Clone FI16820 Report

Search the DGRC for FI16820

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:168
Well:20
Vector:pOT2
Associated Gene/TranscriptPH4alphaNE1-RA
Protein status:FI16820.pep: gold
Sequenced Size:1757

Clone Sequence Records

FI16820.complete Sequence

1757 bp assembled on 2011-12-19

GenBank Submission: BT132956.1

> FI16820.complete
CAAGCCGCGAACATCGCCGGACTTGCAGATCTTCAAGAACGTACCGCATA
TACACAGCAAGGATATTAATTAGAACCCTAAAGGATATATAGTGCAACCA
TACAATGCGTGGACTAGTGTTACTGGTGGGACTGATCTTCTTACTGGCTC
AGGGATCCCTTGCCTCGGATTACTTTTCATCCATTACGGGCCTGGAGGAT
CTCTTGCATACGGAGCAGTATCTTACAAGGGAACTGAGGTCAAAGGTTAA
TGCAATCCAAACTGCACTACAACAGCTCGAGAGCGAGCTATCCTCCATCG
AAAAGGAGCACACCATGGCCGCGTCGGACACGGAGAACTACCTGACCAAC
CCGGTGAATGTGTACCGCCTGATGAAGCGCCTTCACACGGACTGGTCTCT
GATGGAGGGACGAGTGCAGCTTATGGCTGAGGAGATGAATTTCAATGCTA
CCAGGGAGTACGGCCTGAGCTACCCCAGCCAGGAGGACGTGGAGGGGGCT
GCTCTGGCTCTCGTCCGCCTGCAGAGCACCTACAAACTGGACGTGGCCCA
GGTGGCCCAGGGCATTCTGAATGGCGTCAAATACGGCTCCGATATGAGCT
GGCAGGATTGCTTCGAGCTGGGTCAACAACTCTTTGAAATGGAGGACTAC
AACAACACCAAGGTCTGGCTGCGGGAATCGATGGAACGCTTGCGACGTCA
GACCAGCCACGCCCCCAGCCACCTAGCGCCCACTAGCGGACCGGATACGG
TTACCCTCAACAAAATGGAGGCGACGGCCAAGAGTTTGTTCCAATTGGGC
GATTTCGACACTGCTTTCGAGCTGAGCCAGCGAGTCCTTCAGTTCGATCC
CAAACGCATAAGGAACTGGCATCTCGGTGACAAGGGAACGGCGCCTCCGG
AGGACATCGATGATGTGTATCTACCAAAGCACTCGGACTCCTACAGCCTA
TCGCAGGAGTTCGCCAAATACGAAAAGGTGTGCCGAGGAGAGGTGCATCC
AATTGTCCGCCAGGAGTTGCGGTGTCGCTATAGCCGGGGAAACCATCCGT
ATCGCTTTCTGGCGCCACTGAAGCTGGAGGAGCACAGCCTGGATCCCTAT
GTGGCAACCTTCCATGATATACTGAGTCCCGGAAAGATCTCGCAGCTCCG
GGAAATGGCTGTTCCGCGCATGCATCGCTCCACAGTGAATCCCCTGCCCG
GCGGACAGCTCAAAAAGTCCGCTTTTCGGGTGAGCAAAAATGCGTGGCTG
GCGTACGAGTCCCATCCCACAATGGTGGGCATGCTCCGTGACCTGAAGGA
CGCCACCGGGCTGGATACCACCTTCTGCGAGCAGCTCCAAGTGGCCAACT
ACGGTGTGGGTGGGCACTACGAGCCGCACTGGGATTTCTTCCGGGACCCC
AATCATTATCCGGCGGAGGAGGGCAACCGCATTGCCACTGCCATATTTTA
TCTATCCGAGGTGGAGCAGGGTGGGGCCACCGCCTTTCCCTTCCTGGACA
TCGCCGTGAAGCCGCAGCTGGGCAACGTTCTCTTCTGGTACAACCTACAC
CGCTCCCTGGACAAGGACTACCGCACCAAGCACGCCGGTTGTCCAGTGCT
CAAGGGCAGCAAGTGGATTGGCAACGTTTGGATACACGAGGTGACCCAGA
CCTTCGCCCGACCCTGCGACGTTTTCCGGGATCACGAGGTGTCGCTGGAG
TACGAGATAATCAAATAAAGATCGTGATAGTCAGGTTAAAAAAAAAAAAA
AAAAAAA

