.1 Plus
Rab2-PA 213 CG3269-PA 2..188 48..234 550 56.1 Plus
Rab11-PA 214 CG5771-PA 6..165 47..206 427 53.1 Plus
Rab11-PB 214 CG5771-PB 6..165 47..206 427 53.1 Plus
Rab1-PA 205 CG3320-PA 3..176 44..217 422 47.1 Plus
Rab8-PC 207 CG8287-PC 1..174 45..218 418 47.7 Plus
Rab8-PA 207 CG8287-PA 1..174 45..218 418 47.7 Plus
Rab19-PB 219 CG7062-PP3-RB 16..177 47..206 416 50 Plus
Rab19-PA 219 CG7062-PA 16..177 47..206 416 50 Plus
Rab10-PA 204 CG17060-PA 4..173 47..216 389 44.1 Plus
Rab39-PB 218 CG12156-PB 6..196 49..234 389 44.5 Plus
Rab39-PA 218 CG12156-PA 6..196 49..234 389 44.5 Plus
Rab30-PD 223 CG9100-PD 2..170 47..216 387 42.9 Plus
Rab30-PC 223 CG9100-PC 2..170 47..216 387 42.9 Plus
Rab30-PB 223 CG9100-PB 2..170 47..216 387 42.9 Plus
Rab30-PA 223 CG9100-PA 2..170 47..216 387 42.9 Plus
Rab9Fb-PA 214 CG32670-PA 4..213 49..255 382 41 Plus
Rab3-PB 220 CG7576-PB 16..220 47..255 380 37.6 Plus
Rab3-PA 220 CG7576-PA 16..220 47..255 380 37.6 Plus
Rab5-PI 219 CG3664-PI 17..190 40..213 375 43.1 Plus
Rab5-PH 219 CG3664-PH 17..190 40..213 375 43.1 Plus
Rab5-PG 219 CG3664-PG 17..190 40..213 375 43.1 Plus
Rab5-PE 219 CG3664-PE 17..190 40..213 375 43.1 Plus
Rab5-PC 219 CG3664-PC 17..190 40..213 375 43.1 Plus
Rab5-PD 219 CG3664-PD 17..190 40..213 375 43.1 Plus
Rab5-PF 219 CG3664-PF 17..190 40..213 375 43.1 Plus
Rab5-PB 219 CG3664-PB 17..190 40..213 375 43.1 Plus
Rab5-PA 219 CG3664-PA 17..190 40..213 375 43.1 Plus
RabX4-PA 213 CG31118-PA 9..170 53..213 361 41.4 Plus
Rab18-PA 197 CG3129-PA 3..169 50..221 354 44.5 Plus
Rab35-PB 201 CG9575-PB 1..169 45..214 354 44.1 Plus
Rab35-PD 201 CG9575-PD 1..169 45..214 354 44.1 Plus
Rab35-PA 201 CG9575-PA 1..169 45..214 354 44.1 Plus
Rab27-PC 230 CG14791-PC 8..189 49..225 341 41.2 Plus
Rab26-PE 410 CG34410-PE 195..378 35..216 335 37.5 Plus
Rab26-PD 410 CG34410-PD 195..378 35..216 335 37.5 Plus
Rab26-PC 410 CG34410-PC 195..378 35..216 335 37.5 Plus
Rab6-PB 208 CG6601-PB 13..173 53..213 334 39.8 Plus
Rab6-PA 208 CG6601-PA 13..173 53..213 334 39.8 Plus
RabX2-PA 195 CG2885-PA 4..161 49..206 332 41.1 Plus
Rab26-PG 388 CG34410-PG 192..356 54..216 318 40.6 Plus
Rab26-PB 388 CG34410-PB 192..356 54..216 318 40.6 Plus
Rab21-PC 222 CG17515-PC 14..185 53..223 317 39.5 Plus
Rab21-PD 222 CG17515-PD 14..185 53..223 317 39.5 Plus
Rab27-PB 236 CG14791-PB 19..195 54..225 313 39.5 Plus
Rab8-PB 172 CG8287-PB 3..139 82..218 309 46 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18364-PA 213 GI18364-PA 1..213 45..257 1128 99.5 Plus
Dmoj\GI12880-PA 243 GI12880-PA 36..243 49..255 619 55.8 Plus
Dmoj\GI19298-PA 213 GI19298-PA 2..191 48..237 564 55.8 Plus
Dmoj\GI10837-PA 205 GI10837-PA 3..176 44..217 437 47.7 Plus
Dmoj\GI23656-PA 214 GI23656-PA 6..165 47..206 433 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11470-PA 213 GL11470-PA 1..213 45..257 1130 100 Plus
Dper\GL21269-PA 239 GL21269-PA 32..239 49..255 621 55.8 Plus
