Clone FI11703 Report

Search the DGRC for FI11703

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:117
Well:3
Vector:pBS SK-
Associated Gene/Transcriptvtd-RA
Protein status:FI11703.pep: gold
Sequenced Size:2265

Clone Sequence Records

FI11703.complete Sequence

2265 bp assembled on 2009-10-13

GenBank Submission: BT100037.1

> FI11703.complete
ATTTTATATAGATACAAATATTTACTAGTTTAAAATGTTCTATGAGCACA
TTATTTTGGCCAAGAAAGGCCCCCTAGCCAGGATCTGGTTGGCAGCACAT
TGGGACAAAAAAATTACAAAGGCCCATGTATTTGAAACTAATATTGAAAA
ATCAGTGGAAGGGATTTTGCAACCAAAAGTAAAATTAGCGTTGAGAACGT
CTGGACATTTATTGCTAGGTGTTGTTCGCATTTATTCCAGAAAAGCGAAG
TATTTATTAGCTGATTGCAATGAAGCCTTTGTCAAGATTAAGATGGCTTT
TCGACCAGGCATGGTCGACTTACCAGAAGGGCACAGAGAAGCTAATGTTA
ATGCAATAACACTCCCAGAAGTTTTTCATGACTTTGATACAGCCCTGCCC
GAATTAAACGATATTGATATTGAGGCTCAGTTTTCTATAAATCAGTCCAG
AGCTGACGAGATAACAATGAGAGAAGATTACGGTAGTTTGTCTCTTTCCT
TACAAGATGACGGATTTGGTGATATAGGCTTTGAAGCAGAAACGCCTGAA
ATTATACGATGCTCTATACCTTCAAATATTAATGATAAAATATTTGATAA
TGACGTTTTGGAAAATATTGAGTCTCTGGATCCACATTCATTGGACGCCC
ATGCTGATATGCCTGGTTCTCGATTGGATGGTGATGGGTTTGGAGATTCT
TTTGGACAACCAGCCCTTTTTGAAGACGATCTTTTTGGTGATCCTTCTCA
ACCAGTTGAGCAGATTACAAAAGAATCTACTACTGTTCTCAACGCAGATG
ATTCTGATGAAGACGCCATTGATAATATTCATAATGTCCCTTCGCCTGCA
ACCTCGCTCGTTAATTCGATTGAAGATGAGAAAGAGGAAAATAATTTAAA
TGGACATGCAAGTGTGTCCGAAAATGTGCCAATGAATGAAATAACGCTTG
TTCAAAACGAGGATGAGGGATTTGCGTTAGCTCCTTTAGATGTCTCAATG
TATAAAGGCGTTACAAAAGCCAAACGCAAAAGAAAACTTATTATTGACGA
AATAAAAAATATTTCTGGAGAGGAAATGAAGGCTCAGTTAGCCGACACAT
CTGATATATTAACCACACTTGATTTAGCCCCACCAACAAAAAGATTAATG
TATTGGAAAGAAACTGGAGGTGTCGAAAAACTTTTTTCATTACCATCGCG
ATCCATACCAGCTAGAGCTTTGTTTGGTAATTACAATAGACAGTTGTTTT
CGCATTCAACATTCTTTGAGGACTTCTCGAGTGTTGTGCCAATGGAAATT
CTTGCACTGGAATTTTATACCAAAGAGAACGAGAACGCATTAATTATTTT
TAATAAAAAAGGTCGCAAACGTAAGAATGATAATATGTCCAATTTGTTTT
TGGACCATGTCCCCGATTCAGTTGTTCAAAGTTTGGAAGCTCCGGAAGTC
CTGAGAGCGAATCATAAATCTCTAGGGGTATCTACCGTTTCTGTGGAGAT
TGTATCAAAAGAGCAAGAAAGCATTTCATGTCAAAATGAATTAACATTTT
TTGATAATATGCGAAGTCCGGACCTCTTGTCCTTAAATGAAATGGAACAG
TTCTCATCAATAAATGAGCTACCTTTAACACCAAGAAACATGAATCATGA
AATGGGTGACGATTTTAATCAAGGAGACTCAACGCCAGCTGGGTTGGATC
ATGGTCATGCCACTCCGCAGCATGGAAATATTGGCGAGATGGATCACGAC
TCTGTTATACCGACAAAAAAGACTGCAGTCATTTTAAATGAATCTGTGGG
TACATCTGTACTAAGTGACAATGGCGTTTCAAAAAGGACAAATAATATTT
TAAAAGGATGGGACAACTATGAAATTCCCAGTTTCGTTGGCCAGAATCAT
GGTGATGAACAAATGGAAAATGAAACCGATGAGCAATTTGAAGAACGTGT
TTTAAACAAGAGAGCCGCCCACCTTTTTATTGACGTAAGAGCACATTTTA
TCGCCAAGGACAGCTTGGAACTTTCTCAGCTTACGTCAGGAAATTCCAGA
AAACAGGCGGCACAAAAATTTTATTCCCTCCTCGTCTTAAAGAAGTTTAA
GGTGCTTCACATTGATCAATCTGCTCCCTATGCAGATATTACTATTACTC
GAGGACCAACGTTCGAAAACCCAAAAATTTAATAAGTTGAATGTAAATCT
GTTTTAATTTATATTGATAATTTATTTTGAACATAAGTACAAACTCAAAA
AAAAAAAAAAAAAAA

