Clone FI17343 Report

Search the DGRC for FI17343

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:173
Well:43
Vector:pFlc-1
Associated Gene/TranscriptCG1969-RB
Protein status:FI17343.pep: gold
Sequenced Size:1357

Clone Sequence Records

FI17343.complete Sequence

1357 bp assembled on 2011-12-02

GenBank Submission: BT132889.1

> FI17343.complete
GAGTCTGCTCCGCAACTTCGACCGATAAAAGCGGCCGGAAAAACTTCCGC
TTCATTTTGTTAGTTTCGTTGCGGGAGATTGGGAAAAGTGCTAACGGGTG
CTTCACTATCATTATCAGACATTAGATAAAATCATGGAGGAGACATATCT
GTACGATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCA
ACTTTAAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAA
GTGCGTCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCT
CTCGCAACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCC
GCTTTTCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAG
GACACTCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCG
CAAGTTCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGG
TCAATGACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACC
GTATCGCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTG
CAAGGACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTC
CCGGAAACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTC
AAGCGGAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTG
CCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTG
CTCCAGGGTCCAAGCTTTGAGTGGGAGCACCCCATCTCAAAGTTACAAAT
GCGCGAAGCGCAATGCAACAAAACTAAAATTGGATTCTAAGAAAACATTA
AATGCATATAGGCATTGCCAAAATTCCATTGCGCTGAGGGCATGATGGAT
TTTTGGACAGCGCTGGCTGGCGGTGGTGTCCTTGTGGACGGACGTGCTTG
TCCACCCACCCGCGAGGACATACAATTAGATATTTAGTTAAAGACAACCG
CAACATATGTTGCTCTCTGTTTTTAATCCCTACAGAACTCTCAATTTTAT
AATTTTTTCTCCCCTTTCTGCTACTGAATGTGCGGCTCGACCTCTCAACT
CCAAGGTGGTTGTAATATTACCTTTTAAGAGCACCTTCATCAAGTAGCCC
TAAGATTGAAACACTCGCATAACTGTTAAACTGTTATTAACACTAATCAA
CAATAGCGATTAAAACCCAATACGAATCTTTCAAAAACCTTTAATGATTG
AAGAAATTCAATAAAGTGGACACTTTTTTCAAAAGCCCAGAAAAAAAAAA
AAAAAAA

FI17343.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25563752..25564554 538..1340 3820 98.4 Plus
chr3R 27901430 chr3R 25563169..25563380 136..347 1030 99.1 Plus
chr3R 27901430 chr3R 25562447..25562582 2..137 665 99.3 Plus
chr3R 27901430 chr3R 25563442..25563569 348..475 580 96.9 Plus
chr3R 27901430 chr3R 25563630..25563693 475..538 305 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741954 538..1342 3995 99.8 Plus
3R 32079331 3R 29740567..29740778 136..347 1060 100 Plus
3R 32079331 3R 29739845..29739980 2..137 680 100 Plus
3R 32079331 3R 29740840..29740967 348..475 640 100 Plus
3R 32079331 3R 29741028..29741091 475..538 320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29481981..29482785 538..1342 3995 99.7 Plus
3R 31820162 3R 29481398..29481609 136..347 1060 100 Plus
3R 31820162 3R 29480676..29480811 2..137 680 100 Plus
3R 31820162 3R 29481671..29481798 348..475 640 100 Plus
3R 31820162 3R 29481859..29481922 475..538 320 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:54:45 has no hits.