Dper\GL11116-PA 213 GL11116-PA 2..188 48..234 563 56.1 Plus
Dper\GL27164-PA 205 GL27164-PA 8..204 49..255 435 44 Plus
Dper\GL21786-PA 214 GL21786-PA 6..165 47..206 433 53.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18527-PA 213 GA18527-PA 1..213 45..257 1130 100 Plus
Dpse\GA18036-PA 239 GA18036-PA 32..239 49..255 621 55.8 Plus
Dpse\GA17076-PA 213 GA17076-PA 2..188 48..234 563 56.1 Plus
Dpse\GA17362-PA 205 GA17362-PA 8..204 49..255 435 44 Plus
Dpse\GA19116-PA 214 GA19116-PA 6..165 47..206 433 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21805-PA 213 GM21805-PA 1..213 45..257 1130 100 Plus
Dsec\GM15560-PA 239 GM15560-PA 32..239 49..255 620 55.8 Plus
Dsec\GM20894-PA 200 GM20894-PA 2..177 48..223 554 58 Plus
Dsec\GM15065-PA 214 GM15065-PA 6..165 47..206 433 53.1 Plus
Dsec\GM15089-PA 205 GM15089-PA 8..176 49..217 430 48.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11294-PA 213 GD11294-PA 1..213 45..257 1130 100 Plus
Dsim\GD23961-PA 239 GD23961-PA 32..239 49..255 612 55.3 Plus
Dsim\GD10420-PA 213 GD10420-PA 2..188 48..234 563 56.1 Plus
Dsim\GD19397-PA 198 GD19397-PA 6..165 47..206 431 53.1 Plus
Dsim\GD19996-PA 205 GD19996-PA 8..176 49..217 430 48.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21435-PA 213 GJ21435-PA 1..213 45..257 1114 98.1 Plus
Dvir\GJ18183-PA 236 GJ18183-PA 29..236 49..255 620 55.8 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 2..191 48..237 562 55.8 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 3..176 44..217 437 47.7 Plus
Dvir\GJ23499-PA 214 GJ23499-PA 6..165 47..206 433 53.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10719-PA 213 GK10719-PA 1..213 45..257 1120 99.1 Plus
Dwil\GK18273-PA 243 GK18273-PA 36..243 49..255 634 56.7 Plus
Dwil\GK23088-PA 213 GK23088-PA 2..188 48..234 563 56.1 Plus
Dwil\GK12772-PA 205 GK12772-PA 3..176 44..217 435 47.7 Plus
Dwil\GK17190-PA 219 GK17190-PA 16..186 47..216 435 48.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11879-PA 213 GE11879-PA 1..213 45..257 1130 100 Plus
Dyak\GE19031-PA 239 GE19031-PA 32..239 49..255 620 55.8 Plus
Dyak\GE19072-PA 213 GE19072-PA 2..188 48..234 563 56.1 Plus
Dyak\Rab1-PA 205 GE25003-PA 8..176 49..217 430 48.5 Plus
Dyak\GE20724-PA 219 GE20724-PA 16..177 47..206 429 50 Plus

FI09101.hyp Sequence

Translation from 2 to 775

> FI09101.hyp
FAFVANLLTEVSPVKDFKQSDSPEVWPKNQNKQRRQLRRRRTKTMSETYD
YLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKS
VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDA
RTLASPNIVILLVGNKKDLEEARDVTFLEASTFAQENELIFLETSAKTGE
NVEEAFLKCSKTILAKIETGELDPERIGSGIQYGGAALRNLQTRQRSINK
PDCTCRV*

FI09101.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rab4-PA 213 CG4921-PA 1..213 45..257 1087 100 Plus
Rab4-PB 213 CG4921-PB 1..213 45..257 1087 100 Plus
Rab14-PD 215 CG4212-PD 8..215 49..255 598 55.8 Plus
Rab14-PA 215 CG4212-PA 8..215 49..255 598 55.8 Plus
Rab14-PB 239 CG4212-PB 32..239 49..255 598 55.8 Plus