Clone FI09231 Report

Search the DGRC for FI09231

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:92
Well:31
Vector:pFlc-1
Associated Gene/Transcriptamd-RB
Protein status:FI09231.pep: gold
Sequenced Size:1760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
amd 2008-12-18 5.12 accounting

Clone Sequence Records

FI09231.complete Sequence

1760 bp assembled on 2008-08-28

GenBank Submission: BT044421.1

> FI09231.complete
ATTTGTAGATTCGAATGTCAGCGGTGAACAAGTGCGGAACCAGCGGAGCG
GCTAAATACCCAAATTCCCCCCCAAAGTAAATCGCGCCTTTTTTTTTGGA
TTAACCAGGATCATGGACTTTGATGAGTTCCGTGAATTTGGCCATGCCTC
CATCGAGTTCCTTATCAACTATCTGAGCGGCATACGTGAGAGGGATGTCC
TGCCCAGCACGGCTCCATATGCGGTGATCAATCAGCTGCCCAAGGAGATT
CCCGAGCAGCCCGATCATTGGCGCGAGGTCCTCAAGGATCTGGAGAACAT
CATCCTGCCGGGTCTGACCCACTGGCAATCGCCCTACTTCAATGCCTTCT
ATCCGTCATCCTCGTCGGCGGGCTCCATCATCGGTGAGCTGCTGATCGCG
GGCATCGGAGTCCTTGGATTCAGTTGGATCTGCAGTCCCGCCTGCACAGA
ACTGGAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTGCCCG
CACACTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCAGGGA
TCAGCTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAACAAGC
TGTGGCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAGGTGC
GTGGCCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCATTGAG
AAGGCTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTGGAGA
GGATTTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAGGACG
TGGCAGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCACCACG
GGCACTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCGAGGA
ATTCAAGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCCTTTG
CTCTGGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGGACTCG
CTAAACTTCAACCTGCACAAGTTCATGCTGGTCAACTTCGATTGCTCGGC
CATGTGGCTAAGGGATGCCAACAAGGTGGTCGACAGCTTCAATGTGGATC
GCATCTACCTGAAGCACAAGCACGAGGGTCAGTCGCAAATTCCTGACTTC
CGTCATTGGCAAATCCCCCTGGGTCGCCGCTTCCGAGCTCTAAAAGTCTG
GATCACATTCCGCACTCTGGGAGCCGAGGGATTGCGAAACCATGTGCGCA
AGCACATCGAGTTGGCCAAACAGTTTGAGCAGCTTGTGCTCAAGGATTCG
CGATTCGAGCTGGTGGCTCCTCGTGCCCTGGGACTGGTTTGTTTCCGGCC
CAAAGGTGACAATGAGATTACCACCCAGTTGCTGCAACGGCTTATGGATC
GAAAGAAGATCTACATGGTTAAGGCCGAGCATGCGGGTCGTCAGTTTCTG
CGATTCGTCGTATGCGGCATGGACACCAAAGCCTCCGATATTGATTTCGC
CTGGCAGGAGATCGAGTCTCAACTGACGGACCTGCAGGCGGAGCAATCCT
TGGTGGCCCGCAAATCGGGAAACGTCGGCGATCTTGCGCAGCACTTCCAG
ATCCATCTGAGCACCGAAAATGCAACGCACGAGAAATCTCAGTGAGAAAA
ACGGATAAACTATTTATGTTTAGGGACAACCTAGTTAGTTTGCGATGTAG
TTTTTAACTTTCCACATGTTTATAAATAAAGTGAAATTAAATGTAAAAAA
AAAAAAAAAA

FI09231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
amd-RB 1833 amd-RB 68..1812 1..1745 8725 100 Plus
amd-RA 1857 amd-RA 496..1836 405..1745 6645 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19111380..19112697 427..1744 6575 99.9 Plus
chr2L 23010047 chr2L 19108997..19109233 191..427 1185 100 Plus
chr2L 23010047 chr2L 19108746..19108938 1..193 965 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:21:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19112793..19114111 427..1745 6595 100 Plus
2L 23513712 2L 19110410..19110646 191..427 1185 100 Plus
2L 23513712 2L 19110159..19110351 1..193 965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19112793..19114111 427..1745 6595 100 Plus
2L 23513712 2L 19110410..19110646 191..427 1185 100 Plus
2L 23513712 2L 19110159..19110351 1..193 965 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:57:26 has no hits.

