Clone FI16876 Report

Search the DGRC for FI16876

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:168
Well:76
Vector:pOT2
Associated Gene/Transcriptyellow-g-RA
Protein status:FI16876.pep: gold
Sequenced Size:1371

Clone Sequence Records

FI16876.complete Sequence

1371 bp assembled on 2013-02-04

GenBank Submission: BT150079.1

> FI16876.complete
AGTTTTATGTTCTGGCCAACGTGGTGAATCGAGTGCAGAAGCTCTGTTTG
TGGAAAGCGCAGAAAGAAACGCCGAAAAATGTCGCAGCTGCAACTGCTGC
TCCTCGTCGCTTCGGCCTCCGTGGTCCTCGCGGGATACAGCTCCTCCACC
GACGAGTCGACGGACGCCTCCAACTCCATTGGCGGCACCAAGTGCGACAA
GAACCCGCTGAACGAACTGACCTTCCAGCTCAGCGGCAGCAGCCTCCACT
GGCCCTGCGAGTCCACCAAGAACATCTACGTCCAGTCCGGCCGCTATGTG
CCCCGTAACGTGATCGTGACCCGGGCCCAACTGCAGCGGGACTCCGCCTT
CGTGGCGCTGCCCAGGTACAAGCAGGGCGTGCCCTTCACTCTCGGCAAGG
TCAATCTAAAGAAGGGCGAGTGCCTGACCAAGATCGCACCCTATCCCTGC
TGGGCCATTCAGGAGGAGGGCAACTGCCAGGCGCTGCAGTCCGTCGTGGA
CATAGCCGTCGATCAGAATGGACTTCTGTGGGCCTTGGACGTGGGCATTG
TCAACACCCTGGAGCAGCCCATCCGCAGATGCAGTCCCAAGATCGTGGCC
ATAAACACGGCCAACCACAAGGTGGTCAAGAGCATCGACCTCAGCGACCT
GGTCACCTCCGAGAGTCGGCTGCAGTTCATCGTGGTCGACTACTCCAAGG
ACAACAAGCCATTCGTCTATGTGGCCGATGCTGGAGCACGTAGTATCCTG
GTATACGACATCACCGGCAACAAGTCCTACCGCATCGTCCTGCCGAAGGC
CACCGCCCCCACCAGCGATGTGCTGTACGTGGCGCTCACCTCGAAGCCGG
ACGGCACCTCCACCCTGTTCTTCAGCTACCTGAGCTCCCCCCGTCTGTAC
TCCATCAAGGGCGAGTACCTGCGCGTTGGCCAGGGAGCGGGCTCCATCAT
CGACGTGGGCCCCAAGCCCTATGGCAAACAGGCGGTGCTGCTGGGCGCCG
ACGGCGGCACCTCGCTCTTCTTCCGCTACAAGGGCGAGAACGACATTTAC
CTGTGGGACTCGGAGACCTGCTTCAAGGCCGCCAATCTGCAGGAGGTGCA
GCGGGGAGGCGACTGCCGGCTGTCCACCCAAGTGCTCCCGGGTCACAAGC
GATTCATGTGGGCGCTGGAGAGCAACTTCCACGATTTCATCTCGGATCGC
ACGGGCTGCAACGGAGCCTCGATCGTCCTGCATCCTGTGGTGCGGGAATG
TGACGATTGAGTCCGTATCCCTCCACTTTCTTAGGCTTAAGATTCAAACT
GATTTGTTGTCGTTACTGGGTCTCATTAAAATTTTGGTGAATATAAGAAA
AAAAAAAAAAAAAAAAAAAAA

FI16876.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2269287..2269914 1344..717 3065 99.2 Minus
chr3L 24539361 chr3L 2271682..2272201 520..1 2555 99.4 Minus
chr3L 24539361 chr3L 2270349..2270545 716..520 985 100 Minus
chr3L 24539361 chr3L 2276364..2276489 439..564 210 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2269881..2270508 1344..717 3140 100 Minus
3L 28110227 3L 2272250..2272769 520..1 2600 100 Minus
3L 28110227 3L 2270943..2271139 716..520 985 100 Minus
3L 28110227 3L 2276928..2277053 439..564 210 77.8 Plus
Blast to na_te.dros performed on 2019-03-15 14:13:53 has no hits.

