Clone FI17328 Report

Search the DGRC for FI17328

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:173
Well:28
Vector:pFlc-1
Associated Gene/Transcriptjdp-RB
Protein status:FI17328.pep: gold
Sequenced Size:1625

Clone Sequence Records

FI17328.complete Sequence

1625 bp assembled on 2011-12-20

GenBank Submission: BT132968.1

> FI17328.complete
AGTTCGACTTTCGACGCGCTGCCAGAAACATCGTGAGCGCCGCTTATCCC
AAAAAAAACATATATAAATTCCCGACCGATCCCAGGAATAACTGACGCAA
TGAGCGCCGTTGATGCTATAATCAATTACAAGCGCAGTCCCAACGAGGAC
TTCTACGGTCTGCTCCATTGCGATGAGAACTCATCGCCCGAGCAGATCCA
GGCCGAGTACAAAGTCCTGGCCCTTCAGTACCATCCCGACAAGAACTCCG
GCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGTTAAAGGAGGCCAAGGAA
ACCTTGTGCGATCCCGAAAAGAGGGCCATCTACGACAAGTGGCGCAACAG
CGGCATCTCGATGAGCTACAAACAGTGGCTGGGCATGAAGGAGCATGTCG
GTCAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATGCTGCCC
GAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGGATGCAG
CAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGCGGGCCT
CGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAGTGGGGC
GGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGATCTAAGA
GGGTCGTCGGCCACATATAGATGTTTCAATTTTAAAAATATTTCAAGTCA
AACCGATGAGCGAGCAGGAGGAGTTGGGTGTCTATCCCGAAAGTTATGCA
ATTATATCAAAATATTCTGAAAGGGAAACAAAGTTTATTATCGATGTGTA
ACTTAAGCGTTGCGAACCACAGAGCACAGATACTCTTATATAGATGTTTA
TAGGTGTACAAATAAAAAATATATAGAAAAATGGTAATTAACTAACGTAT
ATTTAAGTGAAAGAAACTGTAATTTCAATAAACTCCCCCGATGAAAAATC
CCAGGCGGAGCGGCAAGAATTTTAAGTTGAAGTAATTAGTCAAATTTTAT
CGCAGTCATGCATATATGAATATACACACCATATACTATATATATATTTA
TGTAATCAGTGTATTTGTATATCGATGTTTCAAGTACCATGAATGTACCA
AGACAATCCCTTGGCAGCAAACAAAACTAAACTAAAGCTAATGCTAAAGC
TGTAACTGAAACTAAACTATTACTTAACTGGTGACAGTCTAGCGATTCAC
CCACCACGAGCCAGAAAATGAGAACATATTGAAAGACATGGCAAAGCGAA
TTTAAACCTCTATACACACGACACATTTGCATAGTCAAAAAAAGTAAATC
TCACTCGGTGTCCTTTTTAAATGCAACATTGCGAAAAGCTCCACTGAACT
GTTTTCCCTACCTGAAAAATCATTTTCGCAGAAAATCAACAAAAAAAAAA
AAAAATGTGACAAAATATCAAAGAAAAATCAAACAAAAAAAAAGTGCAGA
GTTTATATAAATGTTTTGATGGATAGAGCGGTGAACTTTTCAACTTATAC
ATATAGCAGAGATTATTGTCATTATTATTGTACTATTATGCGCAGCGCAG
AGAAATAATTACTACATAAATGTTGTTGCTGGATTTAAATGCATTACTTA
TACAACTACAAAAAAAAAAAAAAAA

