Clone FI12033 Report

Search the DGRC for FI12033

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:120
Well:33
Vector:pOT2
Associated Gene/TranscriptRabX2-RA
Protein status:FI12033.pep: gold
Sequenced Size:751

Clone Sequence Records

FI12033.complete Sequence

751 bp assembled on 2010-03-24

GenBank Submission: BT122111.1

> FI12033.complete
CCGACTTGACGATGAGCCACTTCGACTATCTGTTTAAGGTTCTCGTCCTG
GGTGACAGCGGCGTGGGCAAATCCTGCCTGCTAATGCGTTTCTCGGATGA
CCGATTCACCGAGAAATACCTGAGAACGATGGGCATAGATGTCAAGGCGC
GCAGCGTGGAGCTGGTCAGTCGGGTGATGATGCTGCAGGTCTGGGATACC
TCCGGCGACAAGCGCTTCAATTCGCTGATGCCGTCCAATTATCGCAGTGC
CCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCCAAA
ACATCGATGGCTGGATGAAGGAGATACGGCGCATGTGTCCGGATAAGGTA
ACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCAGGT
GAGCATGGAGCAGGGGTTCAACTATGCCCATCGTGGGGCACTCGGCTTTG
AAGAGGTTTCCGCCAAGAGTGGAATGAATGTATATGACATATTTAGCTCG
TTGGCAATGGACATATACCATCGTTATGTACTTCACAACCCGATCAGCCC
GATGCCATCTGAGCAGGAAGAGGAGGACGCTGCAGAGTCACCGGATTAAC
CAATTAATCTAATCTAGCACAGATCTGCAGAGGGCCAATGAATGACACCA
ATACCTGCTGTTAAGCATCTCGACTTCATTTGACATTTTTATCATTAATA
TAAATTAAAATTTCTATAATGTCTACTTGCACAACAAAAAAAAAAAAAAA
A

FI12033.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-RA 732 RabX2-RA 1..732 1..732 3660 100 Plus
RabX2.a 681 RabX2.a 1..349 1..349 1745 100 Plus
RabX2.a 681 RabX2.a 346..681 397..732 1680 100 Plus
Rab9Db-RA 871 Rab9Db-RA 241..702 179..641 1565 90.1 Plus
Rab9Db-RA 871 Rab9Db-RA 57..217 1..161 370 81.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10308962..10309696 1..735 3675 100 Plus
chrX 22417052 chrX 10513890..10514535 641..1 1775 86.3 Minus
chrX 22417052 chrX 10552491..10553136 641..1 1745 86 Minus
chrX 22417052 chrX 10480537..10481182 1..641 1730 85.8 Plus
chrX 22417052 chrX 10841643..10842288 641..1 1730 85.8 Minus
chrX 22417052 chrX 10843050..10843744 703..1 1715 83.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:23:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10417485..10418221 1..737 3685 100 Plus
X 23542271 X 10622524..10623169 641..1 1775 86.3 Minus
X 23542271 X 10661124..10661769 641..1 1745 86 Minus
X 23542271 X 10589171..10589816 1..641 1730 85.8 Plus
X 23542271 X 10950329..10950974 641..1 1730 85.8 Minus
X 23542271 X 10951736..10952430 703..1 1715 83.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10425583..10426319 1..737 3685 100 Plus
X 23527363 X 10630622..10631083 641..179 1565 90.1 Minus
X 23527363 X 10597453..10597914 179..641 1550 89.9 Plus
X 23527363 X 10669222..10669683 641..179 1550 89.9 Minus
X 23527363 X 10958427..10958888 641..179 1550 89.9 Minus
X 23527363 X 10960005..10960528 524..1 1525 86 Minus
X 23527363 X 10631107..10631267 161..1 370 81.9 Minus
X 23527363 X 10669707..10669867 161..1 355 81.3 Minus
X 23527363 X 10597269..10597378 1..110 340 87.2 Plus
X 23527363 X 10958963..10959072 110..1 340 87.2 Minus
X 23527363 X 10959816..10959893 718..644 245 89.7 Minus
Blast to na_te.dros performed 2019-03-16 18:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 573..665 711..624 109 64.9 Minus

FI12033.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:27:54 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10308962..10309696 1..735 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-24 12:35:32 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..588 12..599 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:57:22 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..588 12..599 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:45 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..588 12..599 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:38 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..588 12..599 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-24 12:35:32 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..588 12..599 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:57:22 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 1..735 1..735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:45 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 57..791 1..735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:38 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 57..791 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:27:54 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
X 10417485..10418219 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:27:54 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
X 10417485..10418219 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:27:54 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
X 10417485..10418219 1..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:45 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10311518..10312252 1..735 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:34:07 Download gff for FI12033.complete
Subject Subject Range Query Range Percent Splice Strand
X 10425583..10426317 1..735 100   Plus

