Clone FI17318 Report

Search the DGRC for FI17318

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:173
Well:18
Vector:pFlc-1
Associated Gene/Transcriptpdm2-RA
Protein status:FI17318.pep: gold
Sequenced Size:2184

Clone Sequence Records

FI17318.complete Sequence

2184 bp assembled on 2011-12-14

GenBank Submission: BT132934.1

> FI17318.complete
AGTTTCTAAGTTGCATTCGACCGAAGAAGTTGAAGCTAGACGGTCCGGTT
TCCTTGCTCGTGACAATTATTGAAATCGAACAGAACAGATCGGGAAAATA
GGAAACCGTAGACTCTCTTCGTCGTGAATGTTTAAGTGACCAACTGAATA
TTTAAATTTGAAAAACATTATTTAAATATAAAACTGCTAAAATGATGGTG
CTACAGCAACAACAACAACAGCGTCTCTGGGATGCAACAACAACGAGCAA
CACAAATACACAAACACAGCAATCGGCGAATGTGGAAAGCACGCCAACAA
AAGTTTGCCATCAGGAAAATGCAGCGACACACACATTTATGCGGCACATG
TCGAACTCACCAACACCGCCCTCGCCACTGCGTTCGCTATCAGACTGCGG
AAAGAGCTTCGAGGAGGAGGAACTGGAGCTGGGCGAGAACTGCGAGATGC
CACAGAATCTGAGCAGCAAGCGCCAGGCCAGGGAACTAGACTCTGAGCTG
GAAAACGAGGTCCTGGATCTGGCACCGCCACCGAAGAGATTGGCCGAGGA
GCAAGAGGAGGAAAAGGTGGCCAGTGTCAATCCACCACAGCCCGTGGCAT
TTGCACCGGAGGAAATGCATCAGGCTCTGCAACTGCAGTTGCACAGCTAC
ATCGAAATGGTTCGCCAATTGGCGCCGGAGGCGTTTCCCAATCCCAACCT
GGCCACGCAGTTCCTGCTGCAGAACTCACTGCAAGCCTTAGCGCAGTTTC
AGGCCCTGCAACAGATGAAGCAGCAGCAAAGGGAGGATCCTCTGCCCAGT
TACTCCACCCCCTTGGCCAAATCACCACTGAGAAGTCCATCCCTGAGTCC
GGTGCCCCGGCACAGCAAATCCCAGCAGCGAACTCCGCCAAACTCGATGA
CTGCCAATTCTCTGGGAATGAGTAGTGCCGTGATGACTCCAAATACGCCC
AGCATGCAGCAGCAGCCGCAACTGCAGCAGAGCACTCCCAAGCCCACGAG
TGGACTAACTGTGGCATCTGCCATGGCCAAGCTGGAACAATCGCCGGAAG
AGACCACCGATCTGGAGGAACTGGAACAGTTCGCCAAGACCTTCAAACAG
CGGCGAATCAAGCTGGGCTTCACCCAGGGCGATGTGGGTCTGGCCATGGG
CAAACTGTATGGCAATGACTTCTCGCAGACCACCATTTCCCGCTTCGAAG
CCCTCAATCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTGCTCCAG
AAATGGCTGGAGGATGCGGACAGCACGGTGGCCAAGTCGGGCGGTGGAGT
GTTCAACATCAACACGATGACCAGCACGCTGAGCAGCACACCGGAAAGCA
TCCTGGGACGCAGACGCAAGAAGCGCACCTCCATCGAGACCACGGTGCGC
ACCACGCTGGAGAAGGCCTTCCTGATGAACTGCAAGCCCACGTCGGAGGA
GATTAGCCAGCTGTCCGAGCGCTTGAACATGGACAAGGAGGTGATCCGGG
TGTGGTTCTGCAATCGCCGTCAGAAGGAGAAGCGCATCAATCCCTCGCTG
GATCTGGACAGTCCCACGGGCACTCCGCTGAGCAGTCATGCCTTTGGGTA
TCCACCGCAGGCTCTGAACATGTCCCACATGCAAATGGAGGGCGGTTCGG
GTTCCTTCTGCGGCAGTTCCATCAGTTCAGGGGAATAGGAGAAGCGGGTT
CAGCATGGAAATCCATCCATCCAATCTTGTACATAGTCAGCTTATGCTCC
AAATTCTTCCACAACATTCCACATGCCAGACTCTCCATATCAAATGCAAA
CAATGCCATGGATGTATTTAGTAAACTAGGTGATAGCCAGTCGTATCAGA
AAATCCATTACGAATTTATGAGTACATATAGCTCCAGTACACTATACTAC
CTATTCGTATCTGTATGCATATAGAGTTCCTAGTTCTAACTATTCCCCAA
ATGCCATACGTGTGTATCTGTTGTGCCCCATATCCCCCATATCCATTATG
CCACAAATCAGTCCTCTAGTTGTATTTACTGTACTGTGTATTGACCTAAA
TGTGTATGTATATGTATACCGATGTTGTTGTACGATGTCCAATTGTAAAT
TGATCTTGAACACACCTAGATCGTAACATCCAAAAATTTCAATAAAATTA
TTCCGATAAAATAATTTATAAAAAAAAAAAAAAA

