Clone FI09617 Report

Search the DGRC for FI09617

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:96
Well:17
Vector:pOT2
Associated Gene/Transcriptdor-RA
Protein status:FI09617.pep: gold
Sequenced Size:3172

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
dor 2008-08-15 Release 5.9 accounting
dor 2008-12-18 5.12 accounting

Clone Sequence Records

FI09617.complete Sequence

3172 bp assembled on 2008-07-15

GenBank Submission: BT044436.1

> FI09617.complete
ATCACTTCTCAGATTGGGGCGTTTTGGTAGAACTAATTGTAAACAGCGGA
GGAAAAGGCAGCAGAATGGACACGTCTATGCCTAACCAGCCCAAGTTCCT
GCCCCGCATTGAGCATAATTCCTCGGGCGCTACCGCCAACTCCTACGTGG
CCACCGCCTCCGGCAATCCCTTCGAAACGGACGATGAGGATGAAATCTTC
AGCAGACACAAGATGGTGCTCCGGGTGCCCAGCAACTGCACCGGCGACCT
GATGCACCTGGCCGTCTCGCGGAATTGGCTCGTCTGCCTGTTGGGCACGC
CGGAGCGGACAACTCTGCTGCGCTTCTTCCTGCCTCGCGCGATTCCACCG
GGAGAAGCGGTGCTGGAAAAGTACCTCTCTGGCTCCGGCTATAAAATAAC
ACGCATGTTCCTGGACCCCACGGGCCATCACATCATTATCGCACTGGTGC
CAAAGTCCGCTACCGCTGGTGTCTCTCCGGACTTCCTGTACATCCACTGC
CTCGAGTCGCCCCAGGCGCAACAGCTGAAGGTGCGGCGCATCGAGAAGTT
CAAGGACCACGAGATAACGGCCGTCGCTTTCAATCCGTACCACGGCAACG
AGTCCTCCACGGGGCCCATCCTGCTCGGCACAAGTCGGGGCCTCATATTC
GAGACCGAGCTGAATCCCGCAGCCGACGGTCATGTCCAGCGCAAGCAGCT
TTATGACCTGGGTCTGGGCCGTCCCAAGTACCCCATCACGGGCCTCAAGC
TGCTGCGGGTGCCCAACAGCAGTCGGTACATAATCGTGGTCACCAGTCCC
GAGTGCATCTACACATTCCAGGAGACGCTTAAGGCAGAGGAGCGCTCGCT
GCAGGCAATATTCGCGGGCTACGTGAGCGGAGTGCAGGAGCCGCACTGCG
AGGAGCGCAAGACTGATCTGACTTTCTCGCAGCTCCGCTTTTTCGCTCCG
CCGAACAGCAAGTATCCGAAGCAGTGGGCGTGGCTGTGTGGCGAGGGCAT
CCGTGTGGGCGAGCTATCCATCGAGGCAAACAGTGCCGCCACCCTGATAG
GAAACACTCTAATAAACCTGGACTTCGAGAAGACAATGCATCTGTCGTAC
GGCGAGCGGCGTCTCAACACTCCCAAAGCGTTCGTGCTGACCGAGTACCA
CGCCGTGCTGCTGTACGCGGATCATGTGCGGGCCATCTGCCTGCTGAACC
AAGAGCAGGTCTACCAGGAAGCATTCGACGAGGCCCGAGTGGGCAAACCG
CTTAGCATCGAACGGGACGAGCTTACCGGCTCAATATACGTTTATACCGT
GAAAACCGTGTTTAACCTCAGGGTGACGCGAGAGGAGCGAAACGTGTGGC
GCATTTACCTCGACAAGGGTCAGTACGAGCTAGCAACGGCACACGCAGCC
GAGGATCCTGAACACCTTCAGCTTGTGCTCTGCCAGCGGGCGGATGCCGC
ATTCGCGGACGGATCCTATCAGGTGGCAGCCGATTATTACGCTGAGACGG
ACAAGTCCTTTGAAGAGGTGTGCTTGAAGTTCATGGTGCTGCCGGACAAG
CGACCGATTATCAACTACGTTAAGAAACGCCTTAGCCGAGTGACCACTAA
GCCAATGGAAACCGATGAGCTGGACGAGGACAAAATGAACATCATCAAGG
CGTTGGTCATCTGGCTAATTGACCTCTACCTCATCCAGATCAACATGCCC
GACAAGGACGAGGAGTGGCGCAGCTCGTGGCAGACGGAGTACGACGAGTT
CATGATGGAGGCCCATGTTCTGTCATGCACGCGTCAAAATCGCGAAACTG
TACGGCAGCTGATAGCCGAGCACGCTGACCCGCGCAACATGGCTCAATTC
GCCATCGCCATTGGCGACTATGATGAAGTGGTGGCGCAACAGCTTAAGGC
CGAGTGTTATGCCGAGGCACTGCAAACGCTGATTAACCAAAGGAATCCAG
AACTGTTCTACAAGTACGCGCCTGAACTGATAACTAGGCTGCCAAAGCCC
ACGGTTGACGCCCTAATGGCCCAGGGATCTCGACTGGAGGTGGAGAAGCT
GGTCCCCACGCTCATAATCATGGAAAATCGCGAGCAGCGGGAACAGACCC
AACGATACCTTGAGTTCGCCATTTACAAACTAAACACGACCAATGACGCC
ATCCACAATTTTCTGCTGCATTTGTACGCGGAGCACGAGCCCAAGCTGCT
GATGAAGTACCTCGAGATCCAGGGCCGCGACGAGAGCCTCGTCCACTACG
ATATCTATTACGCCCACAAAGTGTGCACCGACTTGGACGTGAAGGAAGCT
CGCGTGTTCCTCGAATGCATGCTGCGCAAGTGGATCTCTGCAGTGGATCT
GGCCCTCACGTTCGACATGAAGCTGGCCAAGGAAACCGCCTCCAGGCCGT
CGGACAGCAAGATCCGGCGGAAGCTCTGGCTTCGCATAGCTTATCACGAC
ATAAAGGGAACCAACGACGTCAAAAAGGCATTGAATCTTTTGAAGGAGTG
CGATCTCTTACGCATCGAGGACCTACTGCCCTTCTTTGCAGACTTTGAAA
AAATCGACAACTTCAAGGAGGCAATCTGTGATGCTCTGAGGGATTACAAT
CAGCGCATCCAGGAGCTGCAGCGTGAAATGGCCGAGACTACGGAGCAAAC
CGATCGCGTCACCGCCGAGTTGCAGCAATTGCGCCAGCACAGCCTCACCG
TTGAGTCTCAGGATACTTGCGAAATTTGCGAGATGATGCTGCTGGTTAAG
CCCTTTTTCATCTTCATCTGCGGCCACAAGTTCCACAGCGATTGCCTGGA
GAAGCACGTTGTGCCCTTGCTCACCAAGGAGCAATGTCGGCGCCTCGGCA
CTCTAAAGCAGCAACTGGAGGCGGAGGTGCAAACGCAGGCGCAACCGCAG
TCAGGTGCCCTGAGCAAACAGCAGGCGATGGAGCTGCAGCGGAAGAGGGC
GGCACTGAAAACCGAGATCGAGGATATTCTTGCTGCGGATTGCCTATTCT
GCGGGCTGCTAATCAGCACCATCGACCAGCCGTTCGTTGACGACTGGGAG
CAGGTGAATGTCGAGTGGGAGTAGTTCGCTACCACCGTCGTTCAGACCCA
AATATTTATGTACATATAAAGTATTTATTATTATAAATAAACCTACACTG
ATCACAAAAAAAAAAAAAAAAA

