Clone FI17310 Report

Search the DGRC for FI17310

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:173
Well:10
Vector:pFlc-1
Associated Gene/TranscriptSppL-RA
Protein status:FI17310.pep: gold
Sequenced Size:2178

Clone Sequence Records

FI17310.complete Sequence

2178 bp assembled on 2011-12-14

GenBank Submission: BT132917.1

> FI17310.complete
AGTCGTACTGAAAATTTCTCAAGCGCTGCAAGCCAGTCTTTGCCAAATTT
GGATTGAAGCGGTGCAGCTGACATAAGAACGCGATAAATCCAGCGCAGGA
CGACCGATAAGCGAAGAAGCCAGCCGACTGGCGACTACAAGTGATATCTG
AAACTATATCTGCGATATAGATTGAAGTCGCATCCGGAGGAACCGGAGCG
AGCATGTCGCACGGTGGAGCCGGTGGCGGTCTGGGAGCTCAAACTGTTGG
AGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCTGGCGGTGGAGAATACC
GCGAACTCCACTGGACGGTCTCAAGCGTAATGGACTCGTCTCGGGTCTCT
ACCTGCCTCATATCGATGCTGCTGATAGTCTACGGCAGCTTTCGCTCCTT
AAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAGAAGAAGCGAAATGAAT
CGATGACCAATCTTCTTACCGGCGAGCCCGTCGAGAAGGAACCAACGGAT
AAATTCGCCACTCTGGACACGATGCATGCCCTCTGTTTGCCCCTCGGAGC
TTCCATCTCACTGCTCATCATGTTCTTCTTCTTCGACTCGATGCAGCTGC
TCTTCGCCGTCTGCACAGCGATTATAGCCACCGTGGCGCTGGCCTTTCTG
CTGCTGCCCATGTGCCAGTACATCATCAGGCCATGCACAGATGGAAAGCG
ATTCTCCTTCGGATTCTGCGGTCGCTTCACAGCCGCGGAGCTCTTCAGCT
TTACGCTTTCGGTATCGATTGTGTGCATATGGGTGCTCACTGGCCACTGG
CTGCTAATGGATGCAATGGGCATGGGCCTGTGTGTGGCATTCATAGCGTT
TGTGCGTCTGCCCAGCTTGAAGGTGTCCACGCTGCTGTTGACCGGCCTGC
TCATCTACGACGTCTTCTGGGTATTCCTCTCCTCGTACATCTTCAGCACC
AACGTGATGGTCAAGGTGGCGACGCGACCCGCCGATAATCCCGTGGGCAT
CGTGGCCAGAAAGTTGCATCTGGGTGGCATTGTGCGGGACACACCAAAGC
TGAATCTGCCCGGAAAGCTTGTTTTTCCCAGCCTGCACAATACCGGTCAC
TTCTCTATGCTGGGCCTGGGTGATGTGGTGATGCCGGGCCTGTTGCTGTG
CTTCGTCTTGCGGTATGATGCGTACAAGAAGGCGCAGGGCGTCACATCGG
ATCCCACATTGTCACCACCCAGAGGAGTTGGCTCCCGGTTGACATACTTT
CATTGTTCCTTATTGGGTTATTTCTTGGGCCTGCTAACGGCGACGGTCAG
CTCCGAGGTCTTTAAGGCGGCCCAGCCGGCGCTGCTGTATCTAGTGCCCT
TTACGTTATTGCCGCTCTTGCTGATGGCGTATCTGAAGGGCGACCTGCGG
CGCATGTGGAGCGAGCCGTTTATCGCGCAACAACCATCAAAACAACTGGA
AGTCTGAGTGTACTCTATCTAAAAGCAAAGAAAAACAAAAAACCAACAGC
ATACAATGTGAAGAACACACACACATAAGATCTAATACTAACGTTTGTCT
CTTAAATAACGTATTGAGTATGTATTTTTTAACTCAACTTAACTAAGTTT
CGTTTTAAGTTAGGTGATCCTCGTTTTCATAGTGAAATAAAAGCAAAAAC
CGAGTAATTATAGTTTTTAGCCTAAGCGGAAAGGTTTTATATATTCACAT
ATATATATACTTCATACGAGAGTTCATTCAAATTGGCTTTAATGTCTCCA
ATCATGCAGATAACTAGCGAGTAGAACAAAGGTCAAGCGAAATATTAGTT
ACTAACTAATAGGCATTACTAATAACTCTGTAAACCATAGCGAAAAGACT
AGCAAGAAGACAGTTTGAGATTCGAATTTCAATCATACATCATCCACTCG
AAATCTGTTCCGGGCAGTACGTTCTGTAAATACTTAAGTTATGTGTAATA
ATAACAAACCACCATGCAACAAATAATAGTTAGTAAGCTCGCCTTCATAC
ACATTTAATCGAGATCCGTTTCCGTTTCACACGCTCATTTCCGTCCTTCG
ATTTTTTCGTTTTGTCACCCAATGTTTCCCACACATCTTCACAACCATAA
TGATGTTTTGCCAAAATGCATGTGTTCGTTGCAAACAATAAATCAATTAA
TAATGCTAGACGAAAAAAAAAAAAAAAA