FI17318.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12683227..12685005 391..2169 8880 99.9 Plus
chr2L 23010047 chr2L 12677287..12677622 1..336 1680 100 Plus
chr2L 23010047 chr2L 12625229..12625450 1040..1261 900 93.7 Plus
chr3L 24539361 chr3L 6783840..6784019 1092..1271 540 86.7 Plus
chr2L 23010047 chr2L 12625545..12625732 1365..1552 445 82.4 Plus
chr2L 23010047 chr2L 12679458..12679514 337..393 285 100 Plus
chr3L 24539361 chr3L 6784189..6784246 1480..1537 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12684528..12686313 391..2176 8915 99.9 Plus
2L 23513712 2L 12678606..12678941 1..336 1680 100 Plus
2L 23513712 2L 12626533..12626754 1040..1261 900 93.7 Plus
3L 28110227 3L 6791504..6791683 1092..1271 510 85.6 Plus
2L 23513712 2L 12626849..12627036 1365..1552 445 82.4 Plus
2L 23513712 2L 12680777..12680833 337..393 285 100 Plus
3L 28110227 3L 6791853..6791910 1480..1537 200 89.7 Plus
Blast to na_te.dros performed 2019-03-15 12:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 4623..4691 215..150 121 68.1 Minus

FI17318.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:02:18 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12679458..12679514 337..393 100 -> Plus
chr2L 12683230..12684990 394..2154 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-14 10:09:13 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 1..1497 192..1688 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:52:22 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 1..1497 192..1688 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:49:14 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 1..1497 192..1688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:09:13 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 1..2169 1..2169 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:52:22 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 3..2171 1..2169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:14 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 3..2171 1..2169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:18 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12678606..12678941 1..336 100 -> Plus
2L 12680777..12680833 337..393 100 -> Plus
2L 12684531..12686306 394..2169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:18 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12678606..12678941 1..336 100 -> Plus
2L 12680777..12680833 337..393 100 -> Plus
2L 12684531..12686306 394..2169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:18 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12678606..12678941 1..336 100 -> Plus
2L 12680777..12680833 337..393 100 -> Plus
2L 12684531..12686306 394..2169 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:52:22 Download gff for FI17318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12678606..12678941 1..336 100 -> Plus
arm_2L 12680777..12680833 337..393 100 -> Plus
arm_2L 12684531..12686306 394..2169 99   Plus

FI17318.pep Sequence

Translation from 191 to 1687

> FI17318.pep
MMVLQQQQQQRLWDATTTSNTNTQTQQSANVESTPTKVCHQENAATHTFM
RHMSNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKRQARELD
SELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQL
HSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDP
LPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTP
NTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKT
FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP
LLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIET
TVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRIN
PSLDLDSPTGTPLSSHAFGYPPQALNMSHMQMEGGSGSFCGSSISSGE*

