Clone FI16814 Report

Search the DGRC for FI16814

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:168
Well:14
Vector:pOT2
Associated Gene/TranscriptRab9D-RA
Protein status:FI16814.pep: gold
Sequenced Size:915

Clone Sequence Records

FI16814.complete Sequence

915 bp assembled on 2011-11-23

GenBank Submission: BT132791.1

> FI16814.complete
CTGTTATTGAAAAAACAAAAACCCAGAACAAGCCAAGCTAAAATTGTCAC
TTCAGTCGAATCGTTATACATATTAAACCAAACCGAATTAACGATGAGCC
AATACGACAATCCGTTTAAGATTATCCTCCTGGGTGACAGCGGCGTAGGC
AAAACCTGCCTGCTGATGCGTTTCTCGGATAACCAATTCACCACAAGACA
CCGGAGCACTGTGGGCTTGGATAGAAGGGAGTGCAGCGTGGAGTTTGCCG
ATTGGAGGATGGGGAGGATGCTGCAAGTCTGGGACACCTCCGACGACGAG
CGCTTCAAATTGCTGAAGGCGACCCAATGTCGCAGTGCCCATGGCATACT
GCTCGTCTACGACATAACGTCGTCCAAAAGTTTCCAAAACATCGATGGCT
GGATGAAGGAGATACGGCGCCTGTGTCCGGATAAGGTAATTGTCCTGCTG
GTGGGCAACAAAAGTGATGATCCGAACCATCGCCAGGTGAGCATGGCGCA
GGGGTTCAACTATGCCCATCGTCAGTCAATCTGCTTTGAAGAGGTTTCCG
CCAAGAGTGGAAGGAATGTATATGACATATTTAGCTCGTTGGCAATGGAC
ATATATACATATCGTCGTGTACATTACAACCCGTTCAGCTTGACATCTTG
GCAGGAAGAGGAGGACGCTGCAGAGTCACTGGATTAACCAATTAATCGAG
CTGGCGCAGATCGGCAGAAGGCCAATGACACCAATACCAATCATTTGACA
TTATTATCATTAATATAATATTTTAACATTTCTATAATGTCTACAAGCTC
CGTAAACTTCTTGCCTAATGAAAAAATAAACTATTTGTAATGTGAAACGG
GAAATTGGCGAAAAATGTACATCAATAAATTACAACAAAAAATTAAAAAA
AAAAAAAAAAAAAAA

FI16814.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10480455..10481348 1..894 4470 100 Plus
chrX 22417052 chrX 10841477..10842362 894..9 4355 99.4 Minus
chrX 22417052 chrX 10552325..10553210 894..9 4325 99.2 Minus
chrX 22417052 chrX 10513724..10514609 894..9 4280 98.9 Minus
chrX 22417052 chrX 10308889..10309602 10..728 2005 86.4 Plus
chrX 22417052 chrX 10842937..10843800 879..27 1660 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10589089..10589983 1..895 4475 100 Plus
X 23542271 X 10950162..10951048 895..9 4360 99.4 Minus
X 23542271 X 10660957..10661843 895..9 4330 99.2 Minus
X 23542271 X 10622357..10623243 895..9 4285 98.9 Minus
X 23542271 X 10417412..10418125 10..728 2005 86.4 Plus
X 23542271 X 10951623..10952486 879..27 1660 80.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10597187..10598081 1..895 4475 100 Plus
X 23527363 X 10958260..10959146 895..9 4360 99.4 Minus
X 23527363 X 10669055..10669941 895..9 4330 99.2 Minus
X 23527363 X 10630455..10631341 895..9 4285 98.8 Minus
X 23527363 X 10425761..10426223 267..728 1550 89.9 Plus
X 23527363 X 10960036..10960349 581..268 760 82.8 Minus
X 23527363 X 10960361..10960584 250..27 715 87.9 Minus
X 23527363 X 10425510..10425692 10..192 615 89 Plus
X 23527363 X 10959721..10959807 879..793 330 91.9 Minus
X 23527363 X 10959882..10959970 738..650 220 83.1 Minus
X 23527363 X 10959816..10959861 786..741 185 93.4 Minus
Blast to na_te.dros performed 2019-03-15 11:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 5967..6106 876..748 123 60.7 Minus

FI16814.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:35:09 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10480455..10481348 1..894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-23 13:16:43 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..594 94..687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:35 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..594 94..687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:38:28 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..594 94..687 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 13:16:42 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..894 1..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:35 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..894 1..894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:28 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 1..894 1..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:09 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
X 10589089..10589982 1..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:09 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
X 10589089..10589982 1..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:09 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
X 10589089..10589982 1..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:35 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10483122..10484015 1..894 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:40:10 Download gff for FI16814.complete
Subject Subject Range Query Range Percent Splice Strand
X 10597187..10598080 1..894 100   Plus

