Clone FI11056 Report

Search the DGRC for FI11056

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:110
Well:56
Vector:pOT2
Associated Gene/TranscriptCG1138-RA
Protein status:FI11056.pep: gold
Sequenced Size:1398

Clone Sequence Records

FI11056.complete Sequence

1398 bp assembled on 2010-03-25

GenBank Submission: BT122129.1

> FI11056.complete
TTAGTTTCCGTTTTGAAGTTCACAGTTAATTGGATATTGGTTAATTTGGA
GGAATGAATTCAAGATGAATTCATTACCAATACTGCAATCAGTGGACCAA
AATTTATCGTGCAAGGCAGCAGGAATAAGTAAAATGGAAAACACTAAACC
AAATGATAAGAAACTGGCACAATCAAAGTTCGCATTCAAACATAACGGGC
CAAAAAAAGTGTTTCACTGCACGATGCAGAGTGTTTTGCAATCCGAAGAT
TGCTGGATCGCTGAGGAAGTTCTAGAAGAATCAAACGAGAAAAGCAATCT
GGAACTCGAAGATATTTACGATGAGGTGTTTCGCTTAAAGCGGCGCGTAA
ATCGACTCAATTACCAACTAGGTACCAATATACCGGAATGCCCAAAAATA
GATCCCTGCCTGGATGATCATATATTTTTGACAAATGTAAAGGAAGTTCA
TCCCGAAATTCTTCAGCTGAAGTTTGCAAGCCATAAACTACAGCACCAAC
TGACTCAGATGCAATCCGTCCGAAGATCATCCAATCTGGCCAAAAAACTG
GTACGGGATGAATACTGCAGAAGCAAGAAATTAGGGGATCAGTTGCAGAT
TGAAATTCAAAAACTAGACTCCTTTAAGCTCAAATTCGAAAAACATCAAG
GACTATGTCTTCAACGGTTTAGGTTCTTGGACCAAGATAAGTATACTGGC
AGGGAGTTCTATGAATTTATAGAAAAAAGTAATGAGATGATAACAACTCA
ACTTAAAAAGCAGATGTTAAAGAGTGAATACAAACCTTTTCGGAAGGAAG
CCGCTAGGGTGACAATCTCTTTAAAAACAGCCGCGGAAAATTTGCAAGAT
TATCTTTCAAGCGTGATAAATAACAAAAAATGTGAAATCTTCCAGAACGT
GAAAAATTCCTGTGTATCCATTCGTTCAGACCTTTAATACTTTTATATTT
TTTCGAACTCCGATTCGGCTTACTTCAAGGCGGCACCACGAGCCGCCCAA
GCTCTTGTATCACCGGCACACAGACCTACTTAGCTCGTCCACAATAAACC
CACAAAGCCCTCTTTAAATTGTTCAATTTGTCAGGATCCACGGGCCGGCC
CTCCATATGCGAATTCCTTGATTATGTTGGTCATCGGAGGAGTCGCATCC
ACGGGACGGCATCTGCCACAAATGGTGGTACCCTAATGTACATTTGACTA
GGAAGAGCATGTATTTTCTTACATGCGATGTGTTTCGGCATCCTGTAGGC
CAAAAAAGAAAAATAATATAAAAATGTTATAATTTCTATATGTATATACA
TATATGTATATATATTTTGTACGCAACTGATATATGTAAGAAATTGTATC
TATTACGTTTTAAATATATTTACATTAAAAAAAAAAAAAAAAAAAAAA

FI11056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-RA 959 CG1138-RA 23..959 1..937 4685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2422414..2423789 1376..1 6850 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:22:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6596622..6598000 1379..1 6895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6337453..6338831 1379..1 6895 100 Minus
Blast to na_te.dros performed 2019-03-16 04:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 1177..1343 77..243 122 56.5 Plus

FI11056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:24:41 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2422414..2423789 1..1376 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-25 11:35:22 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 1..873 65..937 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:57:44 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 1..873 65..937 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:28:02 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 1..873 65..937 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:37:47 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 1..873 65..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-25 11:35:19 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 23..959 1..937 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:57:44 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 23..959 1..937 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:02 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 23..1398 1..1376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:37:47 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 23..1398 1..1376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:41 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6596625..6598000 1..1376 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:41 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6596625..6598000 1..1376 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:41 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6596625..6598000 1..1376 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:02 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2422347..2423722 1..1376 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:34:33 Download gff for FI11056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6337456..6338831 1..1376 100   Minus

FI11056.hyp Sequence

Translation from 64 to 936

> FI11056.hyp
MNSLPILQSVDQNLSCKAAGISKMENTKPNDKKLAQSKFAFKHNGPKKVF
HCTMQSVLQSEDCWIAEEVLEESNEKSNLELEDIYDEVFRLKRRVNRLNY
QLGTNIPECPKIDPCLDDHIFLTNVKEVHPEILQLKFASHKLQHQLTQMQ
SVRRSSNLAKKLVRDEYCRSKKLGDQLQIEIQKLDSFKLKFEKHQGLCLQ
RFRFLDQDKYTGREFYEFIEKSNEMITTQLKKQMLKSEYKPFRKEAARVT
ISLKTAAENLQDYLSSVINNKKCEIFQNVKNSCVSIRSDL*

FI11056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-PA 290 CG1138-PA 1..290 1..290 1500 100 Plus

FI11056.pep Sequence

Translation from 64 to 936

> FI11056.pep
MNSLPILQSVDQNLSCKAAGISKMENTKPNDKKLAQSKFAFKHNGPKKVF
HCTMQSVLQSEDCWIAEEVLEESNEKSNLELEDIYDEVFRLKRRVNRLNY
QLGTNIPECPKIDPCLDDHIFLTNVKEVHPEILQLKFASHKLQHQLTQMQ
SVRRSSNLAKKLVRDEYCRSKKLGDQLQIEIQKLDSFKLKFEKHQGLCLQ
RFRFLDQDKYTGREFYEFIEKSNEMITTQLKKQMLKSEYKPFRKEAARVT
ISLKTAAENLQDYLSSVINNKKCEIFQNVKNSCVSIRSDL*

FI11056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16648-PA 344 GF16648-PA 11..274 15..269 227 28 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10402-PA 299 GG10402-PA 20..299 14..290 1037 71.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17307-PA 309 GH17307-PA 71..260 74..264 232 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-PA 290 CG1138-PA 1..290 1..290 1500 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10266-PA 317 GI10266-PA 87..268 79..261 213 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22059-PA 346 GL22059-PA 124..308 79..264 310 37.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10961-PA 344 GA10961-PA 122..306 79..264 308 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10546-PA 302 GM10546-PA 1..302 1..290 1306 84.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19542-PA 302 GD19542-PA 1..302 1..290 1295 83.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11073-PA 306 GJ11073-PA 12..261 16..269 268 31.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11525-PA 342 GK11525-PA 42..266 16..240 259 33.5 Plus