Clone FI11338 Report

Search the DGRC for FI11338

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:113
Well:38
Vector:pOT2
Associated Gene/TranscriptFcp3C-RA
Protein status:FI11338.pep: gold
Sequenced Size:2015

Clone Sequence Records

FI11338.complete Sequence

2015 bp assembled on 2009-06-09

GenBank Submission: BT088783.1

> FI11338.complete
TGTAGATGGGGCTGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATC
TCCTTGAAGCCCCGTGCCGGCACATATTCGGGCATTTTGGCAGTGTATGG
GATTTCTGGATTAAAAAAAACTTGGACGTCTTGAACGGCGAGTTGGCTGG
TGTACAAGTAAATTCCGATTGCGGCGATTTCGATGCGGATGGCAAACCCA
AAATTTAATTCCAATCTTATCTGGATCTTATCGCTGGGTGTTACGGATCA
CTTAGCCGTTGCTTATCGGCCATCGCTCCAGCAACTAGTATATTCACCAC
ACTGCCTGTCCAGCGAACCCACCACAGCCGGCTGTGTGTGCGTGCTGTTG
GGCGCACCGTGGTGAGTACGGCACTGTTAACCGTTTATCGAAACTCGAAT
TTTGTACTTAAATCATTTGAAGCAACGATAATTTTGACATTTTTATGGCA
TAAATCTATAGGATTGTTGAGTTTAACAAATAACAAACATTTAAAACTTC
GTTCAAGATACATATCGATAATCTGTATTTATATTTCAAATGTTGGCCGC
CCAATATTGATTGGTATTTCTGTTAAGTTCCATAAACAGCGCAAAAAATA
CTAACTTAACGAAAAACAAACCAAAAAATGAAAATTAAATTAAATCTATA
ATTAGATTAAAAACCAAAGCTTTGCTTATGTTGAAATGTTTGTTAATATT
ACCATATTATAACTTGTATAATTTGGATAATAATTGCTGTTTAATCGGCC
GTTTATTTATGTTATCCATTATGTTATTATAATCATAACAGTTTCATTGC
AGTTTGGCGGGATATTTAAAAAGATTTTGGAAAGTAGTTTAGAACGGTAA
GGTAAACTTTGTGCAGCTCAAGACACAACTTTTGGGTTTATTGATTACGC
ATAATTTTCGGAAGTAATTCTTTTTCTTTCTTCTCACTTTCCTCCAAATG
AATGAATTCCACTCGCTTTGTGTGAAAATTCTGCTTAATCAGACTTAACC
CTGACACAATTTTGCCGGTTCTCACAACTTGAACTTCGTTGGGGGCCGAC
TAAAATGGAAGACCGAAATCTTGAAAAACTGCAAGCCAAGTAAGAAAATG
GCTTATATAAAATGGATGGCGCAAAGGCAGAAGTATTCAGTGTTTCCGTA
GATACCAAGATGGGCGCCTTTAAAAATTCCCTGCTGCTGCTGACACTTCT
GCTAGCCATCCATTTGGAGGCATCCAAGATAGTCTACAAGAAGCCGCTCT
ATGGCAATAGCAACATCATCAAGGACAAGCGTATAAAGACGAAGCCCGTC
AAACTGGAAACCAGCACCATGAGCAGCACTGGTGTTGCAAGTAGCAGCAC
AACAGCCGAAGAGGATTGGCCCACGGCCGTTGAGTTTGTGATTATGACAA
CGCCCGCAAGCGAATTGGAAGCCAGCACGGAAACCATTGGTAACAATGGC
ACCACCGAAACGACCGTTGGCGAGGCACCCATCATCGGATCGTCGGAAGG
ATCCACACGATCGATGGAGCCAACCACCGCGAGTCCGCTGATGAGCACAA
ACCCATCGAGCAGCAGCAGTCTGGTTAGCACCATTCCCTTGCCACCGACA
GCGGGACTGCCTGTGCAGGATAATCAGCCAGTGCCGTGCACATGCGGCGT
CTTCCTCTCCTCGCAAATCCCAAATGGCTTGCCGACAAAGCCACTTATCC
ACCAGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCGCAAGCAG
TGTCAAACCAAATGCCTAGAGACGATCGTACAACATCTGCCGAATTCCGC
AAATATAGTATGCTCCGCACTGGGTCACGATTGTCACAAGGAACGGGCCT
ATTTGTTCATCAAGAACTGTCACAATCAATGGGTTAATACCAATCTGCAG
GCGGGCAGGGAGTACTGTTGTCGCTCTGGCGTTCCCTACCGTTGCCCATT
GATGGGTTAAGCACTGTGCAAATGAAATAAATATATGATATGACAAAAAA
AAAAAAAAAAAAAAA