FI16814.pep Sequence

Translation from 0 to 686

> FI16814.pep
LLLKKQKPRTSQAKIVTSVESLYILNQTELTMSQYDNPFKIILLGDSGVG
KTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFADWRMGRMLQVWDTSDDE
RFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLL
VGNKSDDPNHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMD
IYTYRRVHYNPFSLTSWQEEEDAAESLD*

FI16814.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19340-PA 237 GF19340-PA 1..169 32..202 461 52 Plus
Dana\GF17263-PA 205 GF17263-PA 7..172 34..201 359 43.5 Plus
Dana\GF10843-PA 207 GF10843-PA 5..180 35..210 356 43.3 Plus
Dana\GF20241-PA 204 GF20241-PA 6..170 35..201 345 43.7 Plus
Dana\GF20451-PA 200 GF20451-PA 5..184 35..223 336 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18360-PA 218 GG18360-PA 1..191 32..225 535 56.7 Plus
Dere\GG14761-PA 205 GG14761-PA 7..172 34..201 360 43.5 Plus
Dere\GG13365-PA 207 GG13365-PA 5..180 35..210 356 43.3 Plus
Dere\GG19277-PA 204 GG19277-PA 6..170 35..201 338 43.7 Plus
Dere\GG18010-PA 201 GG18010-PA 5..172 35..205 331 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18937-PA 205 GH18937-PA 7..172 34..201 359 43.5 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..180 35..210 356 43.3 Plus
Dgri\GH24326-PA 201 GH24326-PA 4..172 34..205 346 40.1 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..183 35..211 342 42.8 Plus
Dgri\GH18257-PA 214 GH18257-PA 7..173 34..202 310 36.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-PA 197 CG32678-PA 1..197 32..228 1044 100 Plus
Rab9E-PA 197 CG32673-PA 1..197 32..228 1032 98 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 32..228 1028 98.5 Plus
Rab9Db-PA 197 CG9807-PA 1..197 32..228 1018 97 Plus
RabX2-PA 195 CG2885-PA 1..195 32..228 688 71.7 Plus
Rab9Fb-PA 214 CG32670-PA 1..194 32..228 568 60.4 Plus
Rab1-PA 205 CG3320-PA 7..172 34..201 351 42.9 Plus
Rab8-PC 207 CG8287-PC 5..169 35..201 347 44.3 Plus
Rab8-PA 207 CG8287-PA 5..169 35..201 347 44.3 Plus
Rab35-PB 201 CG9575-PB 5..172 35..205 336 38.6 Plus
Rab35-PD 201 CG9575-PD 5..172 35..205 336 38.6 Plus
Rab35-PA 201 CG9575-PA 5..172 35..205 336 38.6 Plus
Rab10-PA 204 CG17060-PA 6..167 35..198 332 43.9 Plus
Rab11-PA 214 CG5771-PA 7..173 34..202 309 36.7 Plus
Rab11-PB 214 CG5771-PB 7..173 34..202 309 36.7 Plus
Rab19-PB 219 CG7062-PP3-RB 18..184 35..201 306 37.3 Plus
Rab19-PA 219 CG7062-PA 18..184 35..201 306 37.3 Plus
Rab26-PE 410 CG34410-PE 208..375 34..201 306 39.4 Plus
Rab26-PD 410 CG34410-PD 208..375 34..201 306 39.4 Plus
Rab26-PC 410 CG34410-PC 208..375 34..201 306 39.4 Plus
Rab2-PB 213 CG3269-PB 7..168 39..202 299 35.4 Plus
Rab2-PA 213 CG3269-PA 7..168 39..202 299 35.4 Plus
Rab30-PD 223 CG9100-PD 1..167 32..201 297 37.1 Plus
Rab30-PC 223 CG9100-PC 1..167 32..201 297 37.1 Plus
Rab30-PB 223 CG9100-PB 1..167 32..201 297 37.1 Plus
Rab30-PA 223 CG9100-PA 1..167 32..201 297 37.1 Plus
Rab14-PD 215 CG4212-PD 8..173 35..202 295 35.1 Plus
Rab14-PA 215 CG4212-PA 8..173 35..202 295 35.1 Plus
Rab14-PB 239 CG4212-PB 32..197 35..202 295 35.1 Plus
Rab3-PB 220 CG7576-PB 10..178 27..197 293 36.3 Plus
Rab3-PA 220 CG7576-PA 10..178 27..197 293 36.3 Plus
Rab35-PC 190 CG9575-PC 8..161 49..205 288 37.6 Plus
RabX4-PA 213 CG31118-PA 9..174 39..205 281 36.3 Plus
Rab4-PA 213 CG4921-PA 5..162 35..194 278 36.2 Plus
Rab4-PB 213 CG4921-PB 5..162 35..194 278 36.2 Plus
Rab6-PB 208 CG6601-PB 1..170 30..198 276 35.5 Plus
Rab6-PA 208 CG6601-PA 1..170 30..198 276 35.5 Plus
Rab39-PB 218 CG12156-PB 6..176 35..202 274 37.2 Plus
Rab39-PA 218 CG12156-PA 6..176 35..202 274 37.2 Plus
Rab5-PI 219 CG3664-PI 30..187 39..198 271 36.2 Plus
Rab5-PH 219 CG3664-PH 30..187 39..198 271 36.2 Plus
Rab5-PG 219 CG3664-PG 30..187 39..198 271 36.2 Plus
Rab5-PE 219 CG3664-PE 30..187 39..198 271 36.2 Plus
Rab5-PC 219 CG3664-PC 30..187 39..198 271 36.2 Plus
Rab5-PD 219 CG3664-PD 30..187 39..198 271 36.2 Plus
Rab5-PF 219 CG3664-PF 30..187 39..198 271 36.2 Plus
Rab5-PB 219 CG3664-PB 30..187 39..198 271 36.2 Plus
Rab5-PA 219 CG3664-PA 30..187 39..198 271 36.2 Plus
Rab26-PG 388 CG34410-PG 192..353 40..201 271 37.8 Plus
Rab21-PC 222 CG17515-PC 14..171 39..197 268 35.2 Plus
Rab21-PD 222 CG17515-PD 14..171 39..197 268 35.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10837-PA 205 GI10837-PA 7..172 34..201 369 44 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..180 35..210 356 43.3 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..183 35..211 348 43.3 Plus
Dmoj\GI14806-PA 201 GI14806-PA 4..172 34..205 340 39.5 Plus
Dmoj\GI23656-PA 214 GI23656-PA 7..173 34..202 310 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27164-PA 205 GL27164-PA 7..172 34..201 359 43.5 Plus
Dper\GL15675-PA 207 GL15675-PA 5..180 35..210 354 43.3 Plus
Dper\GL14977-PA 211 GL14977-PA 3..164 39..202 341 42.2 Plus
Dper\GL12921-PA 200 GL12921-PA 5..172 35..205 322 38 Plus
Dper\GL22545-PA 219 GL22545-PA 18..184 35..201 315 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17362-PA 205 GA17362-PA 7..172 34..201 359 43.5 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..180 35..210 354 43.3 Plus
Dpse\GA22382-PA 205 GA22382-PA 3..164 39..202 344 42.2 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..183 35..211 340 41.7 Plus
Dpse\GA21885-PA 200 GA21885-PA 5..172 35..205 328 38.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11275-PA 215 GM11275-PA 1..195 32..228 542 58.1 Plus
Dsec\GM11294-PA 206 GM11294-PA 1..169 32..202 464 51.5 Plus
Dsec\GM11425-PA 169 GM11425-PA 1..161 32..194 456 52.8 Plus
Dsec\GM15089-PA 205 GM15089-PA 7..172 34..201 360 43.5 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..180 35..210 356 43.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11278-PA 215 GD11278-PA 1..191 32..225 543 57.7 Plus
Dsim\GD16021-PA 206 GD16021-PA 1..169 32..202 479 53.8 Plus
Dsim\GD16978-PA 207 GD16978-PA 1..169 32..202 478 53.8 Plus
Dsim\GD19996-PA 205 GD19996-PA 7..172 34..201 360 43.5 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..180 35..210 356 43.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14443-PA 205 GJ14443-PA 7..172 34..201 369 44 Plus
Dvir\GJ14874-PA 202 GJ14874-PA 7..168 39..202 359 42.7 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..180 35..210 356 43.3 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..183 35..211 342 42.8 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 4..172 34..205 334 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20101-PA 216 GK20101-PA 10..171 39..202 368 45.7 Plus
Dwil\GK12772-PA 205 GK12772-PA 7..172 34..201 360 43.5 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..180 35..210 356 43.3 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..183 35..211 343 42.8 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..172 35..205 334 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17848-PA 219 GE17848-PA 1..191 32..225 524 55.2 Plus
Dyak\Rab1-PA 205 GE25003-PA 7..172 34..201 360 43.5 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..180 35..210 356 43.3 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..170 35..201 338 43.7 Plus
Dyak\GE17342-PA 201 GE17342-PA 5..172 35..205 331 38.6 Plus

FI16814.hyp Sequence

Translation from 0 to 686

> FI16814.hyp
LLLKKQKPRTSQAKIVTSVESLYILNQTELTMSQYDNPFKIILLGDSGVG
KTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFADWRMGRMLQVWDTSDDE
RFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLL
VGNKSDDPNHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMD
IYTYRRVHYNPFSLTSWQEEEDAAESLD*

FI16814.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-PA 197 CG32678-PA 1..197 32..228 1044 100 Plus
Rab9E-PA 197 CG32673-PA 1..197 32..228 1032 98 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 32..228 1028 98.5 Plus
Rab9Db-PA 197 CG9807-PA 1..197 32..228 1018 97 Plus
RabX2-PA 195 CG2885-PA 1..195 32..228 688 71.7 Plus