FI09231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:58:15 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19108746..19108937 1..192 100 -> Plus
chr2L 19108999..19109233 193..427 100 -> Plus
chr2L 19111381..19112697 428..1744 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:59:51 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1533 113..1645 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:12:17 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1533 113..1645 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:32:49 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1533 113..1645 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:20:07 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1533 113..1645 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:39:00 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1533 113..1645 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:09:50 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:12:17 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:32:49 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 6..1749 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-28 18:07:31 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:00 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
amd-RB 6..1749 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:58:15 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19110159..19110350 1..192 100 -> Plus
2L 19110412..19110646 193..427 100 -> Plus
2L 19112794..19114110 428..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:58:15 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19110159..19110350 1..192 100 -> Plus
2L 19110412..19110646 193..427 100 -> Plus
2L 19112794..19114110 428..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:58:15 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19110159..19110350 1..192 100 -> Plus
2L 19110412..19110646 193..427 100 -> Plus
2L 19112794..19114110 428..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:32:49 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19110159..19110350 1..192 100 -> Plus
arm_2L 19110412..19110646 193..427 100 -> Plus
arm_2L 19112794..19114110 428..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:42:43 Download gff for FI09231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19110412..19110646 193..427 100 -> Plus
2L 19112794..19114110 428..1744 100   Plus
2L 19110159..19110350 1..192 100 -> Plus

FI09231.pep Sequence

Translation from 112 to 1644

> FI09231.pep
MDFDEFREFGHASIEFLINYLSGIRERDVLPSTAPYAVINQLPKEIPEQP
DHWREVLKDLENIILPGLTHWQSPYFNAFYPSSSSAGSIIGELLIAGIGV
LGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASE
AVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGV
LAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCA
YDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFN
LHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ
IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFEL
VAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVV
CGMDTKASDIDFAWQEIESQLTDLQAEQSLVARKSGNVGDLAQHFQIHLS
TENATHEKSQ*