FI11338.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-RA 2062 Fcp3C-RA 25..2022 1..1998 9990 100 Plus
CG3939-RA 980 CG3939-RA 206..480 275..1 1375 100 Minus
CG3939-RA 980 CG3939-RA 1..113 387..275 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3068016..3068907 1164..275 4275 98.9 Minus
chrX 22417052 chrX 3067342..3067953 1774..1163 3060 100 Minus
chrX 22417052 chrX 3069000..3069274 275..1 1330 98.9 Minus
chrX 22417052 chrX 3067050..3067270 1994..1774 1105 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:23:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3174342..3175231 1164..275 4450 100 Minus
X 23542271 X 3173668..3174279 1774..1163 3060 100 Minus
X 23542271 X 3175324..3175598 275..1 1375 100 Minus
X 23542271 X 3173372..3173596 1998..1774 1125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3182440..3183329 1164..275 4450 100 Minus
X 23527363 X 3181766..3182377 1774..1163 3060 100 Minus
X 23527363 X 3183422..3183696 275..1 1375 100 Minus
X 23527363 X 3181470..3181694 1998..1774 1125 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:16:12 has no hits.

FI11338.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:17:11 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3067050..3067269 1775..1994 100 <- Minus
chrX 3067342..3067952 1164..1774 100 <- Minus
chrX 3068017..3068906 276..1163 98 <- Minus
chrX 3069000..3069274 1..275 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:18 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1960 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:09 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1960 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:15 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1960 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:15 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..849 1112..1960 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-09 09:54:35 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..1994 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:09 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..1994 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:15 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..963 1032..1994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:15 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
Fcp3C-RA 1..963 1032..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:11 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
X 3173376..3173595 1775..1994 100 <- Minus
X 3173668..3174278 1164..1774 100 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
X 3175324..3175598 1..275 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:11 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
X 3173376..3173595 1775..1994 100 <- Minus
X 3173668..3174278 1164..1774 100 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
X 3175324..3175598 1..275 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:11 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
X 3173376..3173595 1775..1994 100 <- Minus
X 3173668..3174278 1164..1774 100 <- Minus
X 3174343..3175230 276..1163 100 <- Minus
X 3175324..3175598 1..275 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:15 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3067409..3067628 1775..1994 100 <- Minus
arm_X 3067701..3068311 1164..1774 100 <- Minus
arm_X 3068376..3069263 276..1163 100 <- Minus
arm_X 3069357..3069631 1..275 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:22:34 Download gff for FI11338.complete
Subject Subject Range Query Range Percent Splice Strand
X 3181474..3181693 1775..1994 100 <- Minus
X 3181766..3182376 1164..1774 100 <- Minus
X 3182441..3183328 276..1163 100 <- Minus
X 3183422..3183696 1..275 100   Minus

FI11338.pep Sequence

Translation from 1111 to 1959

> FI11338.pep
MDGAKAEVFSVSVDTKMGAFKNSLLLLTLLLAIHLEASKIVYKKPLYGNS
NIIKDKRIKTKPVKLETSTMSSTGVASSSTTAEEDWPTAVEFVIMTTPAS
ELEASTETIGNNGTTETTVGEAPIIGSSEGSTRSMEPTTASPLMSTNPSS
SSSLVSTIPLPPTAGLPVQDNQPVPCTCGVFLSSQIPNGLPTKPLIHQEL
DHMFPCNAIGRKQCQTKCLETIVQHLPNSANIVCSALGHDCHKERAYLFI
KNCHNQWVNTNLQAGREYCCRSGVPYRCPLMG*

FI11338.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19616-PA 276 GF19616-PA 1..276 17..282 855 67.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18592-PA 250 GG18592-PA 1..250 17..282 967 78.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24271-PA 282 GH24271-PA 10..282 25..282 644 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-PA 282 CG4015-PA 1..282 1..282 1478 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10950-PA 274 GI10950-PA 27..274 37..282 675 56.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19781-PA 261 GL19781-PA 19..261 34..282 742 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17864-PA 261 GA17864-PA 19..261 34..282 742 62.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18842-PA 260 GM18842-PA 1..260 17..282 1091 89.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16341-PA 260 GD16341-PA 1..260 17..282 1118 87.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15268-PA 274 GJ15268-PA 28..274 26..282 686 55.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10351-PA 263 GK10351-PA 19..263 34..282 727 59.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16905-PA 265 GE16905-PA 1..265 17..282 1040 82.2 Plus

FI11338.hyp Sequence

Translation from 1111 to 1959

> FI11338.hyp
MDGAKAEVFSVSVDTKMGAFKNSLLLLTLLLAIHLEASKIVYKKPLYGNS
NIIKDKRIKTKPVKLETSTMSSTGVASSSTTAEEDWPTAVEFVIMTTPAS
ELEASTETIGNNGTTETTVGEAPIIGSSEGSTRSMEPTTASPLMSTNPSS
SSSLVSTIPLPPTAGLPVQDNQPVPCTCGVFLSSQIPNGLPTKPLIHQEL
DHMFPCNAIGRKQCQTKCLETIVQHLPNSANIVCSALGHDCHKERAYLFI
KNCHNQWVNTNLQAGREYCCRSGVPYRCPLMG*

FI11338.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fcp3C-PA 282 CG4015-PA 1..282 1..282 1478 100 Plus