Clone FI10001 Report

Search the DGRC for FI10001

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:100
Well:1
Vector:pOT2
Associated Gene/Transcriptnet-RB
Protein status:FI10001.pep: gold
Sequenced Size:1573

Clone Sequence Records

FI10001.complete Sequence

1573 bp assembled on 2009-01-22

GenBank Submission: BT058006.1

> FI10001.complete
AACAGTCGTGCTCCGGTCATAAGATTTTACGAGAAATCGTGAAAATAAAA
AGTTCTAATAAGTTGAAGATAGTGCCAAAGCTCACATACGGCTTAACCAA
ACCACAAATTAAAAAAGTGCCTTTAAACAATACGTGACATTTCAATAGGT
TTATGTTAACATAAAGCCCGTAATTGTGAATAAATAAAATATAAGCCCAC
AAAACTATTCAAATACCGTTTTCGGATACGCGCTACTTTTAAAGTTCTTG
AATGTCCTTCGCGGCTATGGCGAATACCAACACAGAAAAACTTTACATGC
AACTAAGCGCATCGGAATTATCAGCAATTATTATGAAAGATTCACCCAAT
TCCAACGACCGTGATGCGGGTTTTTGTTCCGCCAGTTCGGAAAGCGAAGG
CGGAGACGACTTGGTCGTCGAGCACGCGCGCAGTGGCAGTCCCGACATCA
GACCAAAAGGAACAGACTCGGCGGACTCCAAGCCAATAGCCCTTGTCCGC
AACAAACGCAAGAGTTCGGAACCCTTCAAAGTCGTAGGTTTGACGACTCC
CAACTCTAAATCCATGCCTGGTCCTCCGTCCAGTGCGAGTATGAATGCAA
CTGGTCCGCTAAAGAAACGCATACGATACACATCTTCCGCCGATTCGGCA
GTTGTCCTAACGCCACCAGCCATAGACTCTCCACCGCCCAACAGTTGCAT
ACCTTCCACGTTGCGCCTGCAGCATGAAATAATGCCTAATCCGGCACATA
TATATGTTCGCCATCCGGGAGTTACGACTCTTCACAGATCGCTTGCTGCC
CACCCAGAACAGCTGGAACCACTCGCATTAGTAACGACCAAAAAGCAATG
TGTCGACCAAGCGGGGCCTAAAATAGAGGCCTTTTCCGCATTGCTAATTG
GAAAACAGCCATCCGCCAAAAAAACGTTGAAGGAAAGGACGCAAAAAGAA
TCAACGTCATCTTCCTTTTTAGAAGCTAGTCTTAGCGATGAGGATCTGAA
CAAGACGGGATTGGCACCAATTTCGCGACCTCATCAACATCAACGCAATT
ACAAGAATATGACTAGGGAGCGCCGCATTGAGGCGAACGCACGTGAACGG
ACCCGTGTACACACCATATCCGCCGCCTACGAAACGCTCCGCCAAGCTGT
TCCAGCCTATGCCAGCACTCAAAAACTTTCCAAACTCTCCGTTCTTCGGG
TAGCGTGTTCCTATATACTAACCTTAAGTAGAATGGCTGGCGAGGATTAC
AGCGCCGATCAATCCGTACCGTCCATTGCCACGTGCTTAGAAGCTGTAAC
ATCAACCATCCAAACGGAGGGAAAAGTGAAACGAAAGAAAGACGAGTAAT
CTGTCCAGTTTCGTGGATAACTTACTTTTTTAGACTTTAAATGCGACTGA
TTTCTGCTATTTTTTTAAATATTTGTGCTTAAGCTTAGATTAATCTGCAT
ACAGCATTCCTATCCACATGCTTTGATTCTTTGCCAGAAGTGGCCTAATA
GCTTTAAAAGTTTTCAAGGCTTTGTTAGATATACAGACTTCATGAGTTTA
AAAAAAAAAAAAAAAAAAAAAAA

FI10001.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
net.a 2307 net.a 38..1596 1..1559 7780 99.9 Plus
net.b 2684 net.b 29..1587 1..1559 7780 99.9 Plus
net-RB 2307 net-RB 38..1596 1..1559 7780 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 83102..84314 1549..338 6015 99.9 Minus
chr2L 23010047 chr2L 87055..87393 339..1 1680 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:22:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 83058..84279 1559..338 6110 100 Minus
2L 23513712 2L 87020..87358 339..1 1680 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 83058..84279 1559..338 6110 100 Minus
2L 23513712 2L 87020..87358 339..1 1680 99.7 Minus
Blast to na_te.dros performed 2019-03-16 21:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 523..746 77..295 116 54 Plus