FI16820.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26319818..26320321 1451..948 2400 98.4 Minus
chr3R 27901430 chr3R 26322548..26322830 283..1 1385 99.3 Minus
chr3R 27901430 chr3R 26320599..26320812 799..586 1055 99.5 Minus
chr3R 27901430 chr3R 26319585..26319750 1617..1452 755 97 Minus
chr3R 27901430 chr3R 26320378..26320527 947..798 735 99.3 Minus
chr3R 27901430 chr3R 26321535..26321691 438..282 725 97.5 Minus
chr3R 27901430 chr3R 26321329..26321476 586..439 710 98.6 Minus
chr3R 27901430 chr3R 26319256..26319375 1737..1618 600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30497313..30497816 1451..948 2520 100 Minus
3R 32079331 3R 30500044..30500326 283..1 1415 100 Minus
3R 32079331 3R 30498094..30498307 799..586 1070 100 Minus
3R 32079331 3R 30497084..30497249 1617..1452 830 100 Minus
3R 32079331 3R 30499036..30499192 438..282 785 100 Minus
3R 32079331 3R 30497873..30498022 947..798 750 100 Minus
3R 32079331 3R 30498830..30498977 586..439 740 100 Minus
3R 32079331 3R 30496749..30496870 1739..1618 610 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:10:40 has no hits.

FI16820.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:36 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26319256..26319375 1618..1737 100 <- Minus
chr3R 26320600..26320811 587..798 99 <- Minus
chr3R 26321329..26321476 439..586 98 <- Minus
chr3R 26321535..26321689 284..438 97 <- Minus
chr3R 26322548..26322830 1..283 99   Minus
chr3R 26319585..26319750 1452..1617 96 <- Minus
chr3R 26319818..26320321 948..1451 98 <- Minus
chr3R 26320378..26320526 799..947 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-19 14:47:04 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1614 105..1718 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:54:33 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1614 105..1718 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:53:24 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1614 105..1718 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 14:47:04 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1633 105..1737 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:54:33 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1737 1..1737 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:24 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE1-RA 1..1737 1..1737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:36 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30500044..30500326 1..283 100   Minus
3R 30496751..30496870 1618..1737 100 <- Minus
3R 30497084..30497249 1452..1617 100 <- Minus
3R 30497313..30497816 948..1451 100 <- Minus
3R 30497873..30498021 799..947 100 <- Minus
3R 30498095..30498306 587..798 100 <- Minus
3R 30498830..30498977 439..586 100 <- Minus
3R 30499036..30499190 284..438 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:36 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30500044..30500326 1..283 100   Minus
3R 30496751..30496870 1618..1737 100 <- Minus
3R 30497084..30497249 1452..1617 100 <- Minus
3R 30497313..30497816 948..1451 100 <- Minus
3R 30497873..30498021 799..947 100 <- Minus
3R 30498095..30498306 587..798 100 <- Minus
3R 30498830..30498977 439..586 100 <- Minus
3R 30499036..30499190 284..438 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:36 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30500044..30500326 1..283 100   Minus
3R 30496751..30496870 1618..1737 100 <- Minus
3R 30497084..30497249 1452..1617 100 <- Minus
3R 30497313..30497816 948..1451 100 <- Minus
3R 30497873..30498021 799..947 100 <- Minus
3R 30498095..30498306 587..798 100 <- Minus
3R 30498830..30498977 439..586 100 <- Minus
3R 30499036..30499190 284..438 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:54:33 Download gff for FI16820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26322473..26322592 1618..1737 100 <- Minus
arm_3R 26322806..26322971 1452..1617 100 <- Minus
arm_3R 26323035..26323538 948..1451 100 <- Minus
arm_3R 26323595..26323743 799..947 100 <- Minus
arm_3R 26323817..26324028 587..798 100 <- Minus
arm_3R 26324552..26324699 439..586 100 <- Minus
arm_3R 26324758..26324912 284..438 100 <- Minus
arm_3R 26325766..26326048 1..283 100   Minus