FI17318.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14202-PA 918 GF14202-PA 460..918 49..498 1976 88.7 Plus
Dana\GF14200-PA 622 GF14200-PA 270..611 150..460 755 56.9 Plus
Dana\GF21043-PA 330 GF21043-PA 75..330 190..470 386 36.7 Plus
Dana\GF20045-PA 156 GF20045-PA 1..119 345..473 299 48.5 Plus
Dana\GF12353-PA 1013 GF12353-PA 830..1002 287..447 269 33.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23792-PA 909 GG23792-PA 455..909 49..498 2292 96 Plus
Dere\GG23791-PA 604 GG23791-PA 258..593 145..460 774 57.6 Plus
Dere\GG14388-PA 690 GG14388-PA 212..389 286..473 548 57.1 Plus
Dere\GG19406-PA 396 GG19406-PA 210..396 272..470 388 44.6 Plus
Dere\GG23353-PA 1008 GG23353-PA 825..997 287..447 269 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10117-PA 540 GH10117-PA 1..540 1..498 1640 70.7 Plus
Dgri\GH10114-PA 620 GH10114-PA 254..609 132..460 787 56.9 Plus
Dgri\GH15364-PA 442 GH15364-PA 231..413 286..484 537 55 Plus
Dgri\GH17948-PA 320 GH17948-PA 134..320 272..470 386 44.6 Plus
Dgri\GH21088-PA 1117 GH21088-PA 934..1106 287..447 267 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
pdm2-PA 498 CG12287-PA 1..498 1..498 2556 100 Plus
pdm2-PD 893 CG12287-PD 445..893 50..498 2299 100 Plus
pdm2-PC 893 CG12287-PC 445..893 50..498 2299 100 Plus
pdm2-PB 893 CG12287-PB 445..893 50..498 2299 100 Plus
nub-PE 601 CG34395-PE 119..590 6..460 879 46.4 Plus
nub-PD 601 CG34395-PD 119..590 6..460 879 46.4 Plus
nub-PB 961 CG34395-PB 479..950 6..460 879 46.4 Plus
vvl-PD 427 CG10037-PD 212..415 286..481 503 50.2 Plus
vvl-PA 427 CG10037-PA 212..415 286..481 503 50.2 Plus
vvl-PC 713 CG10037-PC 212..415 286..481 503 50.2 Plus
vvl-PE 726 CG10037-PE 212..415 286..481 503 50.2 Plus
vvl-PF 742 CG10037-PF 212..415 286..481 503 50.2 Plus
acj6-PH 357 CG9151-PH 101..357 187..470 359 36.7 Plus
acj6-PJ 359 CG9151-PJ 101..359 187..470 359 37 Plus
acj6-PF 364 CG9151-PF 76..364 191..470 359 35.9 Plus
acj6-PI 366 CG9151-PI 76..366 191..470 359 36.3 Plus
acj6-PC 368 CG9151-PC 112..368 187..470 359 36.7 Plus
acj6-PK 370 CG9151-PK 112..370 187..470 359 37 Plus
acj6-PE 375 CG9151-PE 87..375 191..470 359 35.9 Plus
acj6-PL 376 CG9151-PL 120..376 187..470 359 36.7 Plus
acj6-PN 378 CG9151-PN 120..378 187..470 359 37 Plus
acj6-PM 383 CG9151-PM 95..383 191..470 359 35.9 Plus
acj6-PG 387 CG9151-PG 131..387 187..470 359 36.7 Plus
acj6-PD 394 CG9151-PD 106..394 191..470 359 35.9 Plus
acj6-PA 396 CG9151-PA 106..396 191..470 359 36.3 Plus
pdm3-PE 1273 CG42698-PE 1041..1262 203..447 288 32.3 Plus
pdm3-PA 994 CG11641-PA 744..983 203..447 255 29.8 Plus
pdm3-PC 1291 CG42698-PC 1041..1280 203..447 255 29.8 Plus
pdm3-PF 1292 CG42698-PF 1041..1281 203..447 254 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14490-PA 559 GI14490-PA 72..544 47..484 1553 75.2 Plus
Dmoj\GI14486-PA 589 GI14486-PA 260..578 151..460 787 61.1 Plus
Dmoj\GI12964-PA 716 GI12964-PA 229..411 286..484 545 55.4 Plus
Dmoj\GI18690-PA 1167 GI18690-PA 984..1156 287..447 266 33.5 Plus
Dmoj\GI15417-PA 180 GI15417-PA 68..158 272..361 233 55.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19359-PA 361 GL19359-PA 120..361 257..498 1121 90.1 Plus
Dper\GL19353-PA 619 GL19353-PA 363..607 209..460 765 69.3 Plus
Dper\GL13276-PA 681 GL13276-PA 283..425 326..484 377 50.6 Plus