FI17310.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21710263..21711038 1387..2162 3850 99.7 Plus
chr3R 27901430 chr3R 21709532..21709986 813..1267 2245 99.6 Plus
chr3R 27901430 chr3R 21708348..21708795 48..495 2210 99.6 Plus
chr3R 27901430 chr3R 21709273..21709464 622..813 960 100 Plus
chr3R 27901430 chr3R 21710077..21710199 1267..1389 600 99.2 Plus
chr3R 27901430 chr3R 21708861..21708986 496..621 570 96.8 Plus
chr3R 27901430 chr3R 21705546..21705592 1..47 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25887296..25888072 1387..2163 3885 100 Plus
3R 32079331 3R 25886565..25887019 813..1267 2275 100 Plus
3R 32079331 3R 25885382..25885829 48..495 2240 100 Plus
3R 32079331 3R 25886307..25886498 622..813 960 100 Plus
3R 32079331 3R 25885895..25886020 496..621 630 100 Plus
3R 32079331 3R 25887110..25887232 1267..1389 615 100 Plus
3R 32079331 3R 25882576..25882622 1..47 235 100 Plus
Blast to na_te.dros performed 2019-03-15 12:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1232..1328 1429..1526 127 60.2 Plus

FI17310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:02:12 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21708861..21708986 496..621 96 -> Plus
chr3R 21709273..21709464 622..813 100 -> Plus
chr3R 21705546..21705592 1..47 100 -> Plus
chr3R 21708348..21708795 48..495 99 -> Plus
chr3R 21709533..21709986 814..1267 99 -> Plus
chr3R 21710078..21710198 1268..1388 99 -> Plus
chr3R 21710265..21711038 1389..2162 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-14 10:09:08 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 1..1254 204..1457 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:52:13 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RA 1..1254 204..1457 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:49:01 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RB 1..1254 204..1457 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:09:08 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 1..1655 1..1655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:52:13 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RC 3..2164 1..2162 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:01 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RC 3..2164 1..2162 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:12 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25882576..25882622 1..47 100 -> Plus
3R 25885382..25885829 48..495 100 -> Plus
3R 25885895..25886020 496..621 100 -> Plus
3R 25886307..25886498 622..813 100 -> Plus
3R 25886566..25887019 814..1267 100 -> Plus
3R 25887111..25887231 1268..1388 100 -> Plus
3R 25887298..25888071 1389..2162 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:12 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25882576..25882622 1..47 100 -> Plus
3R 25885382..25885829 48..495 100 -> Plus
3R 25885895..25886020 496..621 100 -> Plus
3R 25886307..25886498 622..813 100 -> Plus
3R 25886566..25887019 814..1267 100 -> Plus
3R 25887111..25887231 1268..1388 100 -> Plus
3R 25887298..25888071 1389..2162 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:12 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25882576..25882622 1..47 100 -> Plus
3R 25885382..25885829 48..495 100 -> Plus
3R 25885895..25886020 496..621 100 -> Plus
3R 25886307..25886498 622..813 100 -> Plus
3R 25886566..25887019 814..1267 100 -> Plus
3R 25887111..25887231 1268..1388 100 -> Plus
3R 25887298..25888071 1389..2162 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:52:13 Download gff for FI17310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21711617..21711742 496..621 100 -> Plus
arm_3R 21712029..21712220 622..813 100 -> Plus
arm_3R 21708298..21708344 1..47 100 -> Plus
arm_3R 21711104..21711551 48..495 100 -> Plus
arm_3R 21712288..21712741 814..1267 100 -> Plus
arm_3R 21712833..21712953 1268..1388 100 -> Plus
arm_3R 21713020..21713793 1389..2162 100   Plus

