Clone FI12301 Report

Search the DGRC for FI12301

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:123
Well:1
Vector:pCR2.1
Associated Gene/TranscriptRunxB-RB
Protein status:FI12301.pep: wuzgold
Sequenced Size:943

Clone Sequence Records

FI12301.complete Sequence

943 bp assembled on 2009-08-28

GenBank Submission: BT099659.1

> FI12301.complete
GAAGTTATCAGTCGACATGCACATTTCTGCTGAGGTCAGTTCGACCACCT
CAAATCAAATACAGCAACAGCAGCAGCAACATCAGCAGCAGCAGCAACAT
CAGTTGTTGCAGCACCAGCAACAACAGACAGCAACAACGACCACAACGAA
GCGGCGGAATGCTGAGTCCTCTGCCAGCAGCAATAACAACAACAACAACA
ATACCAGCACCACCAACAATAATAATACTAACAATAACAACAACAGCACC
ACGAACAACAACAACAACAACAATAATAATAATGTTAAAACAAAGCCCGT
GGACACGAGTCCCTACTTAACCCCCGAGAATCTCATCGAGCGCACCGTCG
ACGTCCTGCTCGCCGAACATCCTGGCGAGCTGGTCAAGACGGGATCTCCA
CATGTGGTCTGCACCACATTGCCCACGCACTGGCGCTCAAACAAAACTCT
ACCGATCGCCTTCAAGGTTTTGGCACTGGGCGAGGTCATGGATGGCACTA
TAGTCACCATTCGAGCCGGAAACGATGAGAACTTCTGCGGGGAACTGAGA
AACTGCACGGCCGTGATGAAAAATCAGGTGGCCAAGTTCAATGATCTGCG
GTTCGTGGGCAGAAGCGGAAGGGGCAAGAGCTTCACACTGACGATTGTCA
TCTCAACGAACCCCATCCAGATAGCCACCTACACCAAGGCCATCAAGGTG
ACCGTGGATGGGCCGAGGGAACCAAGATCGAAGGTGCGACACCAGGGATT
CCATCCGTTCGCCTTTGGGCCGCAACGTTTCGGACCGGATCCACTTATGG
CCGGATTGCCCTTCAAGTTGCCAGGTAAGCGGAAAAGGTGGAGGAGATTC
CGGGGGAATCAGGGATTCGGAAGGCTTAAGCGCAAACATCGCCGCCACAC
TGAGAGAAATTCGGGCTATTCGATTAGTCTAAAATGAAAGCTT

FI12301.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
RunxB-RB 937 RunxB-RB 17..937 17..937 4605 100 Plus
RunxA-RA 2040 RunxA-RA 391..665 440..714 460 77.8 Plus
RunxA.a 2055 RunxA.a 391..665 440..714 460 77.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20406286..20406677 17..408 1960 100 Plus
chrX 22417052 chrX 20418991..20419305 623..937 1575 100 Plus
chrX 22417052 chrX 20407233..20407451 406..624 1080 99.5 Plus
chrX 22417052 chrX 20469532..20469698 606..440 340 80.2 Minus
chrX 22417052 chrX 9180178..9180379 420..621 335 77.7 Plus
chrX 22417052 chrX 20560564..20560774 517..727 320 76.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:23:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20540881..20541272 17..408 1960 100 Plus
X 23542271 X 20553569..20553883 623..937 1575 100 Plus
X 23542271 X 20541827..20542045 406..624 1095 100 Plus
X 23542271 X 9288368..9288569 420..621 335 77.7 Plus
X 23542271 X 20604115..20604281 606..440 325 79.6 Minus
X 23542271 X 20695181..20695391 517..727 320 76.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20525973..20526364 17..408 1960 100 Plus
X 23527363 X 20538661..20538975 623..937 1575 100 Plus
X 23527363 X 20526919..20527137 406..624 1095 100 Plus
X 23527363 X 20589207..20589373 606..440 325 79.6 Minus
X 23527363 X 9296549..9296667 503..621 265 81.5 Plus
X 23527363 X 20680273..20680398 517..642 225 78.5 Plus
2R 25260384 2R 13004698..13004772 177..251 195 84 Plus
X 23527363 X 20680424..20680483 668..727 165 85 Plus
X 23527363 X 20583762..20583805 714..671 145 88.6 Minus
Blast to na_te.dros performed on 2019-03-16 12:08:45 has no hits.