FI10001.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:48:46 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 83102..84312 340..1549 99 <- Minus
chr2L 87055..87393 1..339 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:44 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 1..1083 267..1349 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:33:13 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 1..1083 267..1349 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:35 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 1..1083 267..1349 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:22 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 1..1083 267..1349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-22 08:39:16 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 25..1573 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:33:13 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 25..1573 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:35 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 30..1578 1..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:22 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
net-RB 30..1578 1..1549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:46 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
2L 83068..84277 340..1549 100 <- Minus
2L 87020..87358 1..339 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:46 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
2L 83068..84277 340..1549 100 <- Minus
2L 87020..87358 1..339 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:46 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
2L 83068..84277 340..1549 100 <- Minus
2L 87020..87358 1..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:35 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 83068..84277 340..1549 100 <- Minus
arm_2L 87020..87358 1..339 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:06:26 Download gff for FI10001.complete
Subject Subject Range Query Range Percent Splice Strand
2L 83068..84277 340..1549 100 <- Minus
2L 87020..87358 1..339 99   Minus

FI10001.pep Sequence

Translation from 251 to 1348

> FI10001.pep
MSFAAMANTNTEKLYMQLSASELSAIIMKDSPNSNDRDAGFCSASSESEG
GDDLVVEHARSGSPDIRPKGTDSADSKPIALVRNKRKSSEPFKVVGLTTP
NSKSMPGPPSSASMNATGPLKKRIRYTSSADSAVVLTPPAIDSPPPNSCI
PSTLRLQHEIMPNPAHIYVRHPGVTTLHRSLAAHPEQLEPLALVTTKKQC
VDQAGPKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEASLSDEDLN
KTGLAPISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAV
PAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSADQSVPSIATCLEAVT
STIQTEGKVKRKKDE*

FI10001.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14859-PA 456 GF14859-PA 105..456 30..365 1099 66.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24687-PA 369 GG24687-PA 1..369 1..365 1785 92.4 Plus
Dere\GG11475-PA 386 GG11475-PA 38..172 223..347 153 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10058-PA 362 GH10058-PA 1..362 6..365 1005 60.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
net-PC 360 CG11450-PC 1..360 6..365 1819 100 Plus
net-PB 360 CG11450-PB 1..360 6..365 1819 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16429-PA 347 GI16429-PA 6..347 12..365 940 57.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13900-PA 364 GL13900-PA 1..364 6..365 1278 70.3 Plus
Dper\GL21846-PA 449 GL21846-PA 71..205 223..347 154 38.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11011-PA 364 GA11011-PA 1..364 6..365 1278 70.3 Plus
Dpse\GA18883-PA 415 GA18883-PA 37..171 223..347 155 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16704-PA 365 GM16704-PA 1..365 1..365 1858 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22993-PA 365 GD22993-PA 1..365 1..365 1863 96.7 Plus
Dsim\GD21279-PA 386 GD21279-PA 38..172 223..347 148 35.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16214-PA 357 GJ16214-PA 1..357 6..365 961 58.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21091-PA 351 GK21091-PA 3..351 11..365 990 59.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16494-PA 369 GE16494-PA 1..369 1..365 1680 89.4 Plus

FI10001.hyp Sequence

Translation from 251 to 1348

> FI10001.hyp
MSFAAMANTNTEKLYMQLSASELSAIIMKDSPNSNDRDAGFCSASSESEG
GDDLVVEHARSGSPDIRPKGTDSADSKPIALVRNKRKSSEPFKVVGLTTP
NSKSMPGPPSSASMNATGPLKKRIRYTSSADSAVVLTPPAIDSPPPNSCI
PSTLRLQHEIMPNPAHIYVRHPGVTTLHRSLAAHPEQLEPLALVTTKKQC
VDQAGPKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEASLSDEDLN
KTGLAPISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAV
PAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSADQSVPSIATCLEAVT
STIQTEGKVKRKKDE*

FI10001.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
net-PC 360 CG11450-PC 1..360 6..365 1819 100 Plus
net-PB 360 CG11450-PB 1..360 6..365 1819 100 Plus