FI16820.hyp Sequence

Translation from 104 to 1717

> FI16820.hyp
MRGLVLLVGLIFLLAQGSLASDYFSSITGLEDLLHTEQYLTRELRSKVNA
IQTALQQLESELSSIEKEHTMAASDTENYLTNPVNVYRLMKRLHTDWSLM
EGRVQLMAEEMNFNATREYGLSYPSQEDVEGAALALVRLQSTYKLDVAQV
AQGILNGVKYGSDMSWQDCFELGQQLFEMEDYNNTKVWLRESMERLRRQT
SHAPSHLAPTSGPDTVTLNKMEATAKSLFQLGDFDTAFELSQRVLQFDPK
RIRNWHLGDKGTAPPEDIDDVYLPKHSDSYSLSQEFAKYEKVCRGEVHPI
VRQELRCRYSRGNHPYRFLAPLKLEEHSLDPYVATFHDILSPGKISQLRE
MAVPRMHRSTVNPLPGGQLKKSAFRVSKNAWLAYESHPTMVGMLRDLKDA
TGLDTTFCEQLQVANYGVGGHYEPHWDFFRDPNHYPAEEGNRIATAIFYL
SEVEQGGATAFPFLDIAVKPQLGNVLFWYNLHRSLDKDYRTKHAGCPVLK
GSKWIGNVWIHEVTQTFARPCDVFRDHEVSLEYEIIK*

FI16820.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE1-PA 537 CG9728-PA 1..537 1..537 2839 100 Plus
PH4alphaMP-PA 535 CG9726-PA 1..531 4..533 1093 44.1 Plus
PH4alphaEFB-PA 550 CG31022-PA 7..545 4..527 947 38.5 Plus
PH4alphaSG1-PA 540 CG31014-PA 7..530 10..526 802 35.4 Plus
PH4alphaPV-PA 525 CG31015-PA 10..520 1..521 763 33.7 Plus

FI16820.pep Sequence

Translation from 104 to 1717

> FI16820.pep
MRGLVLLVGLIFLLAQGSLASDYFSSITGLEDLLHTEQYLTRELRSKVNA
IQTALQQLESELSSIEKEHTMAASDTENYLTNPVNVYRLMKRLHTDWSLM
EGRVQLMAEEMNFNATREYGLSYPSQEDVEGAALALVRLQSTYKLDVAQV
AQGILNGVKYGSDMSWQDCFELGQQLFEMEDYNNTKVWLRESMERLRRQT
SHAPSHLAPTSGPDTVTLNKMEATAKSLFQLGDFDTAFELSQRVLQFDPK
RIRNWHLGDKGTAPPEDIDDVYLPKHSDSYSLSQEFAKYEKVCRGEVHPI
VRQELRCRYSRGNHPYRFLAPLKLEEHSLDPYVATFHDILSPGKISQLRE
MAVPRMHRSTVNPLPGGQLKKSAFRVSKNAWLAYESHPTMVGMLRDLKDA
TGLDTTFCEQLQVANYGVGGHYEPHWDFFRDPNHYPAEEGNRIATAIFYL
SEVEQGGATAFPFLDIAVKPQLGNVLFWYNLHRSLDKDYRTKHAGCPVLK
GSKWIGNVWIHEVTQTFARPCDVFRDHEVSLEYEIIK*

FI16820.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23330-PA 537 GF23330-PA 3..537 4..537 2421 83.4 Plus
Dana\GF23331-PA 535 GF23331-PA 8..531 10..533 1116 44.5 Plus
Dana\GF22904-PA 547 GF22904-PA 7..542 7..527 955 38.4 Plus
Dana\GF23328-PA 542 GF23328-PA 9..540 4..534 836 35.6 Plus
Dana\GF23317-PA 520 GF23317-PA 9..517 3..521 713 32.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11931-PA 537 GG11931-PA 1..537 1..537 2699 92.4 Plus
Dere\GG11932-PA 535 GG11932-PA 16..531 18..533 1123 46.1 Plus
Dere\GG11753-PA 550 GG11753-PA 24..545 22..527 952 38.6 Plus
Dere\GG11929-PA 538 GG11929-PA 6..528 10..526 768 33.8 Plus
Dere\GG11918-PA 525 GG11918-PA 34..520 25..521 751 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17427-PA 538 GH17427-PA 20..538 20..537 2052 72.6 Plus
Dgri\GH17428-PA 540 GH17428-PA 9..540 5..537 1180 44.7 Plus
Dgri\GH14110-PA 487 GH14110-PA 1..482 62..527 922 40.2 Plus
Dgri\GH12979-PA 517 GH12979-PA 11..511 5..521 710 34.2 Plus
Dgri\GH12977-PA 517 GH12977-PA 11..511 5..521 692 34.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE1-PA 537 CG9728-PA 1..537 1..537 2839 100 Plus
PH4alphaMP-PA 535 CG9726-PA 1..531 4..533 1093 44.1 Plus
PH4alphaEFB-PA 550 CG31022-PA 7..545 4..527 947 38.5 Plus
PH4alphaSG1-PA 540 CG31014-PA 7..530 10..526 802 35.4 Plus
PH4alphaPV-PA 525 CG31015-PA 10..520 1..521 763 33.7 Plus
PH4alphaSG2-PA 527 CG1546-PA 7..525 6..533 753 35.3 Plus
CG31013-PA 534 CG31013-PA 9..523 4..521 665 32.9 Plus
CG9698-PA 547 CG9698-PA 8..531 10..526 608 29.2 Plus
CG31016-PC 536 CG31016-PC 4..518 5..520 602 30.3 Plus
CG31016-PB 536 CG31016-PB 4..518 5..520 602 30.3 Plus
CG32201-PB 520 CG32201-PB 33..518 23..521 560 29.8 Plus
PH4alphaNE2-PA 542 CG9720-PA 6..524 5..521 554 28.1 Plus
CG31524-PA 536 CG31524-PA 6..518 5..521 548 29.7 Plus
CG18233-PB 515 CG18233-PB 31..508 23..521 544 27.1 Plus
CG31524-PB 535 CG31524-PB 6..517 5..521 544 29.8 Plus
CG15539-PC 508 CG15539-PC 26..504 19..521 539 29.4 Plus
CG15539-PB 509 CG15539-PB 26..505 19..521 538 29.3 Plus
CG32199-PB 509 CG32199-PB 3..507 23..521 509 28.1 Plus
CG15864-PB 490 CG15864-PB 9..478 4..521 505 27.8 Plus
PH4alphaNE3-PA 481 CG31017-PA 26..479 32..512 500 28.2 Plus
CG34345-PA 504 CG34345-PA 37..502 23..521 490 27.2 Plus
CG15539-PA 386 CG15539-PA 2..382 124..521 481 31.3 Plus
CG18234-PC 515 CG18234-PC 27..513 26..536 453 24.8 Plus
CG11828-PD 458 CG11828-PD 2..456 25..521 441 28.7 Plus
CG18749-PC 491 CG18749-PC 273..479 303..521 403 38.6 Plus
CG18749-PB 491 CG18749-PB 273..479 303..521 403 38.6 Plus
CG31371-PC 485 CG31371-PC 7..483 5..506 376 25.9 Plus
CG31371-PB 507 CG31371-PB 7..475 5..501 371 25.7 Plus
CG18231-PB 470 CG18231-PB 17..445 24..503 357 24.3 Plus
CG4174-PF 473 CG4174-PF 47..469 48..507 292 24 Plus
CG4174-PE 473 CG4174-PE 47..469 48..507 292 24 Plus
CG4174-PD 473 CG4174-PD 47..469 48..507 292 24 Plus
CG34041-PE 549 CG34041-PE 238..549 5..338 173 20.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22756-PA 533 GI22756-PA 5..533 8..537 2055 71.6 Plus
Dmoj\GI22757-PA 535 GI22757-PA 2..534 1..534 1127 44.5 Plus
Dmoj\GI24860-PA 487 GI24860-PA 1..482 62..527 936 41.6 Plus
Dmoj\GI10637-PA 529 GI10637-PA 38..522 25..521 687 32.9 Plus
Dmoj\GI24862-PA 549 GI24862-PA 12..537 9..531 664 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14042-PA 534 GL14042-PA 20..534 20..537 2290 81.4 Plus
Dper\GL14044-PA 536 GL14044-PA 21..533 21..534 1095 44.5 Plus
Dper\GL13463-PA 487 GL13463-PA 1..481 62..526 903 39.5 Plus
Dper\GL14040-PA 549 GL14040-PA 18..547 17..534 840 37.5 Plus
Dper\GL13464-PA 533 GL13464-PA 20..531 13..533 752 35.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21991-PA 534 GA21991-PA 20..534 20..537 2297 81.6 Plus
Dpse\GA21989-PA 536 GA21989-PA 21..533 21..534 1097 44.5 Plus
Dpse\GA15946-PA 549 GA15946-PA 19..543 18..526 946 37.9 Plus
Dpse\GA15938-PA 549 GA15938-PA 3..547 2..534 841 36.8 Plus
Dpse\GA13747-PA 533 GA13747-PA 20..531 13..533 756 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12151-PA 537 GM12151-PA 1..537 1..537 2819 96.8 Plus
Dsec\GM12152-PA 535 GM12152-PA 8..531 10..533 1108 45.1 Plus
Dsec\GM12882-PA 550 GM12882-PA 26..545 24..527 932 38.4 Plus
Dsec\GM12149-PA 537 GM12149-PA 10..527 13..526 790 35.3 Plus
Dsec\GM12139-PA 525 GM12139-PA 34..520 25..521 758 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17024-PA 537 GD17024-PA 1..537 1..537 2857 98 Plus
Dsim\GD17035-PA 535 GD17035-PA 16..531 18..533 1117 45.3 Plus
Dsim\GD21521-PA 550 GD21521-PA 26..545 24..527 933 38.4 Plus
Dsim\GD16902-PA 525 GD16902-PA 34..520 25..521 770 34.4 Plus
Dsim\GD21523-PA 527 GD21523-PA 6..525 5..533 748 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22757-PA 534 GJ22757-PA 21..534 20..537 2081 73.7 Plus
Dvir\GJ22759-PA 539 GJ22759-PA 9..539 11..537 1142 44.6 Plus
Dvir\GJ24502-PA 487 GJ24502-PA 1..482 62..527 923 40.9 Plus
Dvir\GJ22993-PA 525 GJ22993-PA 14..521 5..521 740 34 Plus
Dvir\GJ22994-PA 496 GJ22994-PA 1..491 14..521 699 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13124-PA 536 GK13124-PA 4..536 5..537 2216 76.9 Plus
Dwil\GK13125-PA 539 GK13125-PA 11..536 10..534 1125 44.5 Plus
Dwil\GK14136-PA 550 GK14136-PA 26..545 24..527 941 38.3 Plus
Dwil\GK13123-PA 540 GK13123-PA 1..535 4..536 795 36.1 Plus
Dwil\GK14137-PA 536 GK14137-PA 26..534 17..533 699 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23382-PA 537 GE23382-PA 1..537 1..537 2743 93.7 Plus
Dyak\GE23383-PA 535 GE23383-PA 1..531 5..533 1114 44.4 Plus
Dyak\GE10881-PA 487 GE10881-PA 1..482 62..527 899 39.5 Plus
Dyak\GE23380-PA 540 GE23380-PA 10..530 13..526 803 35.9 Plus
Dyak\GE23368-PA 528 GE23368-PA 32..523 23..521 737 33.2 Plus