Clone FI17309 Report

Search the DGRC for FI17309

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:173
Well:9
Vector:pFlc-1
Associated Gene/TranscriptSep4-RG
Protein status:FI17309.pep: gold
Sequenced Size:2442

Clone Sequence Records

FI17309.complete Sequence

2442 bp assembled on 2011-12-19

GenBank Submission: BT132948.1

> FI17309.complete
AGTTGCAGCTCCACCACAATACAATAAAGTGTTCATCAAACTCGGGGATT
TATTTTTTCAACGACCAAACAACAAACAACTACTGACTCTCACTACGAAC
GAATATCAAACCAAAAATAATCAACGCTTAAACAAGCAAACAAATCCAAC
TATGTGGCAAATTTGCTGATAAGCAGGAAAATAAAGTGAAAACCCGGAAG
GCAGAAAAAGTGGCGAAGGCTTGGGCCAATTACGTTTTAAGTAGGCGTTC
CGTATACACACGAAAGTCGGCGGGAAAGGGCGGCACAGGCGGCAGGAGGC
GGAGGGAGTTACAAGGACCAAAGGACCAGGACACACACCAGCAGCAGAAA
CATGTCTAAAACGCCGTCGTTCGACAAGGATCGCGATTACATAGGCTTTG
CCACGCTTCCAGAGCAAGTGCACCGGAAGTCGGTGAAGCGGGGCTTCGAG
TTCACCCTCATGGTGGTCGGCGAGTCCGGACTGGGCAAGTCCACGCTGAT
CAACAGTCTCTTTCTGGGCGATCTCTACAAGAACCGGCAGATGCCCAATG
TGGAGGAGCGCATCGAGAAGACGACGAAGGTGGAGAAGAAGACGATGGAC
ATCGAGGAGCGGGGCGTCCGGCTCCGGCTGACGGTGGTGGACACCCCGGG
ATTCGGGGATGCCATCAACTGTGAGGACAGCTGGCGCGTCTGCACCCAGT
ACATCGACGAGCAGTTCCGCCAGTACTTCACCGACGAGAGCGGCCTGAAT
CGCCGCAACATCCAGGACAATCGGGTGCACTGCTGCCTCTACTTCGTGCC
GCCATGGGGCCACAGCCTGCGACAGATGGACCTCGATTTGATACGGCGGC
TGCACCGCAAGGTGAACATCGTGCTGGTGATCGGCAAGGCCGATTGCCTC
AACAAGCAGGAGGTGCGCAAGCTGAAGGAGCGCATCCTGCAGGACCTGGA
GGACAACCACATCCAGCTGTATCAGTTCCCCGAATGCGACTCCGACGAGG
ACGACGACTTCAAGCAGCAGGACCGCGAACTGAAGGCCTCCATTCCGTTC
GCCGTCGTCGGCAGCAACACCATTCTGGAGGTGGCCGGCAAGAAGGTCCG
AGGGCGCCAGTATCCGTGGGGCGTGGTAAACGTGGAGGATCCGGAGCACA
GCGACTTCATCAAGCTGCGCACCTTCTTGATATCCACGCACATGCAGGAC
CTCAAGGACACCACGCAGGACGTGCACTACGAGAACTTCCGGGCGCAGTG
CATCTCGCAGATTTCGCAGCACGCGCTGCGTGAGCGCGGCAAGTTGAAGC
GGGACTCGATTAGCTCGACCAATGGATTCGACGCGGCCATCTCGGAGACG
GACAGGCTGCTCCTGCAAAAGGACGAGGAGATAAGGAGGATGCAGGACAT
GCTCACCCAGATGCAGGAGAAGCTCAAGCAGACCCATCTCATGGAGATGA
AGAAGAATGACAGCGTGATCGACGTCTAGGGAACGGAAATGGGAACGTGT
TCAATTTTGCACCGCCATATATGCATCTACCTACTATATAGGACTTATAT
GGTGACCCAGAGAAATCCTGGAGCAGCTGCAACCAAATCGACTTTGTTTA
TAAGCTAGCACAGACTTTTTAAAAACAAAAACAAAGACACCCAATTAAAT
TCAAACAAAAACAAAACTGATTAAGACAACGACTCTCCCCCCCCAAAAAG
CACAAAGAATCCGACGAACCAAAAACTTCAGACATCACACAGCCTTTTTC
AATTTTGTAGCTAAAGTAACGATTTCGTTAAGAACTAACGATTAAATAGA
ACACGTCTATCTCGAGACATTAGATATTGATCAACACGATAACGATATTA
TACCAAAGTTTAGGGAGTTTCAAAAACTTAACGCAAGTAAATTGTTAATG
GAAAAGATCAAGAAACCACAGAGGCACATAGAAGTACCGATAACGATAAA
CGGAAAGACATAGACAGATCCCAAAAATGTTTTAATTTATTGTACAAGTA
TAATTTTGATATATTTGATTTCCTTTTGTTTTGGTTTTAAAGAGCAAAAC
TTGAGAATAGGTGAGTTATAAGCAAGTTTGCTTTATTTATGTGTAAAGAA
CTTATACCATTTATATTGTAAGAATATATCAGATCGGATGATATAGGACA
AACCGCTGGAGGTTTTGGCACTGAATTTCCATGAATCGACTTTCAGCAAG
TTCCAATTATTTATGCTAATTACGTATTATCAGATATATGTATCTATGAA
CAAAACCTATTTTGTTGAAACGAATTGTTAATGAATTTATTTTAAATTAA
TCGATTAAGCCTTCACGCAACAACCATAATATTTAAATGAAATTATAGTC
GAAAAATTATATATAAACATAGCGATTGCTAAAAATCGATTTCAAATAAA
GATAAAAACAATTTAAAAAAAAAAATAAAAAAAAAAAAAAAA