FI11703.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
vtd-RA 2401 vtd-RA 74..2322 1..2249 11245 100 Plus
vtd.a 2289 vtd.a 74..1967 1..1894 9470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3LHet 2555433 chr3LHet 2254268..2255020 1142..1894 3765 100 Plus
chr3LHet 2555433 chr3LHet 2243957..2244250 291..584 1470 100 Plus
chr3LHet 2555433 chr3LHet 2243591..2243882 1..292 1460 100 Plus
chr3LHet 2555433 chr3LHet 2253952..2254208 887..1143 1285 100 Plus
chr3LHet 2555433 chr3LHet 2265132..2265324 2054..2246 965 100 Plus
chr3LHet 2555433 chr3LHet 2253720..2253899 708..887 900 100 Plus
chr3LHet 2555433 chr3LHet 2263333..2263497 1893..2057 825 100 Plus
chr3LHet 2555433 chr3LHet 2247415..2247538 584..707 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:23:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27146943..27147695 1142..1894 3765 100 Plus
3L 28110227 3L 27136944..27137237 291..584 1470 100 Plus
3L 28110227 3L 27136578..27136869 1..292 1460 100 Plus
3L 28110227 3L 27146627..27146883 887..1143 1285 100 Plus
3L 28110227 3L 27157807..27158002 2054..2249 980 100 Plus
3L 28110227 3L 27146395..27146574 708..887 900 100 Plus
3L 28110227 3L 27156008..27156172 1893..2057 825 100 Plus
3L 28110227 3L 27140119..27140242 584..707 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 27140043..27140795 1142..1894 3765 100 Plus
3L 28103327 3L 27130044..27130337 291..584 1470 100 Plus
3L 28103327 3L 27129678..27129969 1..292 1460 100 Plus
3L 28103327 3L 27139727..27139983 887..1143 1285 100 Plus
3L 28103327 3L 27150907..27151102 2054..2249 980 100 Plus
3L 28103327 3L 27139495..27139674 708..887 900 100 Plus
3L 28103327 3L 27149108..27149272 1893..2057 825 100 Plus
3L 28103327 3L 27133219..27133342 584..707 620 100 Plus
Blast to na_te.dros performed 2019-03-16 12:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 309..359 2228..2176 143 77.4 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 4232..4326 676..580 127 64.3 Minus

FI11703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:20:44 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
chr3LHet 2247415..2247538 584..707 100 -> Plus
chr3LHet 2243591..2243882 1..292 100 -> Plus
chr3LHet 2243959..2244249 293..583 100 -> Plus
chr3LHet 2253720..2253899 708..887 100 -> Plus
chr3LHet 2253953..2254208 888..1143 100 -> Plus
chr3LHet 2254270..2255020 1144..1894 100 -> Plus
chr3LHet 2263335..2263496 1895..2056 100 -> Plus
chr3LHet 2265135..2265324 2057..2246 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:45 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
Rad21-RA 1..2148 35..2182 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:43:39 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 1..2148 35..2182 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:28:25 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 1..2148 35..2182 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:13 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 1..2148 35..2182 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:44 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
Rad21-RA 60..2305 1..2246 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:43:38 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 60..2305 1..2246 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:28:25 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 54..2299 1..2246 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:13 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 54..2299 1..2246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:44 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27136578..27136869 1..292 100 -> Plus
3L 27136946..27137236 293..583 100 -> Plus
3L 27140119..27140242 584..707 100 -> Plus
3L 27146395..27146574 708..887 100 -> Plus
3L 27146628..27146883 888..1143 100 -> Plus
3L 27146945..27147695 1144..1894 100 -> Plus
3L 27156010..27156171 1895..2056 100 -> Plus
3L 27157810..27157999 2057..2246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:44 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27136578..27136869 1..292 100 -> Plus
3L 27136946..27137236 293..583 100 -> Plus
3L 27140119..27140242 584..707 100 -> Plus
3L 27146395..27146574 708..887 100 -> Plus
3L 27146628..27146883 888..1143 100 -> Plus
3L 27146945..27147695 1144..1894 100 -> Plus
3L 27156010..27156171 1895..2056 100 -> Plus
3L 27157810..27157999 2057..2246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:44 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27136578..27136869 1..292 100 -> Plus
3L 27136946..27137236 293..583 100 -> Plus
3L 27140119..27140242 584..707 100 -> Plus
3L 27146395..27146574 708..887 100 -> Plus
3L 27146628..27146883 888..1143 100 -> Plus
3L 27146945..27147695 1144..1894 100 -> Plus
3L 27156010..27156171 1895..2056 100 -> Plus
3L 27157810..27157999 2057..2246 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:28:25 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 2243630..2243921 1..292 100 -> Plus
3LHet 2243998..2244288 293..583 100 -> Plus
3LHet 2247454..2247577 584..707 100 -> Plus
3LHet 2253759..2253938 708..887 100 -> Plus
3LHet 2253992..2254247 888..1143 100 -> Plus
3LHet 2254309..2255059 1144..1894 100 -> Plus
3LHet 2263374..2263535 1895..2056 100 -> Plus
3LHet 2265174..2265363 2057..2246 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:24:30 Download gff for FI11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27129678..27129969 1..292 100 -> Plus
3L 27130046..27130336 293..583 100 -> Plus
3L 27133219..27133342 584..707 100 -> Plus
3L 27139495..27139674 708..887 100 -> Plus
3L 27139728..27139983 888..1143 100 -> Plus
3L 27140045..27140795 1144..1894 100 -> Plus
3L 27149110..27149271 1895..2056 100 -> Plus
3L 27150910..27151099 2057..2246 100   Plus

FI11703.hyp Sequence

Translation from 34 to 2181

> FI11703.hyp
MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVK
LALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGH
REANVNAITLPEVFHDFDTALPELNDIDIEAQFSINQSRADEITMREDYG
SLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIFDNDVLENIESLDP
HSLDAHADMPGSRLDGDGFGDSFGQPALFEDDLFGDPSQPVEQITKESTT
VLNADDSDEDAIDNIHNVPSPATSLVNSIEDEKEENNLNGHASVSENVPM
NEITLVQNEDEGFALAPLDVSMYKGVTKAKRKRKLIIDEIKNISGEEMKA
QLADTSDILTTLDLAPPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNY
NRQLFSHSTFFEDFSSVVPMEILALEFYTKENENALIIFNKKGRKRKNDN
MSNLFLDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQ
NELTFFDNMRSPDLLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQGDST
PAGLDHGHATPQHGNIGEMDHDSVIPTKKTAVILNESVGTSVLSDNGVSK
RTNNILKGWDNYEIPSFVGQNHGDEQMENETDEQFEERVLNKRAAHLFID
VRAHFIAKDSLELSQLTSGNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYA
DITITRGPTFENPKI*

FI11703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
vtd-PA 715 CG17436-PA 1..715 1..715 3685 100 Plus
vtd-PB 633 CG17436-PB 1..620 1..620 3201 100 Plus

FI11703.pep Sequence

Translation from 34 to 2181

> FI11703.pep
MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVK
LALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGH
REANVNAITLPEVFHDFDTALPELNDIDIEAQFSINQSRADEITMREDYG
SLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIFDNDVLENIESLDP
HSLDAHADMPGSRLDGDGFGDSFGQPALFEDDLFGDPSQPVEQITKESTT
VLNADDSDEDAIDNIHNVPSPATSLVNSIEDEKEENNLNGHASVSENVPM
NEITLVQNEDEGFALAPLDVSMYKGVTKAKRKRKLIIDEIKNISGEEMKA
QLADTSDILTTLDLAPPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNY
NRQLFSHSTFFEDFSSVVPMEILALEFYTKENENALIIFNKKGRKRKNDN
MSNLFLDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQ
NELTFFDNMRSPDLLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQGDST
PAGLDHGHATPQHGNIGEMDHDSVIPTKKTAVILNESVGTSVLSDNGVSK
RTNNILKGWDNYEIPSFVGQNHGDEQMENETDEQFEERVLNKRAAHLFID
VRAHFIAKDSLELSQLTSGNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYA
DITITRGPTFENPKI*

FI11703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20565-PA 711 GF20565-PA 1..711 1..715 2798 75 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13400-PA 643 GH13400-PA 1..643 87..715 2063 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
vtd-PA 715 CG17436-PA 1..715 1..715 3685 100 Plus
vtd-PB 633 CG17436-PB 1..620 1..620 3201 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20760-PA 640 GI20760-PA 1..640 87..715 2176 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12358-PA 709 GL12358-PA 1..709 1..715 2769 75.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30217-PA 343 GA30217-PA 1..343 372..715 1215 67.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22816-PA 698 GD22816-PA 1..683 1..685 3499 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13343-PA 639 GJ13343-PA 1..639 87..715 2178 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11943-PA 700 GK11943-PA 1..700 1..715 2475 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19751-PA 715 GE19751-PA 1..715 1..715 3488 90.6 Plus