FI17310.pep Sequence

Translation from 203 to 1456

> FI17310.pep
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPTDK
FATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVALAFLL
LPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVLTGHWL
LMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSYIFSTN
VMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLHNTGHF
SMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSRLTYFH
CSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLKGDLRR
MWSEPFIAQQPSKQLEV*

FI17310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16778-PA 435 GF16778-PA 1..435 1..417 2098 93.3 Plus
Dana\GF24718-PA 389 GF24718-PA 46..354 49..403 329 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11430-PA 417 GG11430-PA 1..417 1..417 2189 100 Plus
Dere\GG24644-PA 389 GG24644-PA 40..354 43..403 329 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22306-PA 424 GH22306-PA 36..424 29..417 1966 96.9 Plus
Dgri\GH10510-PA 390 GH10510-PA 47..355 49..403 335 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
SppL-PF 417 CG17370-PF 1..417 1..417 2148 100 Plus
SppL-PC 417 CG17370-PC 1..417 1..417 2148 100 Plus
SppL-PB 417 CG17370-PB 1..417 1..417 2148 100 Plus
SppL-PA 417 CG17370-PA 1..417 1..417 2148 100 Plus
SppL-PE 422 CG17370-PE 1..422 1..417 2127 98.6 Plus
SppL-PD 422 CG17370-PD 1..422 1..417 2127 98.6 Plus
Spp-PA 389 CG11840-PA 46..366 49..414 335 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22975-PA 422 GI22975-PA 35..422 30..417 1953 96.6 Plus
Dmoj\GI18028-PA 391 GI18028-PA 47..355 49..403 330 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21795-PA 434 GL21795-PA 46..434 29..417 1943 96.1 Plus
Dper\GL19257-PA 391 GL19257-PA 48..356 49..403 325 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14486-PA 432 GA14486-PA 44..432 29..417 1943 96.1 Plus
Dpse\GA11227-PA 391 GA11227-PA 48..356 49..403 325 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10271-PA 417 GM10271-PA 1..417 1..417 2189 100 Plus
Dsec\GM16661-PA 376 GM16661-PA 40..341 43..403 318 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21240-PA 417 GD21240-PA 1..417 1..417 2189 100 Plus
Dsim\GD22952-PA 374 GD22952-PA 46..339 49..403 326 28.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22735-PA 280 GJ22735-PA 41..280 31..270 1237 97.5 Plus
Dvir\GJ19708-PA 398 GJ19708-PA 51..359 49..403 329 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12863-PA 432 GK12863-PA 46..432 31..417 1946 96.9 Plus
Dwil\GK14664-PA 406 GK14664-PA 51..362 49..403 313 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23625-PA 417 GE23625-PA 1..417 1..417 2189 100 Plus
Dyak\GE16062-PA 389 GE16062-PA 40..354 43..403 328 28.5 Plus

FI17310.hyp Sequence

Translation from 203 to 1456

> FI17310.hyp
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPTDK
FATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVALAFLL
LPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVLTGHWL
LMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSYIFSTN
VMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLHNTGHF
SMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSRLTYFH
CSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLKGDLRR
MWSEPFIAQQPSKQLEV*

FI17310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
SppL-PF 417 CG17370-PF 1..417 1..417 2148 100 Plus
SppL-PC 417 CG17370-PC 1..417 1..417 2148 100 Plus
SppL-PB 417 CG17370-PB 1..417 1..417 2148 100 Plus
SppL-PA 417 CG17370-PA 1..417 1..417 2148 100 Plus
SppL-PE 422 CG17370-PE 1..422 1..417 2127 98.6 Plus