FI09617.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
dor-RA 3259 dor-RA 96..3253 1..3158 15670 99.7 Plus
CG3740-RA 1329 CG3740-RA 854..1329 3158..2683 2380 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1560028..1561455 1012..2439 7125 99.9 Plus
chrX 22417052 chrX 1559315..1559975 353..1013 3260 99.5 Plus
chrX 22417052 chrX 1561730..1562294 2591..3155 2825 100 Plus
chrX 22417052 chrX 1558901..1559254 1..354 1755 99.7 Plus
chrX 22417052 chrX 1561515..1561669 2438..2592 775 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:22:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1666185..1667612 1012..2439 7080 99.7 Plus
X 23542271 X 1665472..1666132 353..1013 3260 99.5 Plus
X 23542271 X 1667887..1668454 2591..3158 2840 100 Plus
X 23542271 X 1665058..1665411 1..354 1755 99.7 Plus
X 23542271 X 1667672..1667826 2438..2592 775 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1674283..1675710 1012..2439 7080 99.7 Plus
X 23527363 X 1673570..1674230 353..1013 3260 99.5 Plus
X 23527363 X 1675985..1676552 2591..3158 2840 100 Plus
X 23527363 X 1673156..1673509 1..354 1755 99.7 Plus
X 23527363 X 1675770..1675924 2438..2592 775 100 Plus
Blast to na_te.dros performed 2019-03-15 18:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 3539..3587 926..975 121 74 Plus