FI12301.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:09:50 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20406563..20406675 294..406 100 -> Plus
chrX 20407234..20407450 407..623 99 -> Plus
chrX 20418992..20419307 624..943 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:13:00 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
CG42267-RB 1..921 17..937 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:51:35 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RB 1..921 17..937 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:35:47 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RC 1..814 17..831 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:13 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RC 1..814 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:13:00 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
CG42267-RB 12..937 9..937 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:51:35 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RB 12..937 9..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:35:47 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RC 107..925 9..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:13 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
RunxB-RC 275..1093 9..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:50 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
X 20540876..20541270 9..406 98 -> Plus
X 20541828..20542044 407..623 100 -> Plus
X 20553570..20553885 624..943 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:50 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
X 20540876..20541270 9..406 98 -> Plus
X 20541828..20542044 407..623 100 -> Plus
X 20553570..20553885 624..943 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:50 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
X 20540876..20541270 9..406 98 -> Plus
X 20541828..20542044 407..623 100 -> Plus
X 20553570..20553885 624..943 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:35:47 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20424597..20424912 624..943 98   Plus
arm_X 20411903..20412297 9..406 98 -> Plus
arm_X 20412855..20413071 407..623 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:27:40 Download gff for FI12301.complete
Subject Subject Range Query Range Percent Splice Strand
X 20525968..20526362 9..406 98 -> Plus
X 20526920..20527136 407..623 100 -> Plus
X 20538662..20538977 624..943 98   Plus

FI12301.pep Sequence

Translation from 1 to 936

> FI12301.pep
KLSVDMHISAEVSSTTSNQIQQQQQQHQQQQQHQLLQHQQQQTATTTTTK
RRNAESSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPV
DTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTL
PIAFKVLALGEVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLR
FVGRSGRGKSFTLTIVISTNPIQIATYTKAIKVTVDGPREPRSKVRHQGF
HPFAFGPQRFGPDPLMAGLPFKLPGKRKRWRRFRGNQGFGRLKRKHRRHT
ERNSGYSISLK*

FI12301.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15967-PA 684 GF15967-PA 1..285 6..275 994 83.9 Plus
Dana\GF15983-PA 666 GF15983-PA 88..255 106..274 654 70.8 Plus
Dana\GF15970-PA 552 GF15970-PA 115..258 119..262 570 70.1 Plus
Dana\GF21771-PA 832 GF21771-PA 267..426 112..273 568 67.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19691-PA 671 GG19691-PA 1..282 6..275 1035 85.9 Plus
Dere\GG17578-PA 757 GG17578-PA 189..356 106..274 653 70.8 Plus
Dere\run-PA 514 GG19696-PA 112..255 119..262 572 70.1 Plus
Dere\GG18309-PA 837 GG18309-PA 290..446 112..270 551 66.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17737-PA 268 GH17737-PA 88..267 96..275 985 99.4 Plus
Dgri\GH17774-PA 232 GH17774-PA 89..227 106..244 605 77.7 Plus
Dgri\GH17740-PA 563 GH17740-PA 116..265 119..268 572 68.7 Plus
Dgri\GH11831-PA 344 GH11831-PA 92..183 112..203 343 68.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
RunxB-PC 663 CG42267-PC 1..270 6..275 1422 100 Plus
RunxA-PB 646 CG34145-PB 4..245 47..274 737 61.4 Plus
RunxA-PC 651 CG34145-PC 4..250 47..274 724 60.3 Plus
RunxA-PD 663 CG34145-PD 4..250 47..274 724 60.3 Plus
run-PC 510 CG1849-PC 38..253 39..262 582 50.9 Plus
run-PA 510 CG1849-PA 38..253 39..262 582 50.9 Plus
lz-PA 826 CG1689-PA 213..428 43..270 580 52.8 Plus
lz-PB 705 CG1689-PB 213..404 43..244 574 55.9 Plus
run-PB 507 CG1849-PB 38..250 39..262 568 50.7 Plus
vvl-PC 713 CG10037-PC 450..539 12..98 204 47.8 Plus
vvl-PE 726 CG10037-PE 450..539 12..98 204 47.8 Plus
vvl-PF 742 CG10037-PF 450..539 12..98 204 47.8 Plus
spri-PM 1789 CG34414-PM 47..116 10..93 167 42.9 Plus
spri-PL 1789 CG34414-PL 47..116 10..93 167 42.9 Plus
spri-PA 1789 CG34414-PA 47..116 10..93 167 42.9 Plus
spri-PO 2043 CG34414-PO 47..116 10..93 167 42.9 Plus
Lmx1a-PC 639 CG32105-PC 70..156 13..97 165 42.5 Plus
Lmx1a-PB 640 CG32105-PB 70..156 13..97 165 42.5 Plus
CG42674-PF 1412 CG42674-PF 3..127 9..141 165 29.3 Plus
CG42674-PE 1412 CG42674-PE 3..127 9..141 165 29.3 Plus
mam-PD 1594 CG8118-PD 197..317 21..119 160 36.6 Plus
mam-PB 1594 CG8118-PB 197..317 21..119 160 36.6 Plus
mam-PA 1594 CG8118-PA 197..317 21..119 160 36.6 Plus
wisp-PB 1372 CG15737-PB 121..223 13..99 159 35.9 Plus
wisp-PC 1373 CG15737-PC 121..223 13..99 159 35.9 Plus
wisp-PA 1373 CG15737-PA 121..223 13..99 159 35.9 Plus
Pdp1-PC 570 CG17888-PC 155..259 4..121 156 35.8 Plus
Pdp1-PL 581 CG17888-PL 155..259 4..121 156 35.8 Plus
ct-PD 2165 CG11387-PD 115..225 5..94 156 34.8 Plus
ct-PE 2174 CG11387-PE 303..413 5..94 156 34.8 Plus
ct-PA 2175 CG11387-PA 303..413 5..94 156 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15119-PA 513 GI15119-PA 85..252 106..274 649 70.8 Plus
Dmoj\GI15484-PA 199 GI15484-PA 1..195 6..209 600 73.9 Plus
Dmoj\GI15491-PA 578 GI15491-PA 119..268 119..268 574 68.7 Plus
Dmoj\GI14398-PA 752 GI14398-PA 176..332 112..270 551 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15800-PA 290 GL15800-PA 88..268 96..276 994 100 Plus
Dper\GL15927-PA 635 GL15927-PA 67..234 106..274 653 70.8 Plus
Dper\GL15806-PA 561 GL15806-PA 122..271 119..268 570 68.7 Plus
Dper\GL16499-PA 867 GL16499-PA 257..416 112..273 568 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13742-PA 301 GA13742-PA 1..283 6..276 1018 83.2 Plus
Dpse\GA25684-PA 569 GA25684-PA 1..168 106..274 653 70.8 Plus
Dpse\run-PA 558 GA14956-PA 120..269 119..268 571 68.7 Plus
Dpse\GA22609-PA 868 GA22609-PA 266..425 112..273 567 67.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23044-PA 293 GM23044-PA 1..291 6..308 1036 80.1 Plus
Dsec\GM22662-PA 535 GM22662-PA 359..497 106..244 608 77.7 Plus
Dsec\GM23050-PA 510 GM23050-PA 110..253 119..262 572 70.1 Plus
Dsec\GM22478-PA 816 GM22478-PA 269..425 112..270 553 66.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17495-PA 657 GD17495-PA 1..269 6..275 1373 97.8 Plus
Dsim\run-PA 510 GD17500-PA 110..253 119..262 573 70.1 Plus
Dsim\GD16951-PA 331 GD16951-PA 74..214 128..270 505 68.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19245-PA 307 GJ19245-PA 1..276 6..275 998 80.9 Plus
Dvir\GJ18917-PA 531 GJ18917-PA 81..248 106..274 656 70.8 Plus
Dvir\run-PA 542 GJ19252-PA 103..252 119..268 573 68.7 Plus
Dvir\GJ18742-PA 655 GJ18742-PA 98..254 112..270 547 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19810-PA 259 GK19810-PA 1..258 6..275 1007 81.3 Plus
Dwil\GK20052-PA 277 GK20052-PA 86..224 106..244 606 77.7 Plus
Dwil\GK19815-PA 510 GK19815-PA 138..281 119..262 572 70.1 Plus
Dwil\GK25373-PA 689 GK25373-PA 125..279 112..273 559 66.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17890-PA 699 GE17890-PA 1..275 6..275 1037 86 Plus
Dyak\GE15340-PA 378 GE15340-PA 203..370 106..274 642 70.8 Plus
Dyak\run-PA 520 GE17894-PA 117..260 119..262 573 70.1 Plus
Dyak\GE17788-PA 832 GE17788-PA 274..430 112..270 550 66.9 Plus

FI12301.hyp Sequence

Translation from 10 to 936

> FI12301.hyp
IMHISAEVSSTTSNQIQQQQQQHQQQQQHQLLQHQQQQTATTTTTKRRNA
ESSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDTSP
YLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAF
KVLALGEVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGR
SGRGKSFTLTIVISTNPIQIATYTKAIKVTVDGPREPRSKVRHQGFHPFA
FGPQRFGPDPLMAGLPFKLPGKRKRWRRFRGNQGFGRLKRKHRRHTERNS
GYSISLK*

FI12301.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
RunxB-PC 663 CG42267-PC 1..270 2..271 1422 100 Plus
RunxA-PB 646 CG34145-PB 4..245 43..270 737 61.4 Plus
RunxA-PC 651 CG34145-PC 4..250 43..270 724 60.3 Plus
RunxA-PD 663 CG34145-PD 4..250 43..270 724 60.3 Plus
run-PC 510 CG1849-PC 38..253 35..258 582 50.9 Plus