Clone FI10013 Report

Search the DGRC for FI10013

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:100
Well:13
Vector:pOT2
Associated Gene/TranscriptXrp1-RC
Protein status:FI10013.pep: gold
Sequenced Size:1781

Clone Sequence Records

FI10013.complete Sequence

1781 bp assembled on 2009-01-27

GenBank Submission: BT058039.1

> FI10013.complete
CGTTAAGAAGTGTTTTTGGTCCGCGGATAAATCTGAACCGATTTTTAAAA
TCGGAACCGCTTAAAAGACAGCAAAGAATACCTGCAAGACATAGAAGCAA
CGTCATCGACGTGCAACAGCGAAAACGGAAAGGAGATTTTTACTGAGACG
GATATTCTTGACTTTGATATAAACATGTTTGCCGAGGAGGATCTGATTGA
GCTTGAGGGCAAGAAGACGGATCCCTTCAGTCCGGCAATGGACGGGATGA
ACAACGACAACCTAGACGACGACTTTCTACAATTGAATGACCTGCTTAAC
GAGGAGGAGACTTTCGACATGTCATCGATGTCCGGCGTCGGTATCGACAT
CAACCAGGAGCAGGAACTGGACTTCATCAACATATTCCACAACTCGCAGC
CAACGGCCATGCTCACCAGCTCAGAGGACCCCTATCTCGCCACCTACTCT
CAGGCCACATCCACATCCAGCACCACCAAATTCATCACGGAGGAGCCCCT
GCTCGCCGACATGACCAGCTTCGACATCAGCTATACCAGCAGCCAGGAGC
TCGGCTTCGGCCTTGTGGAGGACGTCAGCGGCAGTTTTGCCAGCAGTTGC
AGTGACGTCGCCGCGGCCATCCCAGCCCCCATCCAACACCCCATCATTAC
CAACATCAAGCGTTCTGCTCCGGCCCCGGTCGAGTCGCAGCCCACCAAGC
GCAGCCGACTGATGCTCCAGATCAAAACCGAGCTAGCTCCAGCATTCAGT
CCGACCACACCGGAGATTATCAACCAGCTCCTGAATGATGATCGGTTCGA
GGCTCCCACCACAAGTACCAGTACCAGCACCAGCAACACTTCCATCAGCA
GCAGCACCCATGCAGACATCGTAGAGGATCTACGCAGTGCCGAAGAGGAG
ACTACCACCGACTTCTCGGCGCCGAACACACCACACAGCAACTACTCAGC
CAGCTCCAGCTGTGCGGCGCCCACCTGCCAGACCGGCTATGGTGGCTTCC
TCACTGCTCCCACCTCGCCCGCCTATTCAACAGCCAGTACGTCCGTGTTC
AGCCCTTCGCCAGCCAGCGGAATCAGCGGCAAGCGGAAGCGCGGTCGCCC
TGCCAAGGATCATGCCGACGGTCCCGATCCCGTGCTCATGTCAAGCATGA
AAAGCGAGGAGGAGAGGAAGGCCTACCAGGACAGACTCAAGAACAACGAA
GCGAGCCGCGTATCGCGCCGGAAGACGAAGGTGCGCGAAGAGGAGGAGAA
GCGCGCCGAGGACACGCTATTGGCCGAGAATCTGCGACTGCGTGCCCGGG
CCGACGAAGTGGCCTCCCGGGAACGGAAGTTCAAGAAGTACCTGATGGAG
CGCCAGCGGCAGAAGAGCACTTACGTTAAGCAGGAGCAGGACTGAGATTC
TCGTAGCCATAGAATAGAAATTGCGGAGCATAAGCCTGTCATAGTACCTA
TCGTCGTCATCCAATTGTTTAGTTAGTTAAGTTGTCGTTGAAGAAGTCGA
GAAGCAGAAATCAAATTTCCATTTCCATGTGGACATCAGTTAAGCCACTT
ATTAGGCATAGTGATGGCGCCCATAGTGCGCGAGGAGTGTTTAACTTTAA
TTTTACTTTTATTATGTTTGAGAAAACTAAAAAATTTTTATACCCACGGA
TATGTTTTTCGTCCAAAGCGTAATCAAAAAAAAAAAAAAAGCACAACAAA
AAAATGATTACGAGTTCGTATGTTTTAACCCCATTGATGAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI10013.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Xrp1-RD 1740 Xrp1-RD 1..1740 1..1742 8640 99.8 Plus
Xrp1-RA 3209 Xrp1-RA 1405..3077 76..1750 8320 99.8 Plus
Xrp1-RB 3808 Xrp1-RB 2004..3676 76..1750 8320 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14749898..14750843 795..1742 4675 99.8 Plus
chr3R 27901430 chr3R 14749070..14749790 75..795 3605 100 Plus
chr3R 27901430 chr3R 14748064..14748139 1..76 365 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:22:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18925904..18926857 795..1750 4715 99.8 Plus
3R 32079331 3R 18925076..18925796 75..795 3605 100 Plus
3R 32079331 3R 18924070..18924145 1..76 365 98.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18666735..18667688 795..1750 4725 99.7 Plus
3R 31820162 3R 18665907..18666627 75..795 3605 100 Plus
3R 31820162 3R 18664901..18664976 1..76 365 98.6 Plus
Blast to na_te.dros performed 2019-03-17 00:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2537 343..545 132 57.8 Plus
roo 9092 roo DM_ROO 9092bp 1097..1160 807..870 131 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2423 807..860 126 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2367 807..858 125 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6767 811..858 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6938 807..978 122 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2376 807..870 121 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2358 807..858 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2361 807..858 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2856 807..858 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6788 807..858 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6809 807..858 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1571 806..860 113 67.3 Plus