FI17343.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:30 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25563631..25563692 476..537 98 -> Plus
chr3R 25562446..25562581 1..136 98 -> Plus
chr3R 25563170..25563380 137..347 99 -> Plus
chr3R 25563442..25563569 348..475 96 -> Plus
chr3R 25563752..25564554 538..1340 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-02 15:41:08 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RB 1..648 134..781 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:50:20 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RF 1..687 134..820 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:45:42 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RF 1..687 134..820 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 15:41:08 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RB 1..1339 2..1340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:50:20 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RB 2..1341 1..1340 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:42 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RB 2..1341 1..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:30 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29739844..29739979 1..136 99 -> Plus
3R 29740568..29740778 137..347 100 -> Plus
3R 29740840..29740967 348..475 100 -> Plus
3R 29741029..29741090 476..537 100 -> Plus
3R 29741150..29741952 538..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:30 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29739844..29739979 1..136 99 -> Plus
3R 29740568..29740778 137..347 100 -> Plus
3R 29740840..29740967 348..475 100 -> Plus
3R 29741029..29741090 476..537 100 -> Plus
3R 29741150..29741952 538..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:30 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29739844..29739979 1..136 99 -> Plus
3R 29740568..29740778 137..347 100 -> Plus
3R 29740840..29740967 348..475 100 -> Plus
3R 29741029..29741090 476..537 100 -> Plus
3R 29741150..29741952 538..1340 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:50:20 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 137..347 100 -> Plus
arm_3R 25566562..25566689 348..475 100 -> Plus
arm_3R 25566751..25566812 476..537 100 -> Plus
arm_3R 25565566..25565701 1..136 99 -> Plus
arm_3R 25566872..25567674 538..1340 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:45:50 Download gff for FI17343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29481981..29482783 538..1340 99   Plus
3R 29480675..29480810 1..136 99 -> Plus
3R 29481399..29481609 137..347 100 -> Plus
3R 29481671..29481798 348..475 100 -> Plus
3R 29481860..29481921 476..537 100 -> Plus

FI17343.hyp Sequence

Translation from 133 to 780

> FI17343.hyp
MEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDTDYDR
GFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEIIGAA
SLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEELGCY
KMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSAGSSG
TVGDSCQTVSLDFAS*

FI17343.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PH 215 CG1969-PH 1..215 1..215 1112 100 Plus
CG1969-PG 215 CG1969-PG 1..215 1..215 1112 100 Plus
CG1969-PB 215 CG1969-PB 1..215 1..215 1112 100 Plus
CG1969-PF 228 CG1969-PF 1..215 1..215 1112 100 Plus
CG1969-PA 219 CG1969-PA 6..219 2..215 1107 100 Plus

FI17343.pep Sequence

Translation from 133 to 780

> FI17343.pep
MEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDTDYDR
GFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEIIGAA
SLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEELGCY
KMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSAGSSG
TVGDSCQTVSLDFAS*

FI17343.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23369-PA 219 GF23369-PA 6..219 2..215 1121 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11689-PA 219 GG11689-PA 6..219 2..215 1144 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14324-PA 219 GH14324-PA 5..219 1..215 1010 87.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gnpnat-PH 215 CG1969-PH 1..215 1..215 1112 100 Plus
Gnpnat-PG 215 CG1969-PG 1..215 1..215 1112 100 Plus
Gnpnat-PB 215 CG1969-PB 1..215 1..215 1112 100 Plus
Gnpnat-PF 228 CG1969-PF 1..215 1..215 1112 100 Plus
Gnpnat-PA 219 CG1969-PA 6..219 2..215 1107 100 Plus
Gnpnat-PE 221 CG1969-PE 1..209 1..209 1084 100 Plus
Gnpnat-PD 225 CG1969-PD 6..214 2..210 1076 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10420-PA 219 GI10420-PA 6..219 2..215 1012 88.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13913-PA 222 GL13913-PA 6..222 2..215 1028 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15162-PB 218 GA15162-PB 1..218 1..215 1034 92.2 Plus
Dpse\GA15162-PA 222 GA15162-PA 6..222 2..215 1028 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12815-PA 219 GM12815-PA 6..219 2..215 1140 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21459-PA 219 GD21459-PA 6..219 2..215 1140 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10636-PA 217 GJ10636-PA 6..217 2..215 1000 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11919-PA 219 GK11919-PA 6..219 2..215 1025 90.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23878-PA 219 GE23878-PA 6..219 2..215 1148 100 Plus