FI17309.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16573893..16574697 2417..1613 4025 100 Minus
chrX 22417052 chrX 16575967..16576426 815..356 2270 99.6 Minus
chrX 22417052 chrX 16575164..16575570 1219..813 1990 99.3 Minus
chrX 22417052 chrX 16574692..16575071 1595..1216 1885 99.7 Minus
chrX 22417052 chrX 16576813..16577171 359..1 1765 99.4 Minus
chrX 22417052 chrX 21224724..21224833 418..527 340 87.3 Plus
chrX 22417052 chrX 21225347..21225670 849..1172 270 72.2 Plus
chrX 22417052 chrX 21224963..21225038 591..666 200 84.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16684213..16685414 2417..1216 6010 100 Minus
X 23542271 X 16686310..16686769 815..356 2300 100 Minus
X 23542271 X 16685507..16685913 1219..813 2035 100 Minus
X 23542271 X 16687156..16687514 359..1 1780 99.7 Minus
X 23542271 X 21359566..21359675 418..527 340 87.3 Plus
X 23542271 X 21360189..21360512 849..1172 270 72.2 Plus
X 23542271 X 21359805..21359880 591..666 200 84.2 Plus
2R 25286936 2R 8239094..8239270 1065..1241 195 74 Plus
Blast to na_te.dros performed 2019-03-15 12:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7129..7171 317..358 140 83.7 Plus
TART-C 11124 TART-C TARTC 11124bp 8582..8624 317..358 140 83.7 Plus
invader4 3105 invader4 INVADER4 3105bp 1303..1459 2342..2172 120 57.3 Minus

FI17309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16573909..16575068 1219..2401 97 <- Minus
chrX 16575165..16575567 816..1218 99 <- Minus
chrX 16575967..16576426 356..815 99 <- Minus
chrX 16576817..16577171 1..355 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-19 14:47:02 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 1..1128 352..1479 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:54:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 1..1128 352..1479 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:53:03 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 1..1128 352..1479 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 14:47:02 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:54:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 20..2420 1..2401 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:03 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
Sep4-RG 20..2420 1..2401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 16687160..16687514 1..355 100   Minus
X 16684229..16685411 1219..2401 100 <- Minus
X 16685508..16685910 816..1218 100 <- Minus
X 16686310..16686769 356..815 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 16687160..16687514 1..355 100   Minus
X 16684229..16685411 1219..2401 100 <- Minus
X 16685508..16685910 816..1218 100 <- Minus
X 16686310..16686769 356..815 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 16687160..16687514 1..355 100   Minus
X 16684229..16685411 1219..2401 100 <- Minus
X 16685508..16685910 816..1218 100 <- Minus
X 16686310..16686769 356..815 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:54:26 Download gff for FI17309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16578262..16579444 1219..2401 100 <- Minus
arm_X 16579541..16579943 816..1218 100 <- Minus
arm_X 16580343..16580802 356..815 100 <- Minus
arm_X 16581193..16581547 1..355 100   Minus