FI17328.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26339883..26341088 1609..404 6015 99.9 Minus
chr3R 27901430 chr3R 26348762..26348894 186..54 665 100 Minus
chr3R 27901430 chr3R 26342160..26342278 405..287 595 100 Minus
chr3R 27901430 chr3R 26345745..26345848 289..186 520 100 Minus
chr3R 27901430 chr3R 26349500..26349552 53..1 235 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30517369..30518575 1610..404 6035 100 Minus
3R 32079331 3R 30526243..30526375 186..54 665 100 Minus
3R 32079331 3R 30519647..30519765 405..287 595 100 Minus
3R 32079331 3R 30523227..30523330 289..186 520 100 Minus
3R 32079331 3R 30526984..30527036 53..1 265 100 Minus
Blast to na_te.dros performed 2019-03-15 12:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3798..3957 750..905 123 58.3 Plus

FI17328.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:14:48 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26339883..26341086 406..1609 99 <- Minus
chr3R 26342160..26342276 289..405 100 <- Minus
chr3R 26345746..26345847 187..288 100 <- Minus
chr3R 26348762..26348894 54..186 100 <- Minus
chr3R 26349500..26349552 1..53 96   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-20 17:09:09 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 1..549 100..648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:31 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 1..549 100..648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:55:34 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 1..549 100..648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-20 17:09:08 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 4..1612 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:31 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 2..1610 1..1609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:34 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 2..1610 1..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:48 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517370..30518573 406..1609 100 <- Minus
3R 30519647..30519763 289..405 100 <- Minus
3R 30523228..30523329 187..288 100 <- Minus
3R 30526243..30526375 54..186 100 <- Minus
3R 30526984..30527036 1..53 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:48 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517370..30518573 406..1609 100 <- Minus
3R 30519647..30519763 289..405 100 <- Minus
3R 30523228..30523329 187..288 100 <- Minus
3R 30526243..30526375 54..186 100 <- Minus
3R 30526984..30527036 1..53 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:48 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517370..30518573 406..1609 100 <- Minus
3R 30519647..30519763 289..405 100 <- Minus
3R 30523228..30523329 187..288 100 <- Minus
3R 30526243..30526375 54..186 100 <- Minus
3R 30526984..30527036 1..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:31 Download gff for FI17328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26343092..26344295 406..1609 100 <- Minus
arm_3R 26345369..26345485 289..405 100 <- Minus
arm_3R 26348950..26349051 187..288 100 <- Minus
arm_3R 26351965..26352097 54..186 100 <- Minus
arm_3R 26352706..26352758 1..53 100   Minus

FI17328.pep Sequence

Translation from 99 to 647

> FI17328.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQSMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGGLTAASPNPAHRRA
SEGGAALYYGSRKGEWGGENTDVANKFRNYEI*