FI12033.hyp Sequence

Translation from 2 to 598

> FI12033.hyp
DLTMSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKAR
SVELVSRVMMLQVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQN
IDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQGFNYAHRGALGFE
EVSAKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPD*

FI12033.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-PA 195 CG2885-PA 1..195 4..198 1018 100 Plus
Rab9Db-PA 197 CG9807-PA 1..197 4..198 694 72.2 Plus
Rab9E-PA 197 CG32673-PA 1..197 4..198 691 71.7 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 4..198 691 72.2 Plus
Rab9D-PA 197 CG32678-PA 1..197 4..198 688 71.7 Plus

FI12033.pep Sequence

Translation from 2 to 598

> FI12033.pep
DLTMSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKAR
SVELVSRVMMLQVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQN
IDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQGFNYAHRGALGFE
EVSAKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPD*

FI12033.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19340-PA 237 GF19340-PA 1..181 4..188 544 55.7 Plus
Dana\GF17263-PA 205 GF17263-PA 7..175 6..174 451 47.9 Plus
Dana\GF10843-PA 207 GF10843-PA 5..194 7..186 427 44.2 Plus
Dana\GF20241-PA 204 GF20241-PA 6..173 7..174 413 45.8 Plus
Dana\GF20451-PA 200 GF20451-PA 5..183 7..191 412 42.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18360-PA 218 GG18360-PA 1..191 4..195 658 64.1 Plus
Dere\GG14761-PA 205 GG14761-PA 7..175 6..174 451 47.9 Plus
Dere\GG13365-PA 207 GG13365-PA 5..194 7..186 427 44.2 Plus
Dere\GG18010-PA 201 GG18010-PA 5..190 7..198 416 41.7 Plus
Dere\GG19277-PA 204 GG19277-PA 6..170 7..171 409 46.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18937-PA 205 GH18937-PA 7..175 6..174 449 47.9 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..182 7..180 426 45.5 Plus
Dgri\GH24326-PA 201 GH24326-PA 4..189 6..197 422 42.2 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..173 7..174 408 45.8 Plus
Dgri\GH21751-PA 213 GH21751-PA 3..170 7..174 369 39.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-PA 195 CG2885-PA 1..195 4..198 1018 100 Plus
Rab9Db-PA 197 CG9807-PA 1..197 4..198 694 72.2 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 4..198 691 72.2 Plus
Rab9E-PA 197 CG32673-PA 1..197 4..198 691 71.7 Plus
Rab9D-PA 197 CG32678-PA 1..197 4..198 688 71.7 Plus
Rab9Fb-PA 214 CG32670-PA 1..194 4..198 687 67.2 Plus
Rab1-PA 205 CG3320-PA 8..175 7..174 432 48.2 Plus
Rab35-PB 201 CG9575-PB 5..190 7..198 415 41.7 Plus
Rab35-PD 201 CG9575-PD 5..190 7..198 415 41.7 Plus
Rab35-PA 201 CG9575-PA 5..190 7..198 415 41.7 Plus
Rab8-PC 207 CG8287-PC 5..169 7..171 409 47.3 Plus
Rab8-PA 207 CG8287-PA 5..169 7..171 409 47.3 Plus
Rab10-PA 204 CG17060-PA 6..167 7..168 395 46.9 Plus
Rab19-PB 219 CG7062-PP3-RB 17..192 6..179 364 38.6 Plus
Rab19-PA 219 CG7062-PA 17..192 6..179 364 38.6 Plus
Rab2-PB 213 CG3269-PB 3..170 7..174 362 39.9 Plus
Rab2-PA 213 CG3269-PA 3..170 7..174 362 39.9 Plus
Rab35-PC 190 CG9575-PC 8..179 21..198 354 39.3 Plus
Rab3-PB 220 CG7576-PB 12..178 1..167 350 38.9 Plus
Rab3-PA 220 CG7576-PA 12..178 1..167 350 38.9 Plus
Rab11-PA 214 CG5771-PA 8..173 7..172 347 39.2 Plus
Rab11-PB 214 CG5771-PB 8..173 7..172 347 39.2 Plus
Rab26-PE 410 CG34410-PE 209..382 7..178 346 41.4 Plus
Rab26-PD 410 CG34410-PD 209..382 7..178 346 41.4 Plus
Rab26-PC 410 CG34410-PC 209..382 7..178 346 41.4 Plus
Rab14-PD 215 CG4212-PD 7..173 6..172 341 37.1 Plus
Rab14-PA 215 CG4212-PA 7..173 6..172 341 37.1 Plus
Rab14-PB 239 CG4212-PB 31..197 6..172 341 37.1 Plus
RabX4-PA 213 CG31118-PA 9..170 11..171 336 41.4 Plus
Rab4-PA 213 CG4921-PA 5..162 7..164 332 41.1 Plus
Rab4-PB 213 CG4921-PB 5..162 7..164 332 41.1 Plus
Rab30-PD 223 CG9100-PD 1..167 4..171 324 37.5 Plus
Rab30-PC 223 CG9100-PC 1..167 4..171 324 37.5 Plus
Rab30-PB 223 CG9100-PB 1..167 4..171 324 37.5 Plus
Rab30-PA 223 CG9100-PA 1..167 4..171 324 37.5 Plus
Rab39-PB 218 CG12156-PB 6..178 7..174 321 41.6 Plus
Rab39-PA 218 CG12156-PA 6..178 7..174 321 41.6 Plus
Rab5-PI 219 CG3664-PI 30..187 11..168 316 39.2 Plus
Rab5-PH 219 CG3664-PH 30..187 11..168 316 39.2 Plus
Rab5-PG 219 CG3664-PG 30..187 11..168 316 39.2 Plus
Rab5-PE 219 CG3664-PE 30..187 11..168 316 39.2 Plus
Rab5-PC 219 CG3664-PC 30..187 11..168 316 39.2 Plus
Rab5-PD 219 CG3664-PD 30..187 11..168 316 39.2 Plus
Rab5-PF 219 CG3664-PF 30..187 11..168 316 39.2 Plus
Rab5-PB 219 CG3664-PB 30..187 11..168 316 39.2 Plus
Rab5-PA 219 CG3664-PA 30..187 11..168 316 39.2 Plus
Rab6-PB 208 CG6601-PB 13..170 11..168 311 41.1 Plus
Rab6-PA 208 CG6601-PA 13..170 11..168 311 41.1 Plus
Rab21-PC 222 CG17515-PC 14..203 11..198 304 33.7 Plus
Rab21-PD 222 CG17515-PD 14..203 11..198 304 33.7 Plus
Rab27-PC 230 CG14791-PC 8..180 7..174 302 40.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10837-PA 205 GI10837-PA 7..175 6..174 459 48.5 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..182 7..180 426 45.5 Plus
Dmoj\GI14806-PA 201 GI14806-PA 4..183 6..191 424 43 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..173 7..174 413 46.4 Plus
Dmoj\GI19298-PA 213 GI19298-PA 3..170 7..174 370 39.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27164-PA 205 GL27164-PA 7..175 6..174 451 47.9 Plus
Dper\GL15675-PA 207 GL15675-PA 5..182 7..180 424 45.5 Plus
Dper\GL12921-PA 200 GL12921-PA 5..183 7..191 404 41.6 Plus
Dper\GL14977-PA 211 GL14977-PA 3..172 11..180 404 44.1 Plus
Dper\GL22545-PA 219 GL22545-PA 17..192 6..179 379 38.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17362-PA 205 GA17362-PA 7..175 6..174 451 47.9 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..182 7..180 424 45.5 Plus
Dpse\GA21885-PA 200 GA21885-PA 5..183 7..191 410 42.2 Plus
Dpse\GA22382-PA 205 GA22382-PA 3..172 11..180 406 43.5 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..173 7..174 406 45.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11275-PA 215 GM11275-PA 1..195 4..198 700 66.3 Plus
Dsec\GM11294-PA 206 GM11294-PA 1..197 4..189 575 54.8 Plus
Dsec\GM11425-PA 169 GM11425-PA 1..161 4..164 543 61.5 Plus
Dsec\GM15089-PA 205 GM15089-PA 7..175 6..174 451 47.9 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..194 7..186 427 44.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11278-PA 215 GD11278-PA 1..195 4..198 700 66.3 Plus
Dsim\GD16021-PA 206 GD16021-PA 1..197 4..189 585 55.8 Plus
Dsim\GD16978-PA 207 GD16978-PA 1..186 4..198 585 57.4 Plus
Dsim\GD19996-PA 205 GD19996-PA 7..175 6..174 451 47.9 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..194 7..186 427 44.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14443-PA 205 GJ14443-PA 7..175 6..174 459 48.5 Plus
Dvir\GJ14874-PA 202 GJ14874-PA 5..184 9..187 430 45 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..182 7..180 426 45.5 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 4..183 6..191 418 42.5 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..173 7..174 410 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12772-PA 205 GK12772-PA 7..175 6..174 451 47.9 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..182 7..180 425 45.5 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..183 7..191 414 42.7 Plus
Dwil\GK20101-PA 216 GK20101-PA 8..175 9..176 413 45.2 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..173 7..174 411 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17848-PA 219 GE17848-PA 1..191 4..195 658 63.5 Plus
Dyak\Rab1-PA 205 GE25003-PA 7..175 6..174 451 47.9 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..194 7..186 427 44.2 Plus
Dyak\GE17342-PA 201 GE17342-PA 5..190 7..198 416 41.7 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..170 7..171 409 46.7 Plus