FI16876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:14:49 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2269281..2269914 717..1347 98 <- Minus
chr3L 2270349..2270545 520..716 100 <- Minus
chr3L 2271683..2272201 1..519 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-04-26 11:08:16 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1182 79..1260 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:24:55 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1182 79..1260 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:55:38 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1182 79..1260 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-26 11:08:16 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1344 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:24:55 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1344 1..1344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:55:38 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-g-RA 1..1344 1..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:49 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2269875..2270508 717..1347 99 <- Minus
3L 2270943..2271139 520..716 100 <- Minus
3L 2272251..2272769 1..519 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:49 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2269875..2270508 717..1347 99 <- Minus
3L 2270943..2271139 520..716 100 <- Minus
3L 2272251..2272769 1..519 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:49 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2269875..2270508 717..1347 99 <- Minus
3L 2270943..2271139 520..716 100 <- Minus
3L 2272251..2272769 1..519 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:55 Download gff for FI16876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2269875..2270508 717..1347 99 <- Minus
arm_3L 2270943..2271139 520..716 100 <- Minus
arm_3L 2272251..2272769 1..519 100   Minus

FI16876.hyp Sequence

Translation from 78 to 1259

> FI16876.hyp
MSQLQLLLLVASASVVLAGYSSSTDESTDASNSIGGTKCDKNPLNELTFQ
LSGSSLHWPCESTKNIYVQSGRYVPRNVIVTRAQLQRDSAFVALPRYKQG
VPFTLGKVNLKKGECLTKIAPYPCWAIQEEGNCQALQSVVDIAVDQNGLL
WALDVGIVNTLEQPIRRCSPKIVAINTANHKVVKSIDLSDLVTSESRLQF
IVVDYSKDNKPFVYVADAGARSILVYDITGNKSYRIVLPKATAPTSDVLY
VALTSKPDGTSTLFFSYLSSPRLYSIKGEYLRVGQGAGSIIDVGPKPYGK
QAVLLGADGGTSLFFRYKGENDIYLWDSETCFKAANLQEVQRGGDCRLST
QVLPGHKRFMWALESNFHDFISDRTGCNGASIVLHPVVRECDD*

FI16876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-g-PA 393 CG5717-PA 1..393 1..393 2040 100 Plus
yellow-g2-PA 382 CG13804-PA 40..369 50..377 880 48.8 Plus
yellow-e-PA 530 CG9792-PA 50..371 73..370 227 28.5 Plus
yellow-h-PA 463 CG1629-PA 76..374 68..337 223 25.8 Plus
yellow-e2-PB 435 CG17044-PB 43..244 47..236 198 26.2 Plus

FI16876.pep Sequence

Translation from 78 to 1259

> FI16876.pep
MSQLQLLLLVASASVVLAGYSSSTDESTDASNSIGGTKCDKNPLNELTFQ
LSGSSLHWPCESTKNIYVQSGRYVPRNVIVTRAQLQRDSAFVALPRYKQG
VPFTLGKVNLKKGECLTKIAPYPCWAIQEEGNCQALQSVVDIAVDQNGLL
WALDVGIVNTLEQPIRRCSPKIVAINTANHKVVKSIDLSDLVTSESRLQF
IVVDYSKDNKPFVYVADAGARSILVYDITGNKSYRIVLPKATAPTSDVLY
VALTSKPDGTSTLFFSYLSSPRLYSIKGEYLRVGQGAGSIIDVGPKPYGK
QAVLLGADGGTSLFFRYKGENDIYLWDSETCFKAANLQEVQRGGDCRLST
QVLPGHKRFMWALESNFHDFISDRTGCNGASIVLHPVVRECDD*