FI17328.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23324-PA 195 GF23324-PA 1..195 1..182 834 88.7 Plus
Dana\GF10450-PA 354 GF10450-PA 3..72 16..86 160 43.7 Plus
Dana\GF15175-PA 346 GF15175-PA 3..72 16..86 147 42.3 Plus
Dana\GF19555-PA 334 GF19555-PA 3..72 16..86 144 39.4 Plus
Dana\GF23490-PA 130 GF23490-PA 3..72 16..86 138 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11926-PA 184 GG11926-PA 1..184 1..182 903 97.8 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 3..72 16..86 156 42.3 Plus
Dere\GG13187-PA 127 GG13187-PA 4..72 17..86 143 41.4 Plus
Dere\GG24779-PA 350 GG24779-PA 3..72 16..86 143 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17424-PA 191 GH17424-PA 1..191 1..182 779 83.6 Plus
Dgri\GH15011-PA 353 GH15011-PA 3..72 16..86 154 40.8 Plus
Dgri\GH11404-PA 346 GH11404-PA 3..72 16..86 143 39.4 Plus
Dgri\GH11226-PA 355 GH11226-PA 25..88 17..80 142 43.8 Plus
Dgri\GH16902-PA 127 GH16902-PA 3..72 16..86 137 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PB 182 CG2239-PB 1..182 1..182 983 100 Plus
jdp-PA 195 CG2239-PA 1..195 1..182 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus
CG5001-PC 346 CG5001-PC 3..72 16..86 151 40.8 Plus
CG5001-PD 350 CG5001-PD 3..72 16..86 151 40.8 Plus
CG5001-PA 350 CG5001-PA 3..72 16..86 151 40.8 Plus
CG5001-PB 350 CG5001-PB 3..72 16..86 151 40.8 Plus
shv-PA 354 CG4164-PA 25..104 17..101 150 36.5 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22753-PA 192 GI22753-PA 1..192 1..182 843 84.1 Plus
Dmoj\GI13174-PA 352 GI13174-PA 3..72 16..86 156 42.3 Plus
Dmoj\GI21690-PA 355 GI21690-PA 25..88 17..80 153 45.3 Plus
Dmoj\GI15199-PA 325 GI15199-PA 3..72 16..86 152 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14039-PA 177 GL14039-PA 6..177 28..182 652 81.4 Plus
Dper\GL20776-PA 230 GL20776-PA 3..72 16..86 155 40.8 Plus
Dper\GL15626-PA 318 GL15626-PA 3..72 16..86 147 42.3 Plus
Dper\GL25452-PA 129 GL25452-PA 3..72 16..86 137 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15317-PB 186 GA15317-PB 1..186 1..182 829 90.3 Plus
Dpse\GA15317-PA 199 GA15317-PA 1..199 1..182 808 84.4 Plus
Dpse\GA15317-PC 182 GA15317-PC 1..114 1..114 541 86.8 Plus
Dpse\GA10408-PA 353 GA10408-PA 3..72 16..86 153 40.8 Plus
Dpse\GA18584-PA 346 GA18584-PA 3..72 16..86 147 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12145-PA 182 GM12145-PA 1..182 1..182 974 98.9 Plus
Dsec\GM16265-PA 72 GM16265-PA 1..72 111..182 360 97.2 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 3..72 16..86 156 43.7 Plus
Dsec\GM16806-PA 350 GM16806-PA 3..72 16..86 147 40.8 Plus
Dsec\GM22099-PA 128 GM22099-PA 3..72 16..86 140 40.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16969-PA 182 GD16969-PA 1..182 1..182 978 99.5 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 3..72 16..86 160 43.7 Plus
Dsim\GD23083-PA 346 GD23083-PA 3..72 16..86 147 40.8 Plus
Dsim\GD12075-PA 128 GD12075-PA 3..72 16..86 140 40.8 Plus
Dsim\GD17107-PA 143 GD17107-PA 3..65 16..79 135 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22754-PA 192 GJ22754-PA 1..192 1..182 857 84.1 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 3..72 16..86 150 43.7 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 3..66 16..80 149 44.6 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 3..72 16..86 145 42.3 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 3..72 16..86 134 38 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13121-PA 193 GK13121-PA 1..193 1..182 819 82.7 Plus
Dwil\GK19161-PA 125 GK19161-PA 4..79 17..93 154 39 Plus
Dwil\GK16875-PA 356 GK16875-PA 3..73 16..87 153 40.3 Plus
Dwil\GK15183-PA 346 GK15183-PA 3..72 16..86 146 42.3 Plus
Dwil\GK19767-PA 330 GK19767-PA 3..72 16..86 145 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23376-PA 182 GE23376-PA 1..182 1..182 970 98.4 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 3..72 16..86 156 42.3 Plus
Dyak\GE22992-PA 127 GE22992-PA 3..72 16..86 145 40.8 Plus
Dyak\GE19512-PA 127 GE19512-PA 3..72 16..86 145 40.8 Plus
Dyak\GE17451-PA 350 GE17451-PA 3..72 16..86 143 40.8 Plus

FI17328.hyp Sequence

Translation from 99 to 647

> FI17328.hyp
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQSMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGGLTAASPNPAHRRA
SEGGAALYYGSRKGEWGGENTDVANKFRNYEI*

FI17328.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PB 182 CG2239-PB 1..182 1..182 983 100 Plus
jdp-PA 195 CG2239-PA 1..195 1..182 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus