Clone FI16653 Report

Search the DGRC for FI16653

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:166
Well:53
Vector:pOT2
Associated Gene/TranscriptSrp72-RA
Protein status:FI16653.pep: gold
Sequenced Size:2138

Clone Sequence Records

FI16653.complete Sequence

2138 bp assembled on 2011-12-20

GenBank Submission: BT132973.1

> FI16653.complete
TAAAAACTTGCATGTTAAACGGAAAGTCGAAAGTTTAAGTCAGTGAATAA
AATATATATTACCACCCACTAACGTGCTGAGCAAACAGGATGTCAAAGGA
CGCTAATCCCAAGGAGGCGCTCATAAAGGCGGCTTACGCTGATGTGAATA
AGTTCGGCAATAACCAGGAGTTTGACAAGGCTGTCAAGGCAGTGAATCGC
ATCCTAGGCGTAGCGCCCGACGATCCCACCGCCCTGCACTGCAAGGTAGT
CTGCCTGGTGCAGCTTTCCAAGTTCGAGGAGGCCTACAAGTTTATTGAGA
AAAATCGACTGTCCTCGCTTTTCTTTGAGAAGGCCTACTGCGAGTACCAA
CTTAACAAGCAGCAGCAAGCGCTTAAGACCATAGACGATGCGGGTCTGCA
GCCCCTGCCTCCGAACCTTAAGGAGCTCCGAACCCAGGTCCTGTACCGCT
TGGAGCGCTACGATGAGTGCCTAGACTCCTATCGCGACATCATTAAGAAC
ACCAGTGACGAGTACGAGGAAGAGCGTCGGACCAATCTCAGCGCCGTGGC
CGCCAACTTGGCTGTGGATCAGACCAAGGAGGTGCCCGAGGTGCCGGAAG
ACACCTACGAGCAGTACTTCAACAGCGCGTGCATCCAGGCTAATCGGCAG
AAGTATGCTGAAGCCGAGCGCAAGTTGCGCACCAGCGAGAAGCTCTGTCT
TGAGGATGAGTGTGCCTCCGAGGAGGAGATCATTGAAGAGGTAGACGTCA
TTCGCGTCCAACTGGCCTATGTCCTCCAACTGCAGGGCAAGACCAAGGAG
GCGTCCAGCATCTACGCGGACTGCCTGCGTCATAAGCCAAAGGACGCAGC
CCTGGTGGCCGTGGCAAGCAACAACTTGGTGGTGGTCAATAAGGACCAGA
ACGTCTTCGATTCCAAGAAGAAGATACGCGCTGCCCTAGCCGACGCCTGT
GAGTCTAGGCTCACCTCGCGCCAGAAGCAGGTCATAGCCCTCAACAACTG
TCTGCTAGCACTTTACACTAATGCCGGCGACCAAGTGCAACAGCTTAGCC
AAAAGCTAGCTCAGACCTACCCGCAGGTGGAATTCGAGGCGCTGCTCATT
CGCTGCACCCAGCTGGCCAAAGATCGCAAGCACAAGGAGGCCATCGAGCA
GCTACAAAAGTTCGCTGCAGCCCACAAGTCGCACGAATTCGTCAGCAAAT
TTGCCATCATACAACTTCAGCTGCTTCAGGGCAACCGCAAGGATGCAATT
GAAACACTGCTGTCATTGGGCGAAGCCAAGTACAAGCCTGGCGTTGTCTC
CGCTCTAGTATCCCTTTATCTAGGCACGGACAACAAGACAGCAGCCTCTG
CGCTGCTGAAGTCCGCCGTCGACTGGTACAAGAAGAACGAGGTGAGCAGT
GGTGATCTGTCGGACATGTGGCGACAGGCAGCCGAGTTCCATTTGCGTGG
TGGCGCGTCCGAGACGGCCGCTAGCTCCCTGGAGGAACTACTTAAGCTGA
ACCCCAACGACACCAAGGTCTTGGCCCAGTTGGTCATCGCCTACGCCCAG
TTTCAGCCCAAGAGGGCTCTTGAGTTAAGCAGAAAGCTGCCCAAACTGGA
AACGTTGACCACTGCTTCCGAAATCGACGCCCTAGAGGCGGCCAACTGGG
TGATGTCAGCTAAGGCGGCCAAGAAGACTGCCAATACCAAGGTCGAACCC
TCGCCGAGCACACCGCTAGAGAAAAAGAAGAACAGGAACCGTAAACGAAA
GGGCAAGCTCCCCAAGAACTACAACGCCGAAGTGGCTCCTGATCCAGAGC
GCTGGCTGCCCAAGTACGAGCGCACAGGCTTCCGAAAGAAGCGAGGTGGC
GCTCGCGGCAAAGATGTCATTAAGGGCTCCCAGGGCATGGCCTCAGGAGC
AGCCGATCAATACGACATGTCCAGCCGCGTGAATCTGACCAAGAACTCCC
CCGCCACACCCGTTTACCAGGAAACAGCTCCAGGTCCAAGGCAGCAGCAC
CGCAAAGGTGGCCACAAAAAGAAGAAGGGCGGTCGCTTCTAAACTGACAC
AGATCACATGCCTTTATACTTTCGAACGCTGATTATAAAAACCGCTTTTG
CATTTTACCTTATTGTACAAGTGTAAAAAAAAAAAAAA