FI17309.hyp Sequence

Translation from 351 to 1478

> FI17309.hyp
MSKTPSFDKDRDYIGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLI
NSLFLGDLYKNRQMPNVEERIEKTTKVEKKTMDIEERGVRLRLTVVDTPG
FGDAINCEDSWRVCTQYIDEQFRQYFTDESGLNRRNIQDNRVHCCLYFVP
PWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKERILQDLE
DNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVR
GRQYPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQC
ISQISQHALRERGKLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDM
LTQMQEKLKQTHLMEMKKNDSVIDV*

FI17309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sep4-PG 375 CG9699-PG 1..375 1..375 1957 100 Plus
Sep4-PC 427 CG9699-PC 55..427 3..375 1948 100 Plus
Sep4-PE 427 CG9699-PE 55..427 3..375 1948 100 Plus
Sep4-PD 427 CG9699-PD 55..427 3..375 1948 100 Plus
Sep4-PB 427 CG9699-PB 55..427 3..375 1948 100 Plus

FI17309.pep Sequence

Translation from 351 to 1478

> FI17309.pep
MSKTPSFDKDRDYIGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLI
NSLFLGDLYKNRQMPNVEERIEKTTKVEKKTMDIEERGVRLRLTVVDTPG
FGDAINCEDSWRVCTQYIDEQFRQYFTDESGLNRRNIQDNRVHCCLYFVP
PWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKERILQDLE
DNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVR
GRQYPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQC
ISQISQHALRERGKLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDM
LTQMQEKLKQTHLMEMKKNDSVIDV*