FI09231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14702-PA 508 GF14702-PA 1..508 1..510 2306 82.9 Plus
Dana\GF15210-PA 510 GF15210-PA 36..510 1..478 1263 49 Plus
Dana\GF12784-PA 876 GF12784-PA 1..466 1..467 1198 46.4 Plus
Dana\GF13800-PA 637 GF13800-PA 1..467 1..467 1149 45.4 Plus
Dana\GF13801-PA 600 GF13801-PA 1..478 1..480 1036 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\amd-PA 510 GG21159-PA 1..510 1..510 2657 97.3 Plus
Dere\GG21650-PA 510 GG21650-PA 36..510 1..478 1210 48.1 Plus
Dere\GG24151-PA 847 GG24151-PA 1..480 1..481 1196 44.8 Plus
Dere\GG10812-PA 637 GG10812-PA 1..467 1..467 1150 45.4 Plus
Dere\GG10813-PA 587 GG10813-PA 1..483 1..481 1039 43.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13435-PA 615 GH13435-PA 109..612 1..503 1969 70.2 Plus
Dgri\GH13483-PA 516 GH13483-PA 36..512 1..479 1245 47.4 Plus
Dgri\GH21773-PA 816 GH21773-PA 1..466 1..467 1177 45.7 Plus
Dgri\GH20147-PA 638 GH20147-PA 1..467 1..467 1140 45.2 Plus
Dgri\GH20148-PA 588 GH20148-PA 1..481 1..479 1032 42.7 Plus
Dgri\GH13435-PA 615 GH13435-PA 1..130 1..127 504 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
amd-PB 510 CG10501-PB 1..510 1..510 2655 100 Plus
amd-PA 510 CG10501-PA 1..510 1..510 2429 90.4 Plus
Ddc-PD 475 CG10697-PD 1..475 1..478 1240 48.1 Plus
Ddc-PB 475 CG10697-PB 1..475 1..478 1240 48.1 Plus
Ddc-PC 510 CG10697-PC 36..510 1..478 1240 48.1 Plus
Hdc-PC 619 CG3454-PC 1..479 1..480 1159 44.7 Plus
Hdc-PD 847 CG3454-PD 1..479 1..480 1159 44.7 Plus
Hdc-PB 847 CG3454-PB 1..479 1..480 1159 44.7 Plus
Hdc-PA 847 CG3454-PA 1..479 1..480 1159 44.7 Plus
Tdc2-PA 637 CG30446-PA 1..467 1..467 1128 45.4 Plus
Tdc1-PA 587 CG30445-PA 1..483 1..481 997 43.1 Plus
Gad1-PD 510 CG14994-PD 32..510 5..474 296 23.9 Plus
Gad1-PC 510 CG14994-PC 32..510 5..474 296 23.9 Plus
Gad1-PA 510 CG14994-PA 32..510 5..474 296 23.9 Plus
Gad1-PB 510 CG14994-PB 32..510 5..474 296 23.9 Plus
b-PC 514 CG7811-PC 79..424 44..401 296 25.9 Plus
b-PB 575 CG7811-PB 140..485 44..401 296 25.9 Plus
b-PA 575 CG7811-PA 140..485 44..401 296 25.9 Plus
CG5618-PA 510 CG5618-PA 152..502 140..468 222 26.9 Plus
CG5618-PE 346 CG5618-PE 13..338 172..468 219 28 Plus
CG5618-PD 346 CG5618-PD 13..338 172..468 219 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13977-PA 507 GI13977-PA 1..504 1..503 2100 75.2 Plus
Dmoj\GI17235-PA 516 GI17235-PA 36..515 1..484 1273 49 Plus
Dmoj\GI19320-PA 817 GI19320-PA 1..467 1..468 1159 45 Plus
Dmoj\GI20238-PA 659 GI20238-PA 1..467 1..467 1142 45.4 Plus
Dmoj\GI20239-PA 583 GI20239-PA 1..481 1..479 1032 43.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21186-PA 436 GL21186-PA 1..436 1..436 1869 77.3 Plus
Dper\amd-PA 430 GL21130-PA 26..430 106..510 1838 83 Plus
Dper\GL21129-PA 515 GL21129-PA 41..504 1..467 1208 47.8 Plus
Dper\GL11582-PA 843 GL11582-PA 1..468 1..467 1159 45.5 Plus
Dper\GL10988-PA 635 GL10988-PA 1..467 1..467 1138 45.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\amd-PA 510 GA10357-PA 1..510 1..510 2412 86.1 Plus
Dpse\Ddc-PA 515 GA10503-PA 41..504 1..467 1208 47.8 Plus
Dpse\GA17460-PA 843 GA17460-PA 1..468 1..467 1159 45.5 Plus
Dpse\GA15851-PA 635 GA15851-PA 1..467 1..467 1131 45.2 Plus
Dpse\GA15850-PA 593 GA15850-PA 1..483 1..485 1022 41.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17326-PA 510 GM17326-PA 1..510 1..510 2702 98.8 Plus
Dsec\GM17029-PA 510 GM17029-PA 36..510 1..478 1225 47.3 Plus
Dsec\GM21194-PA 847 GM21194-PA 1..480 1..481 1193 44.8 Plus
Dsec\GM20861-PA 638 GM20861-PA 1..467 1..467 1152 45.4 Plus
Dsec\GM20862-PA 587 GM20862-PA 1..483 1..481 1039 43.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\amd-PA 510 GD24184-PA 1..510 1..510 2718 99.6 Plus
Dsim\Ddc-PA 510 GD21778-PA 36..510 1..478 1236 47.9 Plus
Dsim\GD10721-PA 847 GD10721-PA 1..480 1..481 1195 44.8 Plus
Dsim\GD10313-PA 587 GD10313-PA 1..483 1..481 1039 43.4 Plus
Dsim\GD10312-PA 416 GD10312-PA 1..400 1..400 1024 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\amd-PA 507 GJ18241-PA 1..504 1..503 2104 76 Plus
Dvir\Ddc-PA 504 GJ17995-PA 24..500 1..479 1248 47.6 Plus
Dvir\GJ22198-PA 825 GJ22198-PA 1..475 1..473 1167 45.3 Plus
Dvir\GJ20190-PA 649 GJ20190-PA 1..467 1..467 1142 45.4 Plus
Dvir\GJ20191-PA 582 GJ20191-PA 1..481 1..479 1030 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\amd-PA 513 GK24791-PA 1..513 1..510 2323 83 Plus
Dwil\Ddc-PA 511 GK24237-PA 37..511 1..478 1244 47.9 Plus
Dwil\GK17782-PA 806 GK17782-PA 1..476 1..478 1182 44.7 Plus
Dwil\GK23145-PA 641 GK23145-PA 1..467 1..467 1128 44.3 Plus
Dwil\GK23146-PA 589 GK23146-PA 1..467 1..469 1038 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13232-PA 510 GE13232-PA 1..510 1..510 2679 98 Plus
Dyak\GE12670-PA 513 GE12670-PA 39..513 1..478 1220 48.5 Plus
Dyak\GE19346-PA 849 GE19346-PA 1..466 1..467 1196 45.9 Plus
Dyak\GE24598-PA 632 GE24598-PA 1..467 1..467 1148 45.4 Plus
Dyak\GE24609-PA 587 GE24609-PA 1..483 1..481 1030 42.7 Plus

FI09231.hyp Sequence

Translation from 112 to 1644

> FI09231.hyp
MDFDEFREFGHASIEFLINYLSGIRERDVLPSTAPYAVINQLPKEIPEQP
DHWREVLKDLENIILPGLTHWQSPYFNAFYPSSSSAGSIIGELLIAGIGV
LGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASE
AVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGV
LAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCA
YDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFN
LHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ
IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFEL
VAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVV
CGMDTKASDIDFAWQEIESQLTDLQAEQSLVARKSGNVGDLAQHFQIHLS
TENATHEKSQ*

FI09231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
amd-PB 510 CG10501-PB 1..510 1..510 2655 100 Plus
amd-PA 510 CG10501-PA 1..510 1..510 2429 90.4 Plus
Ddc-PD 475 CG10697-PD 1..475 1..478 1240 48.1 Plus
Ddc-PB 475 CG10697-PB 1..475 1..478 1240 48.1 Plus
Ddc-PC 510 CG10697-PC 36..510 1..478 1240 48.1 Plus