Clone FI17828 Report

Search the DGRC for FI17828

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:28
Vector:pOT2
Associated Gene/TranscriptFas3-RD
Protein status:FI17828.pep: gold
Sequenced Size:2566

Clone Sequence Records

FI17828.complete Sequence

2566 bp assembled on 2012-01-17

GenBank Submission: BT133041.1

> FI17828.complete
TTGCTCCTATCAGTCGTTCTCTGTCGCTCTTGGATTGCGTGGGCACATCG
GTCGTTCGGCATTTTGGGTTCGGCATTTCGGGATTTGATATCGTTATTCG
TGTCGGAATCGTATAAACCTGCGTCCGTGTGCGTTAGCCGGCCATTGAGC
ACTATCGCTGCCACTGGCATTTGGCCCACCGTGTGTGTTTACAAGTGTGG
CATAATCTTCGATTAGCGCAAACCAACCGATCGGATATACCCCTTGAAAA
TAACAAATAATAGCGAGGAGTTAAAAAAGCATCCAAACACACACTGCACA
CCCCAAAACACACACACACACCCACACGTCACATAAAAAATATAAACCAG
AGCCTCAGCGGCCGTAAAGTGCCACCAAAACGTACTTGGCCGTATATTTT
ATGCATGAAAAGCTAAAGCAAGTGCAACCAAACGCCTGAGTGACACCAAG
AAAAAAAATTCATACACACATATAAGGAAACCCAAAAAAACAAAACCGGG
ATTACTTATACGCTCACGCTCAGTAGAAAAAATACGCGAAGCCAAAGGAA
GTCAGCAGCAAAATCATGTCACGGATCGTTTTTATATGTCTCGCAGCCAT
CTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACAG
CGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGA
TCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAA
CCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCGG
GTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAGC
AACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGTC
GGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATCG
AGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAA
TTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTC
GTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGG
TCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGAA
ATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCCG
CTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCCT
ACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGTG
TATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCGC
CAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGGC
AGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGGC
AACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAGA
TACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACGG
ACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCTC
GATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCCT
GGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTTG
GCGGCAAATCAATCAAGACGCCCACAAACGAAACTCAAATCGACAAGCAA
CTGGAGTTGGGAGCCCAGCAGAATCACGGTCAAAACGTAGCACTCTTGGA
AACACCCAATGGCATAACCTTGTTGGGCGCCAGTAAGCTGAGAGAGGTTA
ATGGAAACGGAAACGGAAATGGCCAGCAGGATCGGTTGTCGGTTGAAAGA
CGCCATCACGATGAAGATGACAGCTTTGAATACGGAACGGATCGGGAGAG
CAGTGTATATAACCCCACCACGCGACCTCTGAAGAGCATCCTGATGAGCC
AGGCGGCAGGACGAAACTCCCGGAGCTCTGCCAGCGATAAGGATGAAGGC
AACGAGAACGCCGATCTCCTGCAGAAGGGCAATCAACTGGGGATTCCTGA
ATCGCGCTTCTCACGCTGGCTGCCCAAGGATCAACGTGAGCTGATCGAAA
AGCAGGCGATGTTGCTTTCGGGAAGGGGCAAGTCGACGGCGCCAGCCACT
CCACCCAAGCCCCAAAGACCCCCGATGGGAACGACTACCACTGCCACAAC
GACGACGACACCGACGACGCCAAAGTTGCCACAGGAAACGGAAATCTGAG
CGTGTGCACGAAACGCCCAGCAGGATTAAGAATGGAGTAGTCTTGTGACC
ATCGGGAACTTTTCGGGGGACAGCCATAAGTGTCAAGACTTAAAGCTGAT
GTGTCAGATCCAACTGAACCGATATAAATTAAGTTTAGCACGCATATGCC
TGGTATTTATCAAATGAGACCACCATGATGTTAAAAAGAATTCTACTTTT
CACAACCGGAATATGAAAACCATATAATATATATTTTTATAATTATAAAA
AAAAAAAAAAAAAAAA

FI17828.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18318793..18319400 1..608 3025 99.8 Plus
chr2L 23010047 chr2L 18387056..18387631 1735..2310 2880 100 Plus
chr2L 23010047 chr2L 18383133..18383568 1269..1704 2180 100 Plus
chr2L 23010047 chr2L 18382513..18382854 927..1268 1710 100 Plus
chr2L 23010047 chr2L 18382073..18382393 606..926 1605 100 Plus
chr2L 23010047 chr2L 18387686..18387922 2310..2546 1170 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18320123..18320730 1..608 3040 100 Plus
2L 23513712 2L 18388382..18388957 1735..2310 2880 100 Plus
2L 23513712 2L 18384459..18384894 1269..1704 2180 100 Plus
2L 23513712 2L 18383839..18384180 927..1268 1710 100 Plus
2L 23513712 2L 18383399..18383719 606..926 1605 100 Plus
2L 23513712 2L 18389012..18389249 2310..2547 1175 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 12:31:57 has no hits.