FI16653.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16412912..16413940 202..1230 5145 100 Plus
chr3R 27901430 chr3R 16413994..16414684 1222..1912 3440 99.9 Plus
chr3R 27901430 chr3R 16414743..16414954 1913..2124 1060 100 Plus
chr3R 27901430 chr3R 16412650..16412850 1..201 1005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20588998..20590026 202..1230 5145 100 Plus
3R 32079331 3R 20590080..20590770 1222..1912 3440 99.9 Plus
3R 32079331 3R 20590829..20591043 1913..2127 1075 100 Plus
3R 32079331 3R 20588736..20588936 1..201 1005 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:13:37 has no hits.

FI16653.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:14:40 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16412650..16412850 1..201 100 -> Plus
chr3R 16412912..16413939 202..1229 100 -> Plus
chr3R 16414002..16414684 1230..1912 100 -> Plus
chr3R 16414743..16414954 1913..2124 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-20 17:03:07 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 1..1953 90..2042 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:27 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 1..1953 90..2042 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:55:20 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 1..1953 90..2042 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-20 17:03:06 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 22..2145 1..2124 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:27 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 26..2149 1..2124 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:20 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 26..2149 1..2124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:40 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20588736..20588936 1..201 100 -> Plus
3R 20588998..20590025 202..1229 100 -> Plus
3R 20590088..20590770 1230..1912 100 -> Plus
3R 20590829..20591040 1913..2124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:40 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20588736..20588936 1..201 100 -> Plus
3R 20588998..20590025 202..1229 100 -> Plus
3R 20590088..20590770 1230..1912 100 -> Plus
3R 20590829..20591040 1913..2124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:40 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20588736..20588936 1..201 100 -> Plus
3R 20588998..20590025 202..1229 100 -> Plus
3R 20590088..20590770 1230..1912 100 -> Plus
3R 20590829..20591040 1913..2124 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:27 Download gff for FI16653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16414458..16414658 1..201 100 -> Plus
arm_3R 16414720..16415747 202..1229 100 -> Plus
arm_3R 16415810..16416492 1230..1912 100 -> Plus
arm_3R 16416551..16416762 1913..2124 100   Plus