Dper\GL19359-PA 361 GL19359-PA 1..138 1..138 362 63.4 Plus
Dper\GL14745-PA 168 GL14745-PA 5..146 211..361 237 40.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11534-PA 964 GA11534-PA 496..964 49..498 1852 84.6 Plus
Dpse\GA19468-PA 620 GA19468-PA 271..608 150..460 762 57.6 Plus
Dpse\GA10024-PA 729 GA10024-PA 226..408 286..484 552 55.9 Plus
Dpse\GA26624-PA 294 GA26624-PA 108..294 272..470 376 43.6 Plus
Dpse\GA24646-PA 1091 GA24646-PA 846..1080 197..447 272 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26881-PA 889 GM26881-PA 442..889 49..498 2325 98.2 Plus
Dsec\GM26870-PA 601 GM26870-PA 332..590 200..460 755 67.4 Plus
Dsec\GM14797-PA 617 GM14797-PA 212..389 286..473 549 57.1 Plus
Dsec\GM25017-PA 258 GM25017-PA 72..258 272..470 386 44.6 Plus
Dsec\GM21028-PA 1049 GM21028-PA 866..1038 287..447 268 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23847-PA 889 GD23847-PA 442..889 49..498 2335 98.7 Plus
Dsim\GD23844-PA 601 GD23844-PA 332..590 200..460 753 67.4 Plus
Dsim\GD13969-PA 759 GD13969-PA 286..468 286..484 545 55.4 Plus
Dsim\GD15807-PA 266 GD15807-PA 80..266 272..470 385 44.6 Plus
Dsim\GD10557-PA 1046 GD10557-PA 863..1035 287..447 267 33.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\pdm2-PA 707 GJ16274-PA 216..707 49..498 1585 72.8 Plus
Dvir\GJ16273-PA 597 GJ16273-PA 266..586 150..460 777 61.5 Plus
Dvir\GJ13109-PA 441 GJ13109-PA 230..412 286..484 540 55.4 Plus
Dvir\GJ16375-PA 385 GJ16375-PA 199..385 272..470 388 44.6 Plus
Dvir\GJ21706-PA 1080 GJ21706-PA 897..1069 287..447 268 33.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15507-PA 523 GK15507-PA 1..523 1..498 1664 72.3 Plus
Dwil\GK15505-PA 614 GK15505-PA 275..602 151..460 809 60 Plus
Dwil\GK12556-PA 729 GK12556-PA 233..398 286..462 543 59.2 Plus
Dwil\GK20016-PA 264 GK20016-PA 5..264 186..470 393 36.9 Plus
Dwil\GK15826-PA 1144 GK15826-PA 961..1133 287..447 267 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18596-PA 903 GE18596-PA 447..903 49..498 2308 96.7 Plus
Dyak\GE18594-PA 603 GE18594-PA 258..592 145..460 784 58.1 Plus
Dyak\GE21576-PA 690 GE21576-PA 212..389 286..473 548 57.1 Plus
Dyak\GE19193-PA 1002 GE19193-PA 819..991 287..447 269 33.5 Plus
Dyak\GE16054-PA 218 GE16054-PA 72..218 272..470 253 34.2 Plus

FI17318.hyp Sequence

Translation from 191 to 1687

> FI17318.hyp
MMVLQQQQQQRLWDATTTSNTNTQTQQSANVESTPTKVCHQENAATHTFM
RHMSNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKRQARELD
SELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQL
HSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDP
LPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTP
NTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKT
FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP
LLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIET
TVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRIN
PSLDLDSPTGTPLSSHAFGYPPQALNMSHMQMEGGSGSFCGSSISSGE*

FI17318.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
pdm2-PA 498 CG12287-PA 1..498 1..498 2556 100 Plus
pdm2-PD 893 CG12287-PD 445..893 50..498 2299 100 Plus
pdm2-PC 893 CG12287-PC 445..893 50..498 2299 100 Plus
pdm2-PB 893 CG12287-PB 445..893 50..498 2299 100 Plus
nub-PE 601 CG34395-PE 119..590 6..460 879 46.4 Plus