FI17828.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:32:57 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18385961..18385991 1704..1734 100 -> Plus
chr2L 18318793..18319400 1..608 99 -> Plus
chr2L 18382076..18382393 609..926 100 -> Plus
chr2L 18382513..18382854 927..1268 100 -> Plus
chr2L 18383133..18383567 1269..1703 100 -> Plus
chr2L 18387056..18387630 1735..2309 100 -> Plus
chr2L 18387686..18387897 2310..2521 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-17 10:16:17 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 1..1734 566..2299 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:59:53 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RD 1..1734 566..2299 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:02:21 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RD 1..1734 566..2299 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 10:16:17 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 23..2568 1..2546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:59:53 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 22..2567 1..2546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:02:21 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 22..2567 1..2546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:32:57 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18320123..18320730 1..608 100 -> Plus
2L 18383402..18383719 609..926 100 -> Plus
2L 18383839..18384180 927..1268 100 -> Plus
2L 18384459..18384893 1269..1703 100 -> Plus
2L 18387287..18387317 1704..1734 100 -> Plus
2L 18388382..18388956 1735..2309 100 -> Plus
2L 18389012..18389248 2310..2546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:32:57 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18320123..18320730 1..608 100 -> Plus
2L 18383402..18383719 609..926 100 -> Plus
2L 18383839..18384180 927..1268 100 -> Plus
2L 18384459..18384893 1269..1703 100 -> Plus
2L 18387287..18387317 1704..1734 100 -> Plus
2L 18388382..18388956 1735..2309 100 -> Plus
2L 18389012..18389248 2310..2546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:32:57 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18320123..18320730 1..608 100 -> Plus
2L 18383402..18383719 609..926 100 -> Plus
2L 18383839..18384180 927..1268 100 -> Plus
2L 18384459..18384893 1269..1703 100 -> Plus
2L 18387287..18387317 1704..1734 100 -> Plus
2L 18388382..18388956 1735..2309 100 -> Plus
2L 18389012..18389248 2310..2546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:59:53 Download gff for FI17828.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18320123..18320730 1..608 100 -> Plus
arm_2L 18383402..18383719 609..926 100 -> Plus
arm_2L 18383839..18384180 927..1268 100 -> Plus
arm_2L 18384459..18384893 1269..1703 100 -> Plus
arm_2L 18387287..18387317 1704..1734 100 -> Plus
arm_2L 18388382..18388956 1735..2309 100 -> Plus
arm_2L 18389012..18389248 2310..2546 99   Plus

FI17828.hyp Sequence

Translation from 565 to 2298

> FI17828.hyp
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETQIDKQLELGA
QQNHGQNVALLETPNGITLLGASKLREVNGNGNGNGQQDRLSVERRHHDE
DDSFEYGTDRESSVYNPTTRPLKSILMSQAAGRNSRSSASDKDEGNENAD
LLQKGNQLGIPESRFSRWLPKDQRELIEKQAMLLSGRGKSTAPATPPKPQ
RPPMGTTTTATTTTTPTTPKLPQETEI*

FI17828.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PE 577 CG5803-PE 1..577 1..577 2991 100 Plus
Fas3-PD 577 CG5803-PD 1..577 1..577 2991 100 Plus
Fas3-PG 557 CG5803-PG 1..530 1..566 2050 74.4 Plus
Fas3-PF 401 CG5803-PF 1..391 1..391 2024 99.7 Plus
Fas3-PB 401 CG5803-PB 1..391 1..391 2024 99.7 Plus

FI17828.pep Sequence

Translation from 565 to 2298

> FI17828.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETQIDKQLELGA
QQNHGQNVALLETPNGITLLGASKLREVNGNGNGNGQQDRLSVERRHHDE
DDSFEYGTDRESSVYNPTTRPLKSILMSQAAGRNSRSSASDKDEGNENAD
LLQKGNQLGIPESRFSRWLPKDQRELIEKQAMLLSGRGKSTAPATPPKPQ
RPPMGTTTTATTTTTPTTPKLPQETEI*

FI17828.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15054-PA 785 GF15054-PA 280..662 9..390 1696 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21115-PA 509 GG21115-PA 1..390 1..390 1916 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11209-PA 526 GH11209-PA 1..391 1..390 1718 88 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PE 577 CG5803-PE 1..577 1..577 2991 100 Plus
Fas3-PD 577 CG5803-PD 1..577 1..577 2991 100 Plus
Fas3-PG 557 CG5803-PG 1..530 1..566 2050 74.4 Plus
Fas3-PA 508 CG5803-PA 1..468 1..462 2032 85.8 Plus
Fas3-PF 401 CG5803-PF 1..391 1..391 2024 99.7 Plus
Fas3-PB 401 CG5803-PB 1..391 1..391 2024 99.7 Plus
Fas3-PC 475 CG5803-PC 1..415 1..408 1989 93.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18132-PA 526 GI18132-PA 1..391 1..390 1703 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18701-PA 521 GL18701-PA 1..391 1..390 1772 91.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19141-PA 518 GA19141-PA 1..391 1..390 1776 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17274-PA 401 GM17274-PA 1..393 1..393 2088 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24138-PA 508 GD24138-PA 1..390 1..390 1915 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17756-PA 362 GJ17756-PA 1..347 1..346 1584 87.3 Plus
Dvir\GJ17757-PA 211 GJ17757-PA 5..211 381..577 582 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15545-PA 512 GK15545-PA 4..394 1..390 1655 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13188-PA 508 GE13188-PA 1..390 1..390 1880 98.7 Plus