FI16653.pep Sequence

Translation from 89 to 2041

> FI16653.pep
MSKDANPKEALIKAAYADVNKFGNNQEFDKAVKAVNRILGVAPDDPTALH
CKVVCLVQLSKFEEAYKFIEKNRLSSLFFEKAYCEYQLNKQQQALKTIDD
AGLQPLPPNLKELRTQVLYRLERYDECLDSYRDIIKNTSDEYEEERRTNL
SAVAANLAVDQTKEVPEVPEDTYEQYFNSACIQANRQKYAEAERKLRTSE
KLCLEDECASEEEIIEEVDVIRVQLAYVLQLQGKTKEASSIYADCLRHKP
KDAALVAVASNNLVVVNKDQNVFDSKKKIRAALADACESRLTSRQKQVIA
LNNCLLALYTNAGDQVQQLSQKLAQTYPQVEFEALLIRCTQLAKDRKHKE
AIEQLQKFAAAHKSHEFVSKFAIIQLQLLQGNRKDAIETLLSLGEAKYKP
GVVSALVSLYLGTDNKTAASALLKSAVDWYKKNEVSSGDLSDMWRQAAEF
HLRGGASETAASSLEELLKLNPNDTKVLAQLVIAYAQFQPKRALELSRKL
PKLETLTTASEIDALEAANWVMSAKAAKKTANTKVEPSPSTPLEKKKNRN
RKRKGKLPKNYNAEVAPDPERWLPKYERTGFRKKRGGARGKDVIKGSQGM
ASGAADQYDMSSRVNLTKNSPATPVYQETAPGPRQQHRKGGHKKKKGGRF
*

FI16653.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16682-PA 653 GF16682-PA 1..639 1..636 3011 92 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23989-PA 653 GG23989-PA 1..639 1..636 3099 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17177-PA 656 GH17177-PA 1..642 1..636 2838 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Srp72-PA 650 CG5434-PA 1..650 1..650 3301 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10583-PA 655 GI10583-PA 1..641 1..636 2854 86.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13566-PA 654 GL13566-PA 1..640 1..636 3025 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18879-PA 654 GA18879-PA 1..640 1..636 3022 89.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23121-PA 650 GM23121-PA 1..650 1..650 3400 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19360-PA 650 GD19360-PA 1..650 1..650 3398 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22940-PA 655 GJ22940-PA 1..641 1..636 2913 87.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22456-PA 654 GK22456-PA 1..640 1..636 2860 86.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25672-PA 653 GE25672-PA 1..639 1..636 3091 95.3 Plus

FI16653.hyp Sequence

Translation from 89 to 2041

> FI16653.hyp
MSKDANPKEALIKAAYADVNKFGNNQEFDKAVKAVNRILGVAPDDPTALH
CKVVCLVQLSKFEEAYKFIEKNRLSSLFFEKAYCEYQLNKQQQALKTIDD
AGLQPLPPNLKELRTQVLYRLERYDECLDSYRDIIKNTSDEYEEERRTNL
SAVAANLAVDQTKEVPEVPEDTYEQYFNSACIQANRQKYAEAERKLRTSE
KLCLEDECASEEEIIEEVDVIRVQLAYVLQLQGKTKEASSIYADCLRHKP
KDAALVAVASNNLVVVNKDQNVFDSKKKIRAALADACESRLTSRQKQVIA
LNNCLLALYTNAGDQVQQLSQKLAQTYPQVEFEALLIRCTQLAKDRKHKE
AIEQLQKFAAAHKSHEFVSKFAIIQLQLLQGNRKDAIETLLSLGEAKYKP
GVVSALVSLYLGTDNKTAASALLKSAVDWYKKNEVSSGDLSDMWRQAAEF
HLRGGASETAASSLEELLKLNPNDTKVLAQLVIAYAQFQPKRALELSRKL
PKLETLTTASEIDALEAANWVMSAKAAKKTANTKVEPSPSTPLEKKKNRN
RKRKGKLPKNYNAEVAPDPERWLPKYERTGFRKKRGGARGKDVIKGSQGM
ASGAADQYDMSSRVNLTKNSPATPVYQETAPGPRQQHRKGGHKKKKGGRF
*

FI16653.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Srp72-PA 650 CG5434-PA 1..650 1..650 3301 100 Plus