FI17309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22296-PA 375 GF22296-PA 1..375 1..375 2004 99.5 Plus
Dana\GF20920-PA 364 GF20920-PA 15..353 13..351 1109 59.9 Plus
Dana\GF12347-PA 545 GF12347-PA 128..464 13..368 840 46.1 Plus
Dana\GF18330-PA 419 GF18330-PA 19..346 9..347 667 39.3 Plus
Dana\GF11226-PA 419 GF11226-PA 26..349 13..347 666 39.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18234-PA 430 GG18234-PA 58..430 3..375 2000 99.7 Plus
Dere\GG19725-PA 361 GG19725-PA 15..350 13..351 1091 59.7 Plus
Dere\GG23345-PA 541 GG23345-PA 124..460 13..368 842 46.1 Plus
Dere\GG10692-PA 422 GG10692-PA 14..349 1..347 684 39.6 Plus
Dere\GG15324-PA 419 GG15324-PA 19..346 9..347 666 39.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24231-PA 440 GH24231-PA 68..440 3..375 1992 98.9 Plus
Dgri\GH24812-PA 362 GH24812-PA 15..359 13..359 1140 58.9 Plus
Dgri\GH21082-PA 541 GH21082-PA 124..460 13..368 848 46.1 Plus
Dgri\GH16156-PA 419 GH16156-PA 19..346 9..347 661 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sep4-PG 375 CG9699-PG 1..375 1..375 1957 100 Plus
Sep4-PC 427 CG9699-PC 55..427 3..375 1948 100 Plus
Sep4-PE 427 CG9699-PE 55..427 3..375 1948 100 Plus
Sep4-PD 427 CG9699-PD 55..427 3..375 1948 100 Plus
Sep4-PB 427 CG9699-PB 55..427 3..375 1948 100 Plus
Sep4-PF 427 CG9699-PF 55..427 3..375 1948 100 Plus
Sep4-PA 427 CG9699-PA 55..427 3..375 1948 100 Plus
Sep1-PA 361 CG1403-PA 15..358 13..359 1096 59.5 Plus
pnut-PA 539 CG8705-PA 122..458 13..368 811 46.1 Plus
pnut-PB 539 CG8705-PB 122..458 13..368 811 46.1 Plus
Sep5-PB 422 CG2916-PB 15..362 2..359 672 39.4 Plus
Sep5-PA 422 CG2916-PA 15..362 2..359 672 39.4 Plus
Sep2-PA 419 CG4173-PA 19..382 9..368 655 37.7 Plus
Sep2-PB 360 CG4173-PB 20..323 74..368 546 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10938-PA 294 GI10938-PA 1..294 82..375 1560 99 Plus
Dmoj\GI21539-PA 364 GI21539-PA 15..361 13..359 1140 59.3 Plus
Dmoj\GI18682-PA 541 GI18682-PA 124..460 13..368 853 46.3 Plus
Dmoj\GI22174-PA 419 GI22174-PA 19..346 9..347 665 39 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19764-PA 369 GL19764-PA 37..369 27..375 1717 93.7 Plus
Dper\GL16012-PA 363 GL16012-PA 15..363 13..362 1130 57.1 Plus
Dper\GL11211-PA 534 GL11211-PA 117..453 13..368 850 46.3 Plus
Dper\GL10608-PA 421 GL10608-PA 22..345 13..347 676 39.5 Plus
Dper\GL13925-PA 419 GL13925-PA 19..346 9..347 668 39.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21972-PA 432 GA21972-PA 60..432 3..375 1989 99.5 Plus
Dpse\GA12712-PA 363 GA12712-PA 15..363 13..362 1130 57.1 Plus
Dpse\GA21269-PA 534 GA21269-PA 117..453 13..368 850 46.3 Plus
Dpse\GA15516-PA 421 GA15516-PA 22..345 13..347 675 39.5 Plus
Dpse\GA18006-PA 419 GA18006-PA 19..346 9..347 668 39.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13376-PA 217 GM13376-PA 1..217 159..375 1139 100 Plus
Dsec\GM23080-PA 361 GM23080-PA 15..350 13..351 1104 59.7 Plus
Dsec\GM21017-PA 539 GM21017-PA 122..458 13..368 842 46.1 Plus
Dsec\GM20740-PA 422 GM20740-PA 15..349 2..347 690 39.7 Plus
Dsec\GM23178-PA 419 GM23178-PA 19..346 9..347 665 39.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15733-PA 375 GD15733-PA 1..375 1..375 2008 100 Plus
Dsim\GD10550-PA 528 GD10550-PA 111..447 13..368 840 46.1 Plus
Dsim\GD10205-PA 422 GD10205-PA 15..382 2..365 690 38.3 Plus
Dsim\GD20051-PA 419 GD20051-PA 19..346 9..347 666 39.3 Plus
Dsim\GD17531-PA 164 GD17531-PA 1..153 196..351 425 54.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15264-PA 440 GJ15264-PA 75..440 3..375 1913 96.8 Plus
Dvir\GJ16012-PA 364 GJ16012-PA 15..361 13..359 1130 58.4 Plus
Dvir\GJ21698-PA 538 GJ21698-PA 121..411 13..304 852 52.4 Plus
Dvir\GJ24294-PA 419 GJ24294-PA 19..346 9..347 661 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10092-PA 431 GK10092-PA 59..431 3..375 1995 99.5 Plus
Dwil\GK25618-PA 364 GK25618-PA 15..361 13..359 1124 57.8 Plus
Dwil\GK15820-PA 546 GK15820-PA 129..465 13..368 838 45.8 Plus
Dwil\GK22714-PA 419 GK22714-PA 19..346 9..347 667 39 Plus
Dwil\GK15728-PA 422 GK15728-PA 23..346 13..347 657 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15652-PA 430 GE15652-PA 58..430 3..375 2000 100 Plus
Dyak\GE17923-PA 361 GE17923-PA 15..350 13..351 1091 59.7 Plus
Dyak\GE19185-PA 541 GE19185-PA 124..460 13..368 842 46.1 Plus
Dyak\GE23454-PA 422 GE23454-PA 14..349 1..347 685 40.2 Plus
Dyak\Sep2-PA 419 GE25056-PA 19..346 9..347 665 39.3 Plus