Clone FI09246 Report

Search the DGRC for FI09246

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:92
Well:46
Vector:pFlc-1
Associated Gene/TranscriptGadd45-RA
Protein status:FI09246.pep: gold
Sequenced Size:1509

Clone Sequence Records

FI09246.complete Sequence

1509 bp assembled on 2009-06-25

GenBank Submission: BT088861.1

> FI09246.complete
GATTCATTGTGAAATTGCCACTCAAAATTGAAACAGCGCGGACAAACGGT
TGAAGAAACACAAAGCCCAGTGCGAAAAGAATTTCATAAGCAAAAGTTAA
TCGGGTGCTAAACAAAAACACTCGAAAGCAAAGCAAAGCATAGCAAAAGC
AACAACAAACAGTGCCAGCTGAAAGTGCCCAAAAAGTGGAAGCCAACGGC
TCGAAAATAACACAAAACCCAAAGCAAACGCACAACCAAACGGATAACAC
CCACAATATGGTCGTCGAGGAGAACTGCAGCATGCACCACCTGGAGCGCG
AACTGGACCTGGAGCTAGAGATCGATATGGCCATGGAGTGTGCCCCCATC
GGACGCACCATCAAGTCGGCCCTTCTAAGGGCCCAGAGCGAGGCGCGTGT
GATCGTGGGCCTGTCCGCCGCCATCAACGTGCTCTCCAAGTCGCCGGAGG
GATCCCTCTTCTGCCTGATGGCCCAGCCCAAGGACGGCGACTCTGCCACC
CACATGCACGAGGTACTGCTGGAGGCCTTTTGCTACGAGAACGACATCTA
CGTGATCAAGGTGGACGACGCCACCAAGCTGAGCCGCATCCTCGGCCAGG
ACTCCGTCGAGTCGTGCTGCCTGGTCCAGAAGGTCTGGGCCGACGCCCCC
GAGGAGCAGCTGACCAAGGCCGAGAACCAGCTAGTCGACTACTGCGAGGC
CCACTGGGACGCCCCCCAGCAGCCCATTGTCCAGCTGCCGGCTGTGTAGG
CGCGTGTGAGCGGGACAGCCAGATGTCACAGAATTGAATGGCCCCGCACA
GTGGGCGCAAGCAAACTCTAATGGAAACCAGTTGCTGGGGGTTGATGGCC
CCGAACGTCTTGGAGAGTTCCCGAGGGAATCCGACGTTTCGTGGCGCTGC
CAGAAGCCCACCGGCACATGTACACCTACATAGGATATATAGAATACGAC
ATATGTATATACCCTAACCTGCTGTATTCAGGAAGCAGGAGAGGGAGGAG
GGGAGCAGAGATGGATAAGCCGGCGCCTTGGCGGATAATTGAAACTGAAA
GGCGACCTTCGAGGCGGCAGTAACTGCAGCTGAGATACCCGCGGAAGTCG
CGCACAGATACTCACGCACACAGCCAAGGAGCAGCATCACACACAAGCGC
GTGACCAGCTGCCGAACCAACAAAACATATGTGCACATATGTACACAGAA
CCATACATAAATATAGCCAATTTGTTTCTGTATAATTTTCGCTTTAAGCG
TCGCGCAAATTTACTGATAATGACAATTATTCTGTACGCCGTAAATTGTA
AATTATACTTAAAAGGAGAGCAGCCAATTGCATGTATACCATTAAAGTTT
TGTTATGTTAGCTTTTCCAAAAAAAAAAACATCAGATGAAAGCACACAAA
AAAATGTTATCTAACTTAAGCACAAAAAGAAAATTGAAAAAGGTTTGAAA
AAAACTGATAAAAAATGAAAAATAAAAATCTTGTATAAAAACCAAAAAAA
AAAAAAAAA

FI09246.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd45-RA 1493 Gadd45-RA 3..1493 2..1493 7420 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3136554..3138044 2..1493 7365 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:21:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7249165..7250658 2..1496 7425 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7250364..7251857 2..1496 7435 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 17:34:23 has no hits.

FI09246.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:35:21 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3136552..3138044 1..1493 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:57 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..492 258..749 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:48:47 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..492 258..749 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:45 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..492 258..749 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:07 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..492 258..749 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-25 12:21:31 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..1493 1..1493 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:48:47 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 1..1493 1..1493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:45 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 3..1495 1..1493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:07 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd45-RA 3..1495 1..1493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:21 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7249163..7250655 1..1493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:21 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7249163..7250655 1..1493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:21 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7249163..7250655 1..1493 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:45 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3136668..3138160 1..1493 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:26 Download gff for FI09246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7250362..7251854 1..1493 99   Plus

FI09246.hyp Sequence

Translation from 257 to 748

> FI09246.hyp
MVVEENCSMHHLERELDLELEIDMAMECAPIGRTIKSALLRAQSEARVIV
GLSAAINVLSKSPEGSLFCLMAQPKDGDSATHMHEVLLEAFCYENDIYVI
KVDDATKLSRILGQDSVESCCLVQKVWADAPEEQLTKAENQLVDYCEAHW
DAPQQPIVQLPAV*

FI09246.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd45-PA 163 CG11086-PA 1..163 1..163 843 100 Plus

FI09246.pep Sequence

Translation from 257 to 748

> FI09246.pep
MVVEENCSMHHLERELDLELEIDMAMECAPIGRTIKSALLRAQSEARVIV
GLSAAINVLSKSPEGSLFCLMAQPKDGDSATHMHEVLLEAFCYENDIYVI
KVDDATKLSRILGQDSVESCCLVQKVWADAPEEQLTKAENQLVDYCEAHW
DAPQQPIVQLPAV*

FI09246.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12703-PA 169 GF12703-PA 1..169 1..163 737 84 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23269-PA 163 GG23269-PA 1..163 1..163 825 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21525-PA 168 GH21525-PA 1..168 1..163 670 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd45-PA 163 CG11086-PA 1..163 1..163 843 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19497-PA 162 GI19497-PA 1..162 1..163 684 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11158-PA 160 GL11158-PA 1..160 1..163 721 84.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10750-PA 160 GA10750-PA 1..160 1..163 729 85.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20942-PA 163 GM20942-PA 1..163 1..163 845 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15338-PA 93 GD15338-PA 1..93 71..163 495 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21062-PA 160 GJ21062-PA 1..160 1..163 673 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21796-PA 154 GK21796-PA 1..154 1..163 664 79.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19117-PA 163 GE19117-PA 1..163 1..163 847 98.2 Plus