FI10013.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:08:16 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14748064..14748139 1..76 98 -> Plus
chr3R 14749072..14749790 77..795 100 -> Plus
chr3R 14749899..14750843 796..1742 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:02 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
CG17836-RA 688..2007 76..1395 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:33:48 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RA 688..2007 76..1395 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:30:55 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RA 688..2007 76..1395 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:12:58 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RA 688..2007 76..1395 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-27 14:22:56 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
CG17836-RD 1..1740 1..1742 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:33:48 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RD 1..1740 1..1742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:55 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RD 1..1740 1..1742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:58 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
Xrp1-RD 1..1740 1..1742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:16 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18924070..18924145 1..76 98 -> Plus
3R 18925078..18925796 77..795 100 -> Plus
3R 18925905..18926849 796..1742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:16 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18924070..18924145 1..76 98 -> Plus
3R 18925078..18925796 77..795 100 -> Plus
3R 18925905..18926849 796..1742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:16 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18924070..18924145 1..76 98 -> Plus
3R 18925078..18925796 77..795 100 -> Plus
3R 18925905..18926849 796..1742 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:55 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14749792..14749867 1..76 98 -> Plus
arm_3R 14750800..14751518 77..795 100 -> Plus
arm_3R 14751627..14752571 796..1742 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:07:06 Download gff for FI10013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18665909..18666627 77..795 100 -> Plus
3R 18666736..18667680 796..1742 99   Plus
3R 18664901..18664976 1..76 98 -> Plus

FI10013.pep Sequence

Translation from 174 to 1394

> FI10013.pep
MFAEEDLIELEGKKTDPFSPAMDGMNNDNLDDDFLQLNDLLNEEETFDMS
SMSGVGIDINQEQELDFINIFHNSQPTAMLTSSEDPYLATYSQATSTSST
TKFITEEPLLADMTSFDISYTSSQELGFGLVEDVSGSFASSCSDVAAAIP
APIQHPIITNIKRSAPAPVESQPTKRSRLMLQIKTELAPAFSPTTPEIIN
QLLNDDRFEAPTTSTSTSTSNTSISSSTHADIVEDLRSAEEETTTDFSAP
NTPHSNYSASSSCAAPTCQTGYGGFLTAPTSPAYSTASTSVFSPSPASGI
SGKRKRGRPAKDHADGPDPVLMSSMKSEEERKAYQDRLKNNEASRVSRRK
TKVREEEEKRAEDTLLAENLRLRARADEVASRERKFKKYLMERQRQKSTY
VKQEQD*

FI10013.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23223-PA 404 GF23223-PA 1..403 1..405 952 59.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23086-PA 613 GG23086-PA 217..613 9..404 1068 65.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18865-PA 668 GH18865-PA 277..665 5..404 579 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Xrp1-PG 668 CG17836-PG 263..668 1..406 2053 100 Plus
Xrp1-PF 668 CG17836-PF 263..668 1..406 2053 100 Plus
Xrp1-PE 406 CG17836-PE 1..406 1..406 2053 100 Plus
Xrp1-PD 406 CG17836-PD 1..406 1..406 2053 100 Plus
Xrp1-PC 406 CG17836-PC 1..406 1..406 2053 100 Plus
Xrp1-PA 668 CG17836-PA 263..668 1..406 2053 100 Plus
Xrp1-PB 668 CG17836-PB 263..668 1..406 2053 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24722-PA 678 GI24722-PA 289..675 9..404 505 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23441-PA 726 GL23441-PA 332..726 5..405 846 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14691-PA 726 GA14691-PA 332..726 5..405 848 53.6 Plus
Dpse\GA14691-PB 385 GA14691-PB 25..385 31..405 826 53.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17897-PA 668 GM17897-PA 262..668 1..406 1703 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19257-PA 668 GD19257-PA 262..668 1..406 1805 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14549-PA 690 GJ14549-PA 285..689 9..406 616 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22747-PA 763 GK22747-PA 346..763 1..406 714 44 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25566-PA 667 GE25566-PA 260..666 1..405 1387 79.3 Plus

FI10013.hyp Sequence

Translation from 174 to 1394

> FI10013.hyp
MFAEEDLIELEGKKTDPFSPAMDGMNNDNLDDDFLQLNDLLNEEETFDMS
SMSGVGIDINQEQELDFINIFHNSQPTAMLTSSEDPYLATYSQATSTSST
TKFITEEPLLADMTSFDISYTSSQELGFGLVEDVSGSFASSCSDVAAAIP
APIQHPIITNIKRSAPAPVESQPTKRSRLMLQIKTELAPAFSPTTPEIIN
QLLNDDRFEAPTTSTSTSTSNTSISSSTHADIVEDLRSAEEETTTDFSAP
NTPHSNYSASSSCAAPTCQTGYGGFLTAPTSPAYSTASTSVFSPSPASGI
SGKRKRGRPAKDHADGPDPVLMSSMKSEEERKAYQDRLKNNEASRVSRRK
TKVREEEEKRAEDTLLAENLRLRARADEVASRERKFKKYLMERQRQKSTY
VKQEQD*

FI10013.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Xrp1-PE 406 CG17836-PE 1..406 1..406 2053 100 Plus
Xrp1-PD 406 CG17836-PD 1..406 1..406 2053 100 Plus
Xrp1-PC 406 CG17836-PC 1..406 1..406 2053 100 Plus
Xrp1-PG 668 CG17836-PG 263..668 1..406 2053 100 Plus
Xrp1-PF 668 CG17836-PF 263..668 1..406 2053 100 Plus