FI16876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24870-PA 394 GF24870-PA 33..394 32..393 1909 97.5 Plus
Dana\GF24911-PA 387 GF24911-PA 44..374 49..377 907 48.6 Plus
Dana\GF17380-PA 524 GF17380-PA 50..372 73..371 209 27.8 Plus
Dana\GF19909-PA 404 GF19909-PA 13..213 48..236 208 27.7 Plus
Dana\GF11858-PA 411 GF11858-PA 22..230 46..247 204 28 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14522-PA 393 GG14522-PA 1..393 1..393 2061 98.5 Plus
Dere\GG14855-PA 382 GG14855-PA 39..369 49..377 901 48.6 Plus
Dere\GG17050-PA 530 GG17050-PA 50..372 73..371 233 28.2 Plus
Dere\GG16380-PA 459 GG16380-PA 72..370 68..337 231 25.4 Plus
Dere\GG17051-PA 440 GG17051-PA 49..249 48..236 211 26.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15007-PA 395 GH15007-PA 40..395 38..393 1864 96.3 Plus
Dgri\GH16473-PA 386 GH16473-PA 43..381 49..385 900 47.8 Plus
Dgri\GH21216-PA 431 GH21216-PA 40..248 46..247 215 29 Plus
Dgri\GH11563-PA 464 GH11563-PA 32..378 46..374 212 25.1 Plus
Dgri\GH18542-PA 554 GH18542-PA 53..375 73..371 211 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-g-PA 393 CG5717-PA 1..393 1..393 2040 100 Plus
yellow-g2-PA 382 CG13804-PA 40..369 50..377 880 48.8 Plus
yellow-e-PA 530 CG9792-PA 50..371 73..370 227 28.5 Plus
yellow-h-PA 463 CG1629-PA 76..374 68..337 223 25.8 Plus
yellow-e2-PB 435 CG17044-PB 43..244 47..236 198 26.2 Plus
y-PA 541 CG3757-PA 38..284 58..282 186 24.9 Plus
yellow-b-PB 453 CG17914-PB 30..377 46..373 185 23.9 Plus
yellow-b-PA 453 CG17914-PA 30..377 46..373 185 23.9 Plus
yellow-d2-PA 412 CG9891-PA 23..221 46..236 184 27.1 Plus
yellow-e3-PA 409 CG17045-PA 24..213 55..236 160 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13169-PA 396 GI13169-PA 15..396 14..393 1818 93.2 Plus
Dmoj\GI12146-PA 387 GI12146-PA 35..382 40..385 906 46.6 Plus
Dmoj\GI23241-PA 533 GI23241-PA 51..373 73..371 225 27.6 Plus
Dmoj\GI17054-PA 454 GI17054-PA 31..377 46..374 213 26.2 Plus
Dmoj\GI20502-PA 429 GI20502-PA 38..246 46..247 209 28.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24619-PA 407 GL24619-PA 46..407 32..393 1892 96.7 Plus
Dper\GL24646-PA 375 GL24646-PA 44..364 49..379 833 45.5 Plus
Dper\GL23986-PA 429 GL23986-PA 46..360 58..338 221 25.9 Plus
Dper\GL23985-PA 533 GL23985-PA 49..371 73..371 219 27 Plus
Dper\GL18156-PA 466 GL18156-PA 66..376 56..337 211 24.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19080-PA 407 GA19080-PA 46..407 32..393 1892 96.7 Plus
Dpse\GA12541-PA 387 GA12541-PA 44..376 49..379 903 48.7 Plus
Dpse\GA14291-PB 426 GA14291-PB 43..233 58..236 221 27.2 Plus
Dpse\GA22039-PA 533 GA22039-PA 49..371 73..371 218 27 Plus
Dpse\GA27858-PA 427 GA27858-PA 27..337 56..337 213 24.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14127-PA 393 GM14127-PA 1..393 1..393 2073 98.7 Plus
Dsec\GM14481-PA 382 GM14481-PA 39..369 49..377 903 48.6 Plus
Dsec\GM25935-PA 530 GM25935-PA 50..372 73..371 234 28.4 Plus
Dsec\GM25936-PA 426 GM25936-PA 32..235 45..236 224 26.9 Plus
Dsec\GM16008-PA 412 GM16008-PA 23..231 46..247 200 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13396-PA 393 GD13396-PA 1..393 1..393 2077 99 Plus
Dsim\GD13677-PA 382 GD13677-PA 39..369 49..377 902 48.6 Plus
Dsim\GD20497-PA 530 GD20497-PA 50..372 73..371 233 28.4 Plus
Dsim\GD20498-PA 426 GD20498-PA 34..235 47..236 215 26.7 Plus
Dsim\GD11759-PA 412 GD11759-PA 23..231 46..247 199 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11945-PA 395 GJ11945-PA 33..395 31..393 1844 96.4 Plus
Dvir\GJ13424-PA 387 GJ13424-PA 45..382 50..385 899 47.6 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 40..365 43..337 220 25.8 Plus
Dvir\GJ22352-PA 430 GJ22352-PA 39..289 46..270 210 28.9 Plus
Dvir\GJ10736-PA 531 GJ10736-PA 53..375 73..371 206 26.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12518-PA 399 GK12518-PA 18..399 14..393 1902 93.5 Plus
Dwil\GK12633-PA 384 GK12633-PA 7..371 15..377 894 45 Plus
Dwil\GK13342-PA 538 GK13342-PA 52..374 73..371 223 27.6 Plus
Dwil\GK13672-PA 468 GK13672-PA 53..251 43..236 207 27.6 Plus
Dwil\GK25268-PA 545 GK25268-PA 42..288 58..282 203 26.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21714-PA 393 GE21714-PA 1..393 1..393 2061 98.5 Plus
Dyak\GE20312-PA 382 GE20312-PA 2..369 3..377 901 45.1 Plus
Dyak\GE24438-PA 530 GE24438-PA 50..379 73..378 230 27.8 Plus
Dyak\GE14541-PA 463 GE14541-PA 76..377 68..340 210 24.2 Plus
Dyak\GE24439-PA 440 GE24439-PA 48..249 47..236 208 26.2 Plus