FI09617.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:40:26 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1558901..1559254 1..354 99 -> Plus
chrX 1559317..1559975 355..1013 99 -> Plus
chrX 1560030..1561455 1014..2439 99 -> Plus
chrX 1561517..1561668 2440..2591 100 -> Plus
chrX 1561731..1562294 2592..3155 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:00:32 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 1..3009 66..3074 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:05:29 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 1..3009 66..3074 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:26:36 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 1..3009 66..3074 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:52:53 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 1..3009 66..3074 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:18 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 1..3009 66..3074 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:28:30 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 4..3158 1..3155 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:05:29 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 4..3158 1..3155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:26:36 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 7..3161 1..3155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:52:53 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 4..3158 1..3155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:18 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
dor-RA 7..3161 1..3155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:40:26 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
X 1665058..1665411 1..354 99 -> Plus
X 1665474..1666132 355..1013 99 -> Plus
X 1666187..1667612 1014..2439 99 -> Plus
X 1667674..1667825 2440..2591 100 -> Plus
X 1667888..1668451 2592..3155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:40:26 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
X 1665058..1665411 1..354 99 -> Plus
X 1665474..1666132 355..1013 99 -> Plus
X 1666187..1667612 1014..2439 99 -> Plus
X 1667674..1667825 2440..2591 100 -> Plus
X 1667888..1668451 2592..3155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:40:26 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
X 1665058..1665411 1..354 99 -> Plus
X 1665474..1666132 355..1013 99 -> Plus
X 1666187..1667612 1014..2439 99 -> Plus
X 1667674..1667825 2440..2591 100 -> Plus
X 1667888..1668451 2592..3155 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:26:36 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1559091..1559444 1..354 99 -> Plus
arm_X 1559507..1560165 355..1013 99 -> Plus
arm_X 1560220..1561645 1014..2439 99 -> Plus
arm_X 1561707..1561858 2440..2591 100 -> Plus
arm_X 1561921..1562484 2592..3155 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:34:09 Download gff for FI09617.complete
Subject Subject Range Query Range Percent Splice Strand
X 1673156..1673509 1..354 99 -> Plus
X 1673572..1674230 355..1013 99 -> Plus
X 1674285..1675710 1014..2439 99 -> Plus
X 1675772..1675923 2440..2591 100 -> Plus
X 1675986..1676549 2592..3155 100   Plus

FI09617.pep Sequence

Translation from 2 to 3073

> FI09617.pep
HFSDWGVLVELIVNSGGKGSRMDTSMPNQPKFLPRIEHNSSGATANSYVA
TASGNPFETDDEDEIFSRHKMVLRVPSNCTGDLMHLAVSRNWLVCLLGTP
ERTTLLRFFLPRAIPPGEAVLEKYLSGSGYKITRMFLDPTGHHIIIALVP
KSATAGVSPDFLYIHCLESPQAQQLKVRRIEKFKDHEITAVAFNPYHGNE
SSTGPILLGTSRGLIFETELNPAADGHVQRKQLYDLGLGRPKYPITGLKL
LRVPNSSRYIIVVTSPECIYTFQETLKAEERSLQAIFAGYVSGVQEPHCE
ERKTDLTFSQLRFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSAATLIG
NTLINLDFEKTMHLSYGERRLNTPKAFVLTEYHAVLLYADHVRAICLLNQ
EQVYQEAFDEARVGKPLSIERDELTGSIYVYTVKTVFNLRVTREERNVWR
IYLDKGQYELATAHAAEDPEHLQLVLCQRADAAFADGSYQVAADYYAETD
KSFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELDEDKMNIIKA
LVIWLIDLYLIQINMPDKDEEWRSSWQTEYDEFMMEAHVLSCTRQNRETV
RQLIAEHADPRNMAQFAIAIGDYDEVVAQQLKAECYAEALQTLINQRNPE
LFYKYAPELITRLPKPTVDALMAQGSRLEVEKLVPTLIIMENREQREQTQ
RYLEFAIYKLNTTNDAIHNFLLHLYAEHEPKLLMKYLEIQGRDESLVHYD
IYYAHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETASRPS
DSKIRRKLWLRIAYHDIKGTNDVKKALNLLKECDLLRIEDLLPFFADFEK
IDNFKEAICDALRDYNQRIQELQREMAETTEQTDRVTAELQQLRQHSLTV
ESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGT
LKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCLFC
GLLISTIDQPFVDDWEQVNVEWE*

FI09617.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22166-PA 1008 GF22166-PA 1..1008 22..1023 3949 70.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\dor-PA 1002 GG12872-PA 1..1002 22..1023 5210 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17958-PA 987 GH17958-PA 1..987 22..1023 3660 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
dor-PA 1002 CG3093-PA 1..1002 22..1023 5221 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16496-PA 982 GI16496-PA 1..982 22..1023 3824 70.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14267-PA 1003 GL14267-PA 1..1003 22..1023 4375 79.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15921-PA 1003 GA15921-PA 1..1003 22..1023 4376 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19158-PA 1002 GM19158-PA 1..1002 22..1023 5303 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\dor-PA 986 GD24721-PA 1..986 22..1023 5238 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16039-PA 983 GJ16039-PA 1..983 22..1023 3595 68.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25025-PA 1009 GK25025-PA 1..1009 22..1023 3941 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16701-PA 1000 GE16701-PA 1..1000 22..1023 5208 96.4 Plus

FI09617.hyp Sequence

Translation from 2 to 3073

> FI09617.hyp
HFSDWGVLVELIVNSGGKGSRMDTSMPNQPKFLPRIEHNSSGATANSYVA
TASGNPFETDDEDEIFSRHKMVLRVPSNCTGDLMHLAVSRNWLVCLLGTP
ERTTLLRFFLPRAIPPGEAVLEKYLSGSGYKITRMFLDPTGHHIIIALVP
KSATAGVSPDFLYIHCLESPQAQQLKVRRIEKFKDHEITAVAFNPYHGNE
SSTGPILLGTSRGLIFETELNPAADGHVQRKQLYDLGLGRPKYPITGLKL
LRVPNSSRYIIVVTSPECIYTFQETLKAEERSLQAIFAGYVSGVQEPHCE
ERKTDLTFSQLRFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSAATLIG
NTLINLDFEKTMHLSYGERRLNTPKAFVLTEYHAVLLYADHVRAICLLNQ
EQVYQEAFDEARVGKPLSIERDELTGSIYVYTVKTVFNLRVTREERNVWR
IYLDKGQYELATAHAAEDPEHLQLVLCQRADAAFADGSYQVAADYYAETD
KSFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELDEDKMNIIKA
LVIWLIDLYLIQINMPDKDEEWRSSWQTEYDEFMMEAHVLSCTRQNRETV
RQLIAEHADPRNMAQFAIAIGDYDEVVAQQLKAECYAEALQTLINQRNPE
LFYKYAPELITRLPKPTVDALMAQGSRLEVEKLVPTLIIMENREQREQTQ
RYLEFAIYKLNTTNDAIHNFLLHLYAEHEPKLLMKYLEIQGRDESLVHYD
IYYAHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETASRPS
DSKIRRKLWLRIAYHDIKGTNDVKKALNLLKECDLLRIEDLLPFFADFEK
IDNFKEAICDALRDYNQRIQELQREMAETTEQTDRVTAELQQLRQHSLTV
ESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGT
LKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCLFC
GLLISTIDQPFVDDWEQVNVEWE*

FI09617.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
dor-PA 1002 CG3093-PA 1..1002 22